Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000283

Physical Location & Seq

Genomic Coordinates Reverse (-)

92531001 .. 92548264

Gene Structure 17264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00071560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGAAGAACCACCGCTGCTGTTCCGTGGAAGAACCAATTGCTGCATTTTCAATTCTTGTTCTTCGAGCAGCGAAGAGAAACGACTTCTTGGGCTATGGAGTCTTACGTTGAGGGATGATTCCGATTTGGTGGAAGAACAGCGGTGGATCCAAGCTGGCATGAATTGCGAACTGATAGTATATGATTATCAAGGCCCGTACACTTCCATTGGAGGTCTAAAGTCATGTACCCATAAAACAAAGAATACTAAAAATATAAAAGAGTGTCATTTGCTCTACTCAAATGATACAGTTAGGAAAGTGTATCCAAACTGGGTGGCCACTAGAGATTTTGCTAGTAGGGTTATGCTGTTGATGTTGCTTCCAGGTGTTCATGGTGACGTGGCAAGGTTTTGTGGTGGAGATGGAGAGAAAGAAGATGTAGTGGGTGGTATGGGTGGTGCCTCTCTTCCTTGTGAGAAGAGATGCTTAAATAGATGGAGAGAGAGGTGTGAAATGGTATTGAGAAGGAAAAGAGAGCAGCTCAAGCATTATGATTTGTACCGCAAAAATTGCCAGACAAAACATGGTTCATTTCCCAACTGTCACGAGTTTTTGAGATATCTCCATATTGGATTATTGTGTGTTCAAGAAGATGCATATGACAGGCCAACCATGTCTTCTGCCGTTTTAATGTTGAAAAGTGAAACTGTAAATCTCAGCCAACCTGGAAAACCTGCCTTCTCCATTGGAACATTCAGTCATGTCCACAATAAGGCTGGTGCTGTTAGCAGTTCTTATAATGGACTAACAATTTCCAACATAGCGCCACGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3403 Pkinase_Tyr Stress-antifung

Protein Analysis

271

Amino Acids

30.69

Weight (kDa)

8.75

Isoelectric Point (pI)

57.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45860 AT4G05200 AT4G05200 AT4G11521 AT4G11530 AT4G23130 AT4G23130 AT4G23130 AT4G23140 AT4G23140 AT4G23150 AT4G23160 AT4G23170 AT4G23180 AT4G23180 AT4G23180 AT4G23230 AT4G23270 AT4G23270 AT4G23270 AT4G23280 AT4G23280 AT4G23280 AT4G23310 AT4G23310
fragaria_vesca	FvH4_3g02772 FvH4_3g02772 FvH4_3g02773 FvH4_3g02773 FvH4_3g02774 FvH4_3g02800 FvH4_3g02820 FvH4_3g02820 FvH4_3g02830
malus_domestica	MD00G1101900.v1.1 MD00G1102100.v1.1 MD00G1102200.v1.1 MD01G1098200.v1.1 MD05G1340000.v1.1 MD05G1340300.v1.1 MD07G1014100.v1.1 MD07G1014300.v1.1 MD07G1014400.v1.1 MD07G1014700.v1.1 MD10G1312900.v1.1 MD11G1022600.v1.1 MD11G1291500.v1.1 MD14G1207100.v1.1 MD16G1096600.v1.1
prunus_persica	Prupe.4G027300_v2.0.a1 Prupe.4G027400_v2.0.a1 Prupe.4G027700_v2.0.a1 Prupe.4G027800_v2.0.a1
pyrus_communis	pycom05g30960 pycom10g00940 pycom10g00950 pycom10g26430 pycom10g26450 pycom10g26460 pycom10g26470 pycom10g26480 pycom10g26490 pycom10g26500 pycom10g26510 pycom10g26570 pycom11g01820 pycom11g04000 pycom14g17130 pycom14g17140 pycom15g28820
rosa_chinensis	RchiOBHm_Chr4g0408141 RchiOBHm_Chr5g0004211 RchiOBHm_Chr5g0004231 RchiOBHm_Chr5g0004241 RchiOBHm_Chr5g0004261
rosa_laevigata	RLG00000008668 RLG00000008672 RLG00000031212 RLG00000031217
rosa_multiflora	Rmu_co8162658.1_g000001 Rmu_co8336297.1_g000001 Rmu_sc0002073.1_g000001 Rmu_sc0004964.1_g000002 Rmu_sc0004964.1_g000003 Rmu_sc0004964.1_g000007 Rmu_sc0006006.1_g000007 Rmu_sc0007868.1_g000015 Rmu_sc0007868.1_g000016 Rmu_sc0007868.1_g000017 Rmu_sc0007868.1_g000021 Rmu_sc0007868.1_g000023 Rmu_sc0019654.1_g000002 Rmu_sc0038540.1_g000001
rosa_roxburghii	Rroxscaffold_1G00071450 Rroxscaffold_1G00071460 Rroxscaffold_1G00071470 Rroxscaffold_1G00071560 Rroxscaffold_1G00071720 Rroxscaffold_1G00071770 Rroxscaffold_5G00352640
rosa_rugosa	Rorug04G0083700 Rorug04G0410700 Rorug04G0410800 Rorug04G0410900
rosa_samantha	Rh4BG145400 Rh4CG154900 Rh4DG141900 Rh5BG037500 Rh5BG037600 Rh5BG037700 Rh5CG041000 Rh5CG041100 Rh5CG041200 Rh5CG041300 Rh5CG041400 Rh5DG037100
rosa_wichuraiana	Rw4G012130 Rw5G003450 Rw5G003460 Rw5G003470 Rw5G003480 Rw5G003640 Rw5G003660 Rw5G003670 Rw5G003680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	780
Acc36I	ACCTGC	1 cut(s)	724
AccB1I	GGYRCC	1 cut(s)	440
AciI	CCGC	3 cut(s)	14, 142, 544
AclWI	GGATC	2 cut(s)	142, 155
AcoI	YGGCCR	1 cut(s)	318
AfaI	GTAC	3 cut(s)	200, 229, 542
AfiI	CCNNNNNNNGG	1 cut(s)	754
AgsI	TTSAA	3 cut(s)	52, 629, 679
AjiI	CACGTC	1 cut(s)	382
AjnI	CCWGG	2 cut(s)	364, 706
AjuI	GAANNNNNNNTTGG	2 cut(s)	643, 675
AluBI	AGCT	2 cut(s)	155, 523
AluI	AGCT	2 cut(s)	155, 523
AlwI	GGATC	2 cut(s)	142, 155
AoxI	GGCC	3 cut(s)	193, 318, 647
ApeKI	GCWGC	4 cut(s)	16, 42, 69, 520
AspLEI	GCGC	1 cut(s)	808
AspS9I	GGNCC	1 cut(s)	194
AsuHPI	GGTGA	1 cut(s)	389
BalI	TGGCCA	1 cut(s)	320
BamHI	GGATCC	1 cut(s)	147
BanI	GGYRCC	1 cut(s)	440
BauI	CACGAG	1 cut(s)	587
BbsI	GAAGAC	1 cut(s)	651
BbvI	GCAGC	4 cut(s)	3, 29, 81, 532
BccI	CCATC	2 cut(s)	398, 471
BceAI	ACGGC	1 cut(s)	650
BciT130I	CCWGG	2 cut(s)	366, 708
BciVI	GTATCC	1 cut(s)	315
BfaI	CTAG	2 cut(s)	324, 336
BfoI	RGCGCY	1 cut(s)	809
BfuAI	ACCTGC	1 cut(s)	724
BfuI	GTATCC	1 cut(s)	315
BisI	GCNGC	4 cut(s)	17, 43, 70, 521
BlsI	GCNGC	4 cut(s)	18, 44, 71, 522
Bme1390I	CCNGG	2 cut(s)	366, 708
BmgBI	CACGTC	1 cut(s)	382
BmgT120I	GGNCC	1 cut(s)	194
BmiI	GGNNCC	2 cut(s)	149, 442
BmrFI	CCNGG	2 cut(s)	366, 708
BmrI	ACTGGG	1 cut(s)	322
BmsI	GCATC	2 cut(s)	455, 625
BmuI	ACTGGG	1 cut(s)	322
BpiI	GAAGAC	1 cut(s)	651
BplI	GAGNNNNNCTC	2 cut(s)	507, 539
BpuEI	CTTGAG	1 cut(s)	509
BsaJI	CCNNGG	2 cut(s)	25, 809
Bsc4I	CCNNNNNNNGG	1 cut(s)	754
Bse1I	ACTGG	1 cut(s)	317
BseBI	CCWGG	2 cut(s)	366, 708
BseDI	CCNNGG	2 cut(s)	25, 809
BseGI	GGATG	1 cut(s)	121
BseLI	CCNNNNNNNGG	1 cut(s)	754
BseMII	CTCAG	1 cut(s)	712
BseNI	ACTGG	1 cut(s)	317
BseXI	GCAGC	4 cut(s)	3, 29, 81, 532
BshFI	GGCC	3 cut(s)	195, 320, 649
BshNI	GGYRCC	1 cut(s)	440
BslI	CCNNNNNNNGG	1 cut(s)	754
BsnI	GGCC	3 cut(s)	195, 320, 649
Bsp143I	GATC	1 cut(s)	147
BspACI	CCGC	3 cut(s)	14, 142, 544
BspANI	GGCC	3 cut(s)	195, 320, 649
BspCNI	CTCAG	1 cut(s)	711
BspLI	GGNNCC	2 cut(s)	149, 442
BspMI	ACCTGC	1 cut(s)	724
BspPI	GGATC	2 cut(s)	142, 155
BspT107I	GGYRCC	1 cut(s)	440
BsrI	ACTGG	1 cut(s)	317
BssECI	CCNNGG	2 cut(s)	25, 809
BssMI	GATC	1 cut(s)	147
BssSI	CACGAG	1 cut(s)	587
Bst2BI	CACGAG	1 cut(s)	587
Bst2UI	CCWGG	2 cut(s)	366, 708
Bst4CI	ACNGT	4 cut(s)	292, 584, 691, 813
Bst6I	CTCTTC	3 cut(s)	69, 453, 455
BstAPI	GCANNNNNTGC	2 cut(s)	165, 552
BstC8I	GCNNGC	1 cut(s)	157
BstDEI	CTNAG	1 cut(s)	698
BstDSI	CCRYGG	2 cut(s)	25, 809
BstF5I	GGATG	1 cut(s)	121
BstH2I	RGCGCY	1 cut(s)	809
BstHHI	GCGC	1 cut(s)	808
BstKTI	GATC	1 cut(s)	150
BstMBI	GATC	1 cut(s)	147
BstMWI	GCNNNNNNNGC	3 cut(s)	165, 526, 552
BstNI	CCWGG	2 cut(s)	366, 708
BstSCI	CCNGG	2 cut(s)	364, 706
BstV1I	GCAGC	4 cut(s)	3, 29, 81, 532
BstV2I	GAAGAC	1 cut(s)	651
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
BsuI	GTATCC	1 cut(s)	315
BsuRI	GGCC	3 cut(s)	195, 320, 649
BtgI	CCRYGG	2 cut(s)	25, 809
BtrI	CACGTC	1 cut(s)	382
BtsCI	GGATG	1 cut(s)	121
BveI	ACCTGC	1 cut(s)	724
Cac8I	GCNNGC	1 cut(s)	157
CfoI	GCGC	1 cut(s)	808
Cfr13I	GGNCC	1 cut(s)	194
Csp6I	GTAC	3 cut(s)	199, 228, 541
CspCI	CAANNNNNGTGG	2 cut(s)	297, 332
CviAII	CATG	6 cut(s)	160, 225, 374, 566, 655, 743
CviJI	RGCY	8 cut(s)	94, 155, 195, 320, 523, 649, 702, 758
CviKI_1	RGCY	8 cut(s)	94, 155, 195, 320, 523, 649, 702, 758
CviQI	GTAC	3 cut(s)	199, 228, 541
DdeI	CTNAG	1 cut(s)	698
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
EaeI	YGGCCR	1 cut(s)	318
Eam1104I	CTCTTC	3 cut(s)	69, 453, 455
EarI	CTCTTC	3 cut(s)	69, 453, 455
Eco32I	GATATC	1 cut(s)	602
EcoRII	CCWGG	2 cut(s)	364, 706
EcoRV	GATATC	1 cut(s)	602
EcoT22I	ATGCAT	1 cut(s)	640
FaeI	CATG	6 cut(s)	163, 228, 377, 569, 658, 746
FalI	AAGNNNNNCTT	2 cut(s)	452, 484
FatI	CATG	6 cut(s)	159, 224, 373, 565, 654, 742
FauNDI	CATATG	1 cut(s)	640
Fnu4HI	GCNGC	4 cut(s)	17, 43, 70, 521
FokI	GGATG	1 cut(s)	128
Fsp4HI	GCNGC	4 cut(s)	17, 43, 70, 521
FspBI	CTAG	2 cut(s)	324, 336
GlaI	GCGC	1 cut(s)	807
GluI	GCNGC	4 cut(s)	17, 43, 70, 521
HaeII	RGCGCY	1 cut(s)	809
HaeIII	GGCC	3 cut(s)	195, 320, 649
HhaI	GCGC	1 cut(s)	808
Hin1II	CATG	6 cut(s)	163, 228, 377, 569, 658, 746
Hin6I	GCGC	1 cut(s)	806
HinP1I	GCGC	1 cut(s)	806
HinfI	GANTC	2 cut(s)	100, 119
HphI	GGTGA	1 cut(s)	389
Hpy166II	GTNNAC	2 cut(s)	201, 748
Hpy188I	TCNGA	1 cut(s)	124
Hpy188III	TCNNGA	2 cut(s)	587, 629
Hpy8I	GTNNAC	2 cut(s)	201, 748
HpyAV	CCTTC	2 cut(s)	501, 730
HpyCH4III	ACNGT	4 cut(s)	292, 584, 691, 813
HpyCH4IV	ACGT	2 cut(s)	107, 381
HpyCH4V	TGCA	2 cut(s)	45, 638
HpyF10VI	GCNNNNNNNGC	3 cut(s)	165, 526, 552
HpyF3I	CTNAG	1 cut(s)	698
HpySE526I	ACGT	2 cut(s)	107, 381
Hsp92II	CATG	6 cut(s)	163, 228, 377, 569, 658, 746
HspAI	GCGC	1 cut(s)	806
Kzo9I	GATC	1 cut(s)	147
Lsp1109I	GCAGC	4 cut(s)	3, 29, 81, 532
LweI	GCATC	2 cut(s)	455, 625
MaeI	CTAG	2 cut(s)	324, 336
MaeII	ACGT	2 cut(s)	107, 381
MaeIII	GTNAC	2 cut(s)	377, 584
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MfeI	CAATTG	1 cut(s)	37
MflI	RGATCY	1 cut(s)	147
MlsI	TGGCCA	1 cut(s)	320
MluCI	AATT	5 cut(s)	37, 52, 163, 550, 792
MluNI	TGGCCA	1 cut(s)	320
MlyI	GAGTC	1 cut(s)	109
MnlI	CCTC	4 cut(s)	105, 206, 454, 480
Mox20I	TGGCCA	1 cut(s)	320
Mph1103I	ATGCAT	1 cut(s)	640
MscI	TGGCCA	1 cut(s)	320
MseI	TTAA	2 cut(s)	470, 671
Msp20I	TGGCCA	1 cut(s)	320
MspA1I	CMGCKG	2 cut(s)	16, 142
MspR9I	CCNGG	2 cut(s)	366, 708
MunI	CAATTG	1 cut(s)	37
MvaI	CCWGG	2 cut(s)	366, 708
MwoI	GCNNNNNNNGC	3 cut(s)	165, 526, 552
NdeI	CATATG	1 cut(s)	640
NdeII	GATC	1 cut(s)	147
NlaIII	CATG	6 cut(s)	163, 228, 377, 569, 658, 746
NlaIV	GGNNCC	2 cut(s)	149, 442
NmuCI	GTSAC	2 cut(s)	377, 584
NsiI	ATGCAT	1 cut(s)	640
PfeI	GAWTC	1 cut(s)	119
PkrI	GCNGC	4 cut(s)	18, 44, 71, 522
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
PsiI	TTATAA	1 cut(s)	780
Psp6I	CCWGG	2 cut(s)	364, 706
PspGI	CCWGG	2 cut(s)	364, 706
PspN4I	GGNNCC	2 cut(s)	149, 442
PspPI	GGNCC	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	147
RsaI	GTAC	3 cut(s)	200, 229, 542
RsaNI	GTAC	3 cut(s)	199, 228, 541
SaqAI	TTAA	2 cut(s)	470, 671
SatI	GCNGC	4 cut(s)	17, 43, 70, 521
Sau3AI	GATC	1 cut(s)	147
Sau96I	GGNCC	1 cut(s)	194
SchI	GAGTC	1 cut(s)	109
ScrFI	CCNGG	2 cut(s)	366, 708
SfaNI	GCATC	2 cut(s)	455, 625
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
Sse9I	AATT	5 cut(s)	37, 52, 163, 550, 792
SsiI	CCGC	3 cut(s)	14, 142, 544
SspMI	CTAG	2 cut(s)	324, 336
StyD4I	CCNGG	2 cut(s)	364, 706
TaaI	ACNGT	4 cut(s)	292, 584, 691, 813
TaiI	ACGT	2 cut(s)	110, 384
TaqI	TCGA	1 cut(s)	65
TasI	AATT	5 cut(s)	37, 52, 163, 550, 792
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	2 cut(s)	470, 671
Tru9I	TTAA	2 cut(s)	470, 671
TseFI	GTSAC	2 cut(s)	377, 584
TseI	GCWGC	4 cut(s)	16, 42, 69, 520
Tsp45I	GTSAC	2 cut(s)	377, 584
TspDTI	ATGAA	3 cut(s)	176, 362, 561
TspGWI	ACGGA	1 cut(s)	14
XcmI	CCANNNNNNNNNTGG	2 cut(s)	563, 755
XspI	CTAG	2 cut(s)	324, 336
Zsp2I	ATGCAT	1 cut(s)	640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.