Rmu_sc0038540.1_g000001

Domain of unknown function (DUF3403)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038540.1
OG0000283
Physical Location & Seq
Forward (+)
1 .. 2016
2016 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038540.1_g000001.1.cds

Sequence Viewer

Length: 803 bp
atggtaagaagtggaaaaggtggttgactgtcgtgctcccggtggttttcctatcggctcttatttcagtcttcttattctgttatctacgttggagaagaggacctcaaggaattactaggcgagaagggattgtcatttcggatgaagtgagattattccaaattggctccaccaatgcctcaccaattcagtatgatctagctagggttgccaatatgatggaattgagcagatcacagaaggatcaagaactgccattctttactttctctgccatacaaactgcaacaaatgactttgcaaaggctaataaactcggggaaggtggatttgggcctgtctacaaggggaagctattagaaggacaggaaattgcagtgaaaaggttgtctgaactgtcgaggcaagggttggaggagttcaaaaacgaggtcttagtcatttgtaagctccaacacaggaacctggttaggatcttggggtgctgcattgaaggagaagaaagtatactagtttatgagtacatgcccaacaaaagcttagattccttcatttttgatccagccaaacgggtgcttttggattggaaaaagcgcgtgaacattattgatgggatttcacaaggccttctatatcttcacaaatactcaagattacggatcattcaccgcgatctaaagaccagcaatattttgctagacagcgacatgaaccccaaaatttctgattttggcatggcaaggatttttggggacaatgacactagaggaaaaacaaaccgtgttgttggtacattgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

266

Amino Acids

30.42

Weight (kDa)

9.55

Isoelectric Point (pI)

52.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000283)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45860 AT4G05200 AT4G05200 AT4G11521 AT4G11530 AT4G23130 AT4G23130 AT4G23130 AT4G23140 AT4G23140 AT4G23150 AT4G23160 AT4G23170 AT4G23180 AT4G23180 AT4G23180 AT4G23230 AT4G23270 AT4G23270 AT4G23270 AT4G23280 AT4G23280 AT4G23280 AT4G23310 AT4G23310
fragaria_vesca FvH4_3g02772 FvH4_3g02772 FvH4_3g02773 FvH4_3g02773 FvH4_3g02774 FvH4_3g02800 FvH4_3g02820 FvH4_3g02820 FvH4_3g02830
malus_domestica MD00G1101900.v1.1 MD00G1102100.v1.1 MD00G1102200.v1.1 MD01G1098200.v1.1 MD05G1340000.v1.1 MD05G1340300.v1.1 MD07G1014100.v1.1 MD07G1014300.v1.1 MD07G1014400.v1.1 MD07G1014700.v1.1 MD10G1312900.v1.1 MD11G1022600.v1.1 MD11G1291500.v1.1 MD14G1207100.v1.1 MD16G1096600.v1.1
prunus_persica Prupe.4G027300_v2.0.a1 Prupe.4G027400_v2.0.a1 Prupe.4G027700_v2.0.a1 Prupe.4G027800_v2.0.a1
pyrus_communis pycom05g30960 pycom10g00940 pycom10g00950 pycom10g26430 pycom10g26450 pycom10g26460 pycom10g26470 pycom10g26480 pycom10g26490 pycom10g26500 pycom10g26510 pycom10g26570 pycom11g01820 pycom11g04000 pycom14g17130 pycom14g17140 pycom15g28820
rosa_chinensis RchiOBHm_Chr4g0408141 RchiOBHm_Chr5g0004211 RchiOBHm_Chr5g0004231 RchiOBHm_Chr5g0004241 RchiOBHm_Chr5g0004261
rosa_laevigata RLG00000008668 RLG00000008672 RLG00000031212 RLG00000031217
rosa_multiflora Rmu_co8162658.1_g000001 Rmu_co8336297.1_g000001 Rmu_sc0002073.1_g000001 Rmu_sc0004964.1_g000002 Rmu_sc0004964.1_g000003 Rmu_sc0004964.1_g000007 Rmu_sc0006006.1_g000007 Rmu_sc0007868.1_g000015 Rmu_sc0007868.1_g000016 Rmu_sc0007868.1_g000017 Rmu_sc0007868.1_g000021 Rmu_sc0007868.1_g000023 Rmu_sc0019654.1_g000002 Rmu_sc0038540.1_g000001
rosa_roxburghii Rroxscaffold_1G00071450 Rroxscaffold_1G00071460 Rroxscaffold_1G00071470 Rroxscaffold_1G00071560 Rroxscaffold_1G00071720 Rroxscaffold_1G00071770 Rroxscaffold_5G00352640
rosa_rugosa Rorug04G0083700 Rorug04G0410700 Rorug04G0410800 Rorug04G0410900
rosa_samantha Rh4BG145400 Rh4CG154900 Rh4DG141900 Rh5BG037500 Rh5BG037600 Rh5BG037700 Rh5CG041000 Rh5CG041100 Rh5CG041200 Rh5CG041300 Rh5CG041400 Rh5DG037100
rosa_wichuraiana Rw4G012130 Rw5G003450 Rw5G003460 Rw5G003470 Rw5G003480 Rw5G003640 Rw5G003660 Rw5G003670 Rw5G003680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 344, 510
AccII CGCG 2 cut(s) 599, 674
AciI CCGC 1 cut(s) 672
AclWI GGATC 4 cut(s) 254, 484, 556, 670
AcsI RAATTY 1 cut(s) 722
AfaI GTAC 2 cut(s) 526, 795
AgsI TTSAA 2 cut(s) 426, 496
AhlI ACTAGT 1 cut(s) 513
AjnI CCWGG 1 cut(s) 467
AjuI GAANNNNNNNTTGG 2 cut(s) 317, 349
AluBI AGCT 4 cut(s) 205, 357, 453, 542
AluI AGCT 4 cut(s) 205, 357, 453, 542
Alw21I GWGCWC 1 cut(s) 38
AlwI GGATC 4 cut(s) 254, 484, 556, 670
Ama87I CYCGRG 1 cut(s) 319
AoxI GGCC 2 cut(s) 337, 627
ApeKI GCWGC 1 cut(s) 488
ApoI RAATTY 1 cut(s) 722
ArsI GACNNNNNNTTYG 2 cut(s) 419, 451
AspLEI GCGC 1 cut(s) 599
AspS9I GGNCC 2 cut(s) 103, 337
AsuC2I CCSGG 1 cut(s) 40
AsuHPI GGTGA 2 cut(s) 176, 661
AvaI CYCGRG 1 cut(s) 319
AvaII GGWCC 1 cut(s) 103
BarI GAAGNNNNNNTAC 2 cut(s) 494, 526
BbsI GAAGAC 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 38
BbvI GCAGC 1 cut(s) 475
BccI CCATC 2 cut(s) 216, 607
BciT130I CCWGG 1 cut(s) 469
BcnI CCSGG 1 cut(s) 40
BcuI ACTAGT 1 cut(s) 513
BfaI CTAG 6 cut(s) 119, 202, 206, 514, 700, 767
BisI GCNGC 1 cut(s) 489
BlsI GCNGC 1 cut(s) 490
Bme1390I CCNGG 2 cut(s) 40, 469
Bme18I GGWCC 1 cut(s) 103
BmeT110I CYCGRG 1 cut(s) 319
BmgT120I GGNCC 2 cut(s) 103, 337
BmiI GGNNCC 2 cut(s) 171, 466
BmrFI CCNGG 2 cut(s) 40, 469
BpiI GAAGAC 1 cut(s) 63
BpuEI CTTGAG 2 cut(s) 92, 636
BpuMI CCSGG 1 cut(s) 40
BseBI CCWGG 1 cut(s) 469
BseGI GGATG 1 cut(s) 150
BseRI GAGGAG 1 cut(s) 433
BseXI GCAGC 1 cut(s) 475
Bsh1236I CGCG 2 cut(s) 599, 674
BshFI GGCC 2 cut(s) 339, 629
BsiHKAI GWGCWC 1 cut(s) 38
BsiHKCI CYCGRG 1 cut(s) 319
BsiSI CCGG 1 cut(s) 40
BslFI GGGAC 1 cut(s) 769
BsmFI GGGAC 1 cut(s) 769
BsnI GGCC 2 cut(s) 339, 629
BsoBI CYCGRG 1 cut(s) 319
Bsp1286I GDGCHC 1 cut(s) 38
Bsp143I GATC 7 cut(s) 198, 235, 246, 476, 561, 662, 675
BspACI CCGC 1 cut(s) 672
BspANI GGCC 2 cut(s) 339, 629
BspFNI CGCG 2 cut(s) 599, 674
BspLI GGNNCC 2 cut(s) 171, 466
BspPI GGATC 4 cut(s) 254, 484, 556, 670
BssMI GATC 7 cut(s) 198, 235, 246, 476, 561, 662, 675
BssNAI GTATAC 1 cut(s) 511
Bst1107I GTATAC 1 cut(s) 511
Bst2UI CCWGG 1 cut(s) 469
Bst4CI ACNGT 3 cut(s) 30, 401, 784
Bst6I CTCTTC 1 cut(s) 93
BstDEI CTNAG 2 cut(s) 438, 543
BstF5I GGATG 1 cut(s) 150
BstFNI CGCG 2 cut(s) 599, 674
BstHHI GCGC 1 cut(s) 599
BstKTI GATC 7 cut(s) 201, 238, 249, 479, 564, 665, 678
BstMBI GATC 7 cut(s) 198, 235, 246, 476, 561, 662, 675
BstMWI GCNNNNNNNGC 1 cut(s) 211
BstNI CCWGG 1 cut(s) 469
BstNSI RCATGY 1 cut(s) 531
BstSCI CCNGG 2 cut(s) 38, 467
BstUI CGCG 2 cut(s) 599, 674
BstV1I GCAGC 1 cut(s) 475
BstV2I GAAGAC 1 cut(s) 63
BstX2I RGATCY 1 cut(s) 476
BstXI CCANNNNNNTGG 1 cut(s) 222
BstYI RGATCY 1 cut(s) 476
BstZ17I GTATAC 1 cut(s) 511
BsuRI GGCC 2 cut(s) 339, 629
BtsCI GGATG 1 cut(s) 150
BtsI GCAGTG 1 cut(s) 386
BtsIMutI CAGTG 1 cut(s) 386
CfoI GCGC 1 cut(s) 599
Cfr13I GGNCC 2 cut(s) 103, 337
CsiI ACCWGGT 1 cut(s) 467
Csp6I GTAC 2 cut(s) 525, 794
CviAII CATG 3 cut(s) 528, 711, 738
CviQI GTAC 2 cut(s) 525, 794
DdeI CTNAG 2 cut(s) 438, 543
DpnI GATC 7 cut(s) 200, 237, 248, 478, 563, 664, 677
DpnII GATC 7 cut(s) 198, 235, 246, 476, 561, 662, 675
Eam1104I CTCTTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 93
Eco147I AGGCCT 1 cut(s) 629
Eco47I GGWCC 1 cut(s) 103
Eco88I CYCGRG 1 cut(s) 319
EcoO109I RGGNCCY 1 cut(s) 103
EcoRII CCWGG 1 cut(s) 467
FaeI CATG 3 cut(s) 531, 714, 741
FaiI YATR 9 cut(s) 197, 220, 280, 511, 521, 529, 636, 712, 739
FaqI GGGAC 1 cut(s) 769
FatI CATG 3 cut(s) 527, 710, 737
FblI GTMKAC 2 cut(s) 344, 510
Fnu4HI GCNGC 1 cut(s) 489
FokI GGATG 1 cut(s) 157
Fsp4HI GCNGC 1 cut(s) 489
FspBI CTAG 6 cut(s) 119, 202, 206, 514, 700, 767
GlaI GCGC 1 cut(s) 598
GluI GCNGC 1 cut(s) 489
HaeIII GGCC 2 cut(s) 339, 629
HapII CCGG 1 cut(s) 40
HhaI GCGC 1 cut(s) 599
Hin1II CATG 3 cut(s) 531, 714, 741
Hin6I GCGC 1 cut(s) 597
HinP1I GCGC 1 cut(s) 597
HincII GTYRAC 1 cut(s) 26
HindII GTYRAC 1 cut(s) 26
HindIII AAGCTT 1 cut(s) 540
HinfI GANTC 1 cut(s) 547
HpaII CCGG 1 cut(s) 40
HphI GGTGA 2 cut(s) 176, 661
Hpy166II GTNNAC 4 cut(s) 26, 345, 511, 603
Hpy188I TCNGA 3 cut(s) 144, 396, 729
Hpy188III TCNNGA 2 cut(s) 250, 653
Hpy8I GTNNAC 4 cut(s) 26, 345, 511, 603
HpyAV CCTTC 7 cut(s) 121, 237, 319, 358, 490, 561, 640
HpyCH4III ACNGT 3 cut(s) 30, 401, 784
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 4 cut(s) 289, 304, 379, 491
HpyF10VI GCNNNNNNNGC 1 cut(s) 211
HpyF3I CTNAG 2 cut(s) 438, 543
HpySE526I ACGT 1 cut(s) 90
Hsp92II CATG 3 cut(s) 531, 714, 741
HspAI GCGC 1 cut(s) 597
Kzo9I GATC 7 cut(s) 198, 235, 246, 476, 561, 662, 675
LmnI GCTCC 3 cut(s) 41, 175, 458
LpnPI CCDG 8 cut(s) 53, 353, 355, 447, 454, 481, 578, 699
Lsp1109I GCAGC 1 cut(s) 475
MabI ACCWGGT 1 cut(s) 467
MaeI CTAG 6 cut(s) 119, 202, 206, 514, 700, 767
MaeII ACGT 1 cut(s) 90
MalI GATC 7 cut(s) 200, 237, 248, 478, 563, 664, 677
MboI GATC 7 cut(s) 198, 235, 246, 476, 561, 662, 675
MboII GAAGA 4 cut(s) 63, 110, 514, 631
MflI RGATCY 1 cut(s) 476
MhlI GDGCHC 1 cut(s) 38
MluCI AATT 6 cut(s) 113, 164, 188, 226, 374, 722
MmeI TCCRAC 3 cut(s) 73, 395, 480
MnlI CCTC 7 cut(s) 94, 116, 192, 398, 411, 426, 763
MspI CCGG 1 cut(s) 40
MspR9I CCNGG 2 cut(s) 40, 469
MvaI CCWGG 1 cut(s) 469
MvnI CGCG 2 cut(s) 599, 674
MwoI GCNNNNNNNGC 1 cut(s) 211
NciI CCSGG 1 cut(s) 40
NdeII GATC 7 cut(s) 198, 235, 246, 476, 561, 662, 675
NlaIII CATG 3 cut(s) 531, 714, 741
NlaIV GGNNCC 2 cut(s) 171, 466
NspI RCATGY 1 cut(s) 531
PceI AGGCCT 1 cut(s) 629
PfeI GAWTC 1 cut(s) 547
PkrI GCNGC 1 cut(s) 490
PpuMI RGGWCCY 1 cut(s) 103
Psp5II RGGWCCY 1 cut(s) 103
Psp6I CCWGG 1 cut(s) 467
PspGI CCWGG 1 cut(s) 467
PspN4I GGNNCC 2 cut(s) 171, 466
PspPI GGNCC 2 cut(s) 103, 337
PspPPI RGGWCCY 1 cut(s) 103
PsuI RGATCY 1 cut(s) 476
RsaI GTAC 2 cut(s) 526, 795
RsaNI GTAC 2 cut(s) 525, 794
SatI GCNGC 1 cut(s) 489
Sau3AI GATC 7 cut(s) 198, 235, 246, 476, 561, 662, 675
Sau96I GGNCC 2 cut(s) 103, 337
ScrFI CCNGG 2 cut(s) 40, 469
SduI GDGCHC 1 cut(s) 38
SexAI ACCWGGT 1 cut(s) 467
SinI GGWCC 1 cut(s) 103
SmlI CTYRAG 2 cut(s) 107, 651
SmoI CTYRAG 2 cut(s) 107, 651
SpeI ACTAGT 1 cut(s) 513
Sse9I AATT 6 cut(s) 113, 164, 188, 226, 374, 722
SseBI AGGCCT 1 cut(s) 629
SsiI CCGC 1 cut(s) 672
SspI AATATT 1 cut(s) 693
SspMI CTAG 6 cut(s) 119, 202, 206, 514, 700, 767
StuI AGGCCT 1 cut(s) 629
StyD4I CCNGG 2 cut(s) 38, 467
TaaI ACNGT 3 cut(s) 30, 401, 784
TaiI ACGT 1 cut(s) 93
TaqI TCGA 1 cut(s) 403
TasI AATT 6 cut(s) 113, 164, 188, 226, 374, 722
TatI WGTACW 1 cut(s) 524
TfiI GAWTC 1 cut(s) 547
TscAI CASTG 1 cut(s) 386
TseI GCWGC 1 cut(s) 488
TspDTI ATGAA 3 cut(s) 161, 543, 727
TspGWI ACGGA 1 cut(s) 675
TspRI CASTG 1 cut(s) 386
VpaK11BI GGWCC 1 cut(s) 103
XapI RAATTY 1 cut(s) 722
XceI RCATGY 1 cut(s) 531
XmiI GTMKAC 2 cut(s) 344, 510
XspI CTAG 6 cut(s) 119, 202, 206, 514, 700, 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.