Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000283

Physical Location & Seq

Genomic Coordinates Reverse (-)

29727068 .. 29729489

Gene Structure 2422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00352640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGGACGACAAGGAGTAGTGTACTCTTCTTTTAATAAAAAGGATGGGTCAGGTGTTGGCCTAGTGGCTTGCTTTGCCGGTTTCACCAACAACAAACATTGTAATGTTGGCTATGAAGTTTATCCATTGTATACAACTGAAGCAGTCAAACCTTCACCCCTGCCACAACCTCTGACTCTGCCTCCCCCACCTCCAGGAAAAGACCAAATCTCATCCTTAATCATAGTGGCCATTGTTGTTCCAATTGCCATAGTGCTTTTGTTGGTAGGCTGCTTTTTTCTACGAAGAAAGGCAAGAAAAAAGTGTAATGCTTTACAAGAAAAAAATGTGGGCAATAAAATTCCTACTGTGAAGTCATTGCAGTTTGATTTTGCTACAATTGAAGCAGCCACAAACCAGTTCTCTGTTAATAACAGATTAGGGGAAGGTGGCTTTGGAGAGGTTTACAAGGGAACCCTTCCTAATGGGAAAGAAATAGCTGTGAAGAGGTTATCCAGAAGCTCCGGGCAAGGTGTCAAGGAGTTTGAAAATGAGGTGGTTTTGGTCGCCAAGCTTCAGCACAGAAATTTAGTGAGGGTACTGGGATTTTGCTCTGAAGGAGAAGAAAAGATACTTATCTATGAACTTGTGCAGAACAAAAGCCTTGACCACTTTTTATTCAACTCGGATATTCAAGTAAAGTTGGATTGGTCAAGCAGATACAAGATTATAGATAGGATTGCTAGAGGGATTCTCTACCTCCATCAAGATTCTCGGCTTAAAATCATACATCGCGATCTCAAAGCAAGCAACATATTGTTAGATGGAGAAATGAACCCAAAAATATCAGATTTTGGAATGGCAAGAATATTTGGAGTTGATCAAACTCAAGGAAGAACTAGAAGGATTGTCGGAACTTATGGTTACATGTCTCCAGAGTATGTAACGCATGGACAGTTCTCAGAGAAGTCTGATGTGTATAGTTTTGGTGTCCTAATCTTAGAGATTGTAACAGGCAAGAAAAACACTAAATTATATCAATCAGACCGCGGCGAAGATCTCTTAACCTATGAAGATCCAAAGGAGAGACCTACCATGCAAACCGTAGTTCTCATGCTAAGCAGACACTCATTTACTATGCCATTGCCTCAAAAGCCAGCGTTTTTCCTGTATGGTAAAGCAGAATCGAACATGCCATCAGTAGCAACTGGATCATCATATCAACCCACTAGCAGCTCAATCTCACGTTCTGTTAATGAAGCTTCATCGATTACTGAATTTCCCTCGATAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

424

Amino Acids

47.19

Weight (kDa)

9.3

Isoelectric Point (pI)

41.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	135 - 336	3.9e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	136 - 348	2e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45860 AT4G05200 AT4G05200 AT4G11521 AT4G11530 AT4G23130 AT4G23130 AT4G23130 AT4G23140 AT4G23140 AT4G23150 AT4G23160 AT4G23170 AT4G23180 AT4G23180 AT4G23180 AT4G23230 AT4G23270 AT4G23270 AT4G23270 AT4G23280 AT4G23280 AT4G23280 AT4G23310 AT4G23310
fragaria_vesca	FvH4_3g02772 FvH4_3g02772 FvH4_3g02773 FvH4_3g02773 FvH4_3g02774 FvH4_3g02800 FvH4_3g02820 FvH4_3g02820 FvH4_3g02830
malus_domestica	MD00G1101900.v1.1 MD00G1102100.v1.1 MD00G1102200.v1.1 MD01G1098200.v1.1 MD05G1340000.v1.1 MD05G1340300.v1.1 MD07G1014100.v1.1 MD07G1014300.v1.1 MD07G1014400.v1.1 MD07G1014700.v1.1 MD10G1312900.v1.1 MD11G1022600.v1.1 MD11G1291500.v1.1 MD14G1207100.v1.1 MD16G1096600.v1.1
prunus_persica	Prupe.4G027300_v2.0.a1 Prupe.4G027400_v2.0.a1 Prupe.4G027700_v2.0.a1 Prupe.4G027800_v2.0.a1
pyrus_communis	pycom05g30960 pycom10g00940 pycom10g00950 pycom10g26430 pycom10g26450 pycom10g26460 pycom10g26470 pycom10g26480 pycom10g26490 pycom10g26500 pycom10g26510 pycom10g26570 pycom11g01820 pycom11g04000 pycom14g17130 pycom14g17140 pycom15g28820
rosa_chinensis	RchiOBHm_Chr4g0408141 RchiOBHm_Chr5g0004211 RchiOBHm_Chr5g0004231 RchiOBHm_Chr5g0004241 RchiOBHm_Chr5g0004261
rosa_laevigata	RLG00000008668 RLG00000008672 RLG00000031212 RLG00000031217
rosa_multiflora	Rmu_co8162658.1_g000001 Rmu_co8336297.1_g000001 Rmu_sc0002073.1_g000001 Rmu_sc0004964.1_g000002 Rmu_sc0004964.1_g000003 Rmu_sc0004964.1_g000007 Rmu_sc0006006.1_g000007 Rmu_sc0007868.1_g000015 Rmu_sc0007868.1_g000016 Rmu_sc0007868.1_g000017 Rmu_sc0007868.1_g000021 Rmu_sc0007868.1_g000023 Rmu_sc0019654.1_g000002 Rmu_sc0038540.1_g000001
rosa_roxburghii	Rroxscaffold_1G00071450 Rroxscaffold_1G00071460 Rroxscaffold_1G00071470 Rroxscaffold_1G00071560 Rroxscaffold_1G00071720 Rroxscaffold_1G00071770 Rroxscaffold_5G00352640
rosa_rugosa	Rorug04G0083700 Rorug04G0410700 Rorug04G0410800 Rorug04G0410900
rosa_samantha	Rh4BG145400 Rh4CG154900 Rh4DG141900 Rh5BG037500 Rh5BG037600 Rh5BG037700 Rh5CG041000 Rh5CG041100 Rh5CG041200 Rh5CG041300 Rh5CG041400 Rh5DG037100
rosa_wichuraiana	Rw4G012130 Rw5G003450 Rw5G003460 Rw5G003470 Rw5G003480 Rw5G003640 Rw5G003660 Rw5G003670 Rw5G003680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	131
AccII	CGCG	2 cut(s)	774, 1029
AciI	CCGC	2 cut(s)	1027, 1029
AclWI	GGATC	2 cut(s)	1049, 1198
AcoI	YGGCCR	1 cut(s)	228
AcsI	RAATTY	3 cut(s)	339, 565, 1256
AcuI	CTGAAG	3 cut(s)	159, 539, 615
AfaI	GTAC	2 cut(s)	23, 579
AfiI	CCNNNNNNNGG	1 cut(s)	194
AflIII	ACRYGT	1 cut(s)	906
AgsI	TTSAA	4 cut(s)	383, 527, 661, 674
AjnI	CCWGG	1 cut(s)	193
AjuI	GAANNNNNNNTTGG	2 cut(s)	417, 449
AluBI	AGCT	5 cut(s)	479, 501, 553, 1215, 1241
AluI	AGCT	5 cut(s)	479, 501, 553, 1215, 1241
Alw26I	GTCTC	2 cut(s)	915, 1060
AlwI	GGATC	2 cut(s)	1049, 1198
AoxI	GGCC	2 cut(s)	58, 228
ApeKI	GCWGC	3 cut(s)	270, 386, 1212
ApoI	RAATTY	3 cut(s)	339, 565, 1256
AsuC2I	CCSGG	1 cut(s)	505
AsuHPI	GGTGA	2 cut(s)	76, 147
BalI	TGGCCA	1 cut(s)	230
BarI	GAAGNNNNNNTAC	2 cut(s)	594, 626
BbvI	GCAGC	3 cut(s)	257, 398, 1224
BccI	CCATC	4 cut(s)	38, 750, 797, 1183
BciT130I	CCWGG	1 cut(s)	195
BclI	TGATCA	1 cut(s)	859
BcnI	CCSGG	1 cut(s)	505
BcoDI	GTCTC	2 cut(s)	915, 1060
BfaI	CTAG	4 cut(s)	62, 723, 879, 1209
BglII	AGATCT	1 cut(s)	1036
BisI	GCNGC	4 cut(s)	271, 387, 1030, 1213
BlpI	GCTNAGC	1 cut(s)	1097
BlsI	GCNGC	4 cut(s)	272, 388, 1031, 1214
Bme1390I	CCNGG	2 cut(s)	195, 505
BmiI	GGNNCC	1 cut(s)	454
BmrFI	CCNGG	2 cut(s)	195, 505
BmrI	ACTGGG	1 cut(s)	590
BmuI	ACTGGG	1 cut(s)	590
BplI	GAGNNNNNCTC	2 cut(s)	717, 749
BpmI	CTGGAG	2 cut(s)	177, 897
Bpu1102I	GCTNAGC	1 cut(s)	1097
BpuEI	CTTGAG	1 cut(s)	852
BpuMI	CCSGG	1 cut(s)	505
Bsa29I	ATCGAT	1 cut(s)	1247
BsaBI	GATNNNNATC	1 cut(s)	614
BsaI	GGTCTC	1 cut(s)	1060
BsaJI	CCNNGG	1 cut(s)	1027
BsaXI	ACNNNNNCTCC	2 cut(s)	166, 196
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse118I	RCCGGY	1 cut(s)	77
Bse1I	ACTGG	3 cut(s)	397, 585, 1192
Bse3DI	GCAATG	2 cut(s)	356, 1121
Bse8I	GATNNNNATC	1 cut(s)	614
BseBI	CCWGG	1 cut(s)	195
BseCI	ATCGAT	1 cut(s)	1247
BseDI	CCNNGG	1 cut(s)	1027
BseGI	GGATG	2 cut(s)	49, 212
BseJI	GATNNNNATC	1 cut(s)	614
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMI	GCAATG	2 cut(s)	356, 1121
BseMII	CTCAG	1 cut(s)	954
BseNI	ACTGG	3 cut(s)	397, 585, 1192
BseXI	GCAGC	3 cut(s)	257, 398, 1224
BsgI	GTGCAG	1 cut(s)	650
Bsh1236I	CGCG	2 cut(s)	774, 1029
BshFI	GGCC	2 cut(s)	60, 230
BshVI	ATCGAT	1 cut(s)	1247
BsiSI	CCGG	2 cut(s)	78, 504
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmAI	GTCTC	2 cut(s)	915, 1060
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	2 cut(s)	60, 230
Bso31I	GGTCTC	1 cut(s)	1060
Bsp143I	GATC	5 cut(s)	775, 859, 1036, 1054, 1190
Bsp1720I	GCTNAGC	1 cut(s)	1097
Bsp68I	TCGCGA	1 cut(s)	774
BspACI	CCGC	2 cut(s)	1027, 1029
BspANI	GGCC	2 cut(s)	60, 230
BspCNI	CTCAG	1 cut(s)	953
BspDI	ATCGAT	1 cut(s)	1247
BspFNI	CGCG	2 cut(s)	774, 1029
BspLI	GGNNCC	1 cut(s)	454
BspPI	GGATC	2 cut(s)	1049, 1198
BspTNI	GGTCTC	1 cut(s)	1060
BsrDI	GCAATG	2 cut(s)	356, 1121
BsrFI	RCCGGY	1 cut(s)	77
BsrI	ACTGG	3 cut(s)	397, 585, 1192
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	1027
BssMI	GATC	5 cut(s)	775, 859, 1036, 1054, 1190
BssNAI	GTATAC	1 cut(s)	132
Bst1107I	GTATAC	1 cut(s)	132
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	3 cut(s)	349, 936, 1084
Bst6I	CTCTTC	2 cut(s)	31, 479
BstC8I	GCNNGC	3 cut(s)	70, 787, 1137
BstDEI	CTNAG	3 cut(s)	940, 979, 1097
BstDSI	CCRYGG	1 cut(s)	1027
BstF5I	GGATG	2 cut(s)	49, 212
BstFNI	CGCG	2 cut(s)	774, 1029
BstKTI	GATC	5 cut(s)	778, 862, 1039, 1057, 1193
BstMAI	GTCTC	2 cut(s)	915, 1060
BstMBI	GATC	5 cut(s)	775, 859, 1036, 1054, 1190
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 1132
BstNI	CCWGG	1 cut(s)	195
BstNSI	RCATGY	2 cut(s)	910, 1174
BstSCI	CCNGG	2 cut(s)	193, 503
BstUI	CGCG	2 cut(s)	774, 1029
BstV1I	GCAGC	3 cut(s)	257, 398, 1224
BstX2I	RGATCY	2 cut(s)	1036, 1054
BstYI	RGATCY	2 cut(s)	1036, 1054
BstZ17I	GTATAC	1 cut(s)	132
Bsu15I	ATCGAT	1 cut(s)	1247
BsuRI	GGCC	2 cut(s)	60, 230
BsuTUI	ATCGAT	1 cut(s)	1247
BtgI	CCRYGG	1 cut(s)	1027
BtgZI	GCGATG	1 cut(s)	755
BtsCI	GGATG	2 cut(s)	49, 212
BtuMI	TCGCGA	1 cut(s)	774
Cac8I	GCNNGC	3 cut(s)	70, 787, 1137
Cfr10I	RCCGGY	1 cut(s)	77
Cfr42I	CCGCGG	1 cut(s)	1030
ClaI	ATCGAT	1 cut(s)	1247
Csp6I	GTAC	2 cut(s)	22, 578
CviAII	CATG	5 cut(s)	907, 929, 1075, 1093, 1171
CviQI	GTAC	2 cut(s)	22, 578
DdeI	CTNAG	3 cut(s)	940, 979, 1097
DpnI	GATC	5 cut(s)	777, 861, 1038, 1056, 1192
DpnII	GATC	5 cut(s)	775, 859, 1036, 1054, 1190
EaeI	YGGCCR	1 cut(s)	228
Eam1104I	CTCTTC	2 cut(s)	31, 479
EarI	CTCTTC	2 cut(s)	31, 479
Eco31I	GGTCTC	1 cut(s)	1060
Eco57I	CTGAAG	3 cut(s)	159, 539, 615
EcoRII	CCWGG	1 cut(s)	193
FaeI	CATG	5 cut(s)	910, 932, 1078, 1096, 1174
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	5 cut(s)	906, 928, 1074, 1092, 1170
FbaI	TGATCA	1 cut(s)	859
FblI	GTMKAC	1 cut(s)	131
Fnu4HI	GCNGC	4 cut(s)	271, 387, 1030, 1213
FokI	GGATG	2 cut(s)	56, 199
Fsp4HI	GCNGC	4 cut(s)	271, 387, 1030, 1213
FspBI	CTAG	4 cut(s)	62, 723, 879, 1209
GluI	GCNGC	4 cut(s)	271, 387, 1030, 1213
GsuI	CTGGAG	2 cut(s)	177, 897
HaeIII	GGCC	2 cut(s)	60, 230
HapII	CCGG	2 cut(s)	78, 504
Hin1II	CATG	5 cut(s)	910, 932, 1078, 1096, 1174
HindIII	AAGCTT	2 cut(s)	551, 1239
HinfI	GANTC	4 cut(s)	175, 730, 749, 1163
HpaII	CCGG	2 cut(s)	78, 504
HphI	GGTGA	2 cut(s)	76, 147
Hpy166II	GTNNAC	3 cut(s)	22, 132, 445
Hpy188I	TCNGA	8 cut(s)	174, 595, 667, 829, 893, 943, 952, 1024
Hpy188III	TCNNGA	4 cut(s)	495, 746, 773, 914
Hpy8I	GTNNAC	3 cut(s)	22, 132, 445
HpyAV	CCTTC	5 cut(s)	162, 419, 467, 590, 876
HpyCH4III	ACNGT	3 cut(s)	349, 936, 1084
HpyCH4IV	ACGT	1 cut(s)	1225
HpyCH4V	TGCA	3 cut(s)	361, 631, 1078
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 1132
HpyF3I	CTNAG	3 cut(s)	940, 979, 1097
HpySE526I	ACGT	1 cut(s)	1225
Hsp92II	CATG	5 cut(s)	910, 932, 1078, 1096, 1174
Ksp22I	TGATCA	1 cut(s)	859
KspI	CCGCGG	1 cut(s)	1030
Kzo9I	GATC	5 cut(s)	775, 859, 1036, 1054, 1190
LmnI	GCTCC	1 cut(s)	506
Lsp1109I	GCAGC	3 cut(s)	257, 398, 1224
MaeI	CTAG	4 cut(s)	62, 723, 879, 1209
MaeII	ACGT	1 cut(s)	1225
MaeIII	GTNAC	3 cut(s)	902, 922, 988
MalI	GATC	5 cut(s)	777, 861, 1038, 1056, 1192
MboI	GATC	5 cut(s)	775, 859, 1036, 1054, 1190
MboII	GAAGA	7 cut(s)	18, 297, 496, 614, 885, 1046, 1064
MfeI	CAATTG	2 cut(s)	243, 378
MflI	RGATCY	2 cut(s)	1036, 1054
MlsI	TGGCCA	1 cut(s)	230
MluCI	AATT	6 cut(s)	243, 339, 378, 565, 1010, 1256
MluNI	TGGCCA	1 cut(s)	230
MlyI	GAGTC	1 cut(s)	169
MmeI	TCCRAC	2 cut(s)	663, 871
Mox20I	TGGCCA	1 cut(s)	230
MscI	TGGCCA	1 cut(s)	230
MseI	TTAA	6 cut(s)	33, 218, 408, 759, 1043, 1233
MslI	CAYNNNNRTG	1 cut(s)	102
Msp20I	TGGCCA	1 cut(s)	230
MspA1I	CMGCKG	1 cut(s)	1029
MspI	CCGG	2 cut(s)	78, 504
MspR9I	CCNGG	2 cut(s)	195, 505
MunI	CAATTG	2 cut(s)	243, 378
MvaI	CCWGG	1 cut(s)	195
MvnI	CGCG	2 cut(s)	774, 1029
MwoI	GCNNNNNNNGC	2 cut(s)	74, 1132
NciI	CCSGG	1 cut(s)	505
NdeII	GATC	5 cut(s)	775, 859, 1036, 1054, 1190
NlaIII	CATG	5 cut(s)	910, 932, 1078, 1096, 1174
NlaIV	GGNNCC	1 cut(s)	454
NmeAIII	GCCGAG	1 cut(s)	733
NruI	TCGCGA	1 cut(s)	774
NspI	RCATGY	2 cut(s)	910, 1174
PciI	ACATGT	1 cut(s)	906
PfeI	GAWTC	3 cut(s)	730, 749, 1163
PfoI	TCCNGGA	1 cut(s)	193
PkrI	GCNGC	4 cut(s)	272, 388, 1031, 1214
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PscI	ACATGT	1 cut(s)	906
Psp6I	CCWGG	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	193
PspN4I	GGNNCC	1 cut(s)	454
PsuI	RGATCY	2 cut(s)	1036, 1054
RruI	TCGCGA	1 cut(s)	774
RsaI	GTAC	2 cut(s)	23, 579
RsaNI	GTAC	2 cut(s)	22, 578
RseI	CAYNNNNRTG	1 cut(s)	102
SacII	CCGCGG	1 cut(s)	1030
SaqAI	TTAA	6 cut(s)	33, 218, 408, 759, 1043, 1233
SatI	GCNGC	4 cut(s)	271, 387, 1030, 1213
Sau3AI	GATC	5 cut(s)	775, 859, 1036, 1054, 1190
SchI	GAGTC	1 cut(s)	169
ScrFI	CCNGG	2 cut(s)	195, 505
Sfr303I	CCGCGG	1 cut(s)	1030
SgrBI	CCGCGG	1 cut(s)	1030
SmiMI	CAYNNNNRTG	1 cut(s)	102
SmlI	CTYRAG	1 cut(s)	867
SmoI	CTYRAG	1 cut(s)	867
Sse9I	AATT	6 cut(s)	243, 339, 378, 565, 1010, 1256
SsiI	CCGC	2 cut(s)	1027, 1029
SspI	AATATT	1 cut(s)	849
SspMI	CTAG	4 cut(s)	62, 723, 879, 1209
StyD4I	CCNGG	2 cut(s)	193, 503
TaaI	ACNGT	3 cut(s)	349, 936, 1084
TaiI	ACGT	1 cut(s)	1228
TaqI	TCGA	3 cut(s)	1166, 1247, 1265
TasI	AATT	6 cut(s)	243, 339, 378, 565, 1010, 1256
TatI	WGTACW	1 cut(s)	21
TauI	GCSGC	1 cut(s)	1032
TfiI	GAWTC	3 cut(s)	730, 749, 1163
Tru1I	TTAA	6 cut(s)	33, 218, 408, 759, 1043, 1233
Tru9I	TTAA	6 cut(s)	33, 218, 408, 759, 1043, 1233
TseI	GCWGC	3 cut(s)	270, 386, 1212
TspDTI	ATGAA	6 cut(s)	129, 636, 827, 1065, 1233, 1251
XapI	RAATTY	3 cut(s)	339, 565, 1256
XceI	RCATGY	2 cut(s)	910, 1174
XmiI	GTMKAC	1 cut(s)	131
XspI	CTAG	4 cut(s)	62, 723, 879, 1209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.