AT4G38540

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000348
Physical Location & Seq
Forward (+)
18023121 .. 18025027
1907 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G38540.1

Sequence Viewer

Length: 1224 bp
ATGGAAGAAGAAGGCAGCCCAGATATCATCATCGTTGGCGCCGGTATCTCCGGCCTTTCCACCGCTGTTGGACTACACAGGCTTGGGATCAGAAGCATGGTGCTGGAATCTTCGGAGACACTGAGAGCGACAGGATTTGCATTTACCACTTGGTTCAATGCTTGGAAGGCCATGGAAGCTCTCGGCGTTTCTCAGCATATTCGCAGTCTCCATGATCGCCTTGAAGGATGGGTGGTTGGAACAATTTCTGCAGGAACTCCTCCCACAGAGATGCTGTTTCCAGAATCCGAAGAATATGAGTCTCGATGCGTACAGAGGAAGCTGTTGTTAGAGGCTCTAGCAGGTGAGTTGCCTGAAGAGACCATCAGGTTTTCGTCTAAGGTTGTTCATATTGAATTGTCTGGATGCTACAAGAAGGTTCATCTCTCCGACGGGACCATTCTCAAAACCAAGGTTTTGGTAGGGTGCGATGGAGTGTACTCAGTGGTTGGTAAGTGGCTAGGCTTCAAAAATCCCGCTACAACTGCCCGGTTAGCAATCCGAGGGCTCACACATTTTCCGGAAGGCCATGGATTTGGGAAAAGGTTCTTCCAGTTTTATGGAGACGGCGTTCGTTCCGGTTTTATCCCATGTGACCACAACACTGTCTACTGGTTCCTAACCCACACCTCCACTGATATAGATGAGGAGACAAATTCGGAAATCCTCAAAGAGTTTGTGCTGAACAAGATCAAAGACTTGCCTGAAAACATTAAGAATGTGGTGGAGACCACTGATCTTGATAGCATGGTGATGTCTCAACTGAAGTACCGACCTCCATGGGAACTGCTATGGTCAAACATCACAAAAGACAACGTGTGCGTTGCAGGAGATGCACTTCACCCAATGACTCCTGATATCGGACAAGGAGGTTGCTCAGCCATGGAGGATGGAGTTATCCTTGCTCGTTGTCTAGGTGAAGCGATAAAGGCAAAGAGTCTGAAAGGTGAAACAGAAGAAAATGAAGAAGAGGGTTATAAGAGGATTGAAGAAGGTTTGAAGAAGTATGCAGGAGAAAGGAAATGGAGAAGCATTGATCTTATAACAACGGCATATACAGTAGGATTCATACAGCAGAGCAGAGGGAAGTGGATGAACATGTTCAGAGACAGGTTCCTGTCGTCTTACCTTTCTAGGATGCTGCTGAAAAAGTCCCATTTCGATTGCGGAAGCCTTGTCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002239 GO:0003674 GO:0003824 GO:0004497 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0016491 GO:0019748 GO:0043207 GO:0044550 GO:0050896 GO:0051704 GO:0051707 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

407

Amino Acids

45.5

Weight (kDa)

5.94

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 8 - 324 3.5e-22 FAD binding domain
DAO PF01266 8 - 57 7.7e-06 FAD dependent oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1017, 1082
AarI CACCTGC 1 cut(s) 332
Acc36I ACCTGC 1 cut(s) 332
AccB1I GGYRCC 1 cut(s) 38
AccI GTMKAC 1 cut(s) 648
AccIII TCCGGA 1 cut(s) 559
AciI CCGC 3 cut(s) 63, 516, 1206
AclWI GGATC 1 cut(s) 95
AcsI RAATTY 1 cut(s) 694
AcuI CTGAAG 2 cut(s) 375, 824
AcyI GRCGYC 1 cut(s) 39
AfaI GTAC 3 cut(s) 312, 479, 809
AfiI CCNNNNNNNGG 1 cut(s) 899
AflIII ACRYGT 2 cut(s) 855, 1137
AgsI TTSAA 6 cut(s) 157, 224, 395, 508, 1028, 1039
AloI GAACNNNNNNTCC 2 cut(s) 594, 626
AluBI AGCT 2 cut(s) 179, 322
AluI AGCT 2 cut(s) 179, 322
Alw26I GTCTC 9 cut(s) 110, 212, 306, 353, 597, 683, 761, 801, 1140
AlwI GGATC 1 cut(s) 95
Aor13HI TCCGGA 1 cut(s) 559
AoxI GGCC 3 cut(s) 52, 168, 565
ApeKI GCWGC 2 cut(s) 15, 1180
ApoI RAATTY 1 cut(s) 694
Asp700I GAANNNNTTC 3 cut(s) 244, 584, 1139
AspLEI GCGC 1 cut(s) 41
AspS9I GGNCC 1 cut(s) 435
AsuC2I CCSGG 1 cut(s) 529
AsuHPI GGTGA 5 cut(s) 356, 802, 872, 968, 998
AvaII GGWCC 1 cut(s) 435
BaeI ACNNNNGTAYC 2 cut(s) 791, 824
BanI GGYRCC 1 cut(s) 38
BanII GRGCYC 1 cut(s) 549
BbvI GCAGC 2 cut(s) 27, 1167
BccI CCATC 4 cut(s) 222, 371, 464, 923
BceAI ACGGC 2 cut(s) 622, 1104
BcnI CCSGG 1 cut(s) 529
BcoDI GTCTC 9 cut(s) 110, 212, 306, 353, 597, 683, 761, 801, 1140
BfaI CTAG 4 cut(s) 338, 500, 953, 1173
BfmI CTRYAG 1 cut(s) 249
BfoI RGCGCY 1 cut(s) 42
BfuAI ACCTGC 1 cut(s) 332
BisI GCNGC 2 cut(s) 16, 1181
BlpI GCTNAGC 1 cut(s) 916
BlsI GCNGC 2 cut(s) 17, 1182
Bme1390I CCNGG 1 cut(s) 529
Bme18I GGWCC 1 cut(s) 435
BmgT120I GGNCC 1 cut(s) 435
BmiI GGNNCC 4 cut(s) 40, 436, 656, 1154
BmrFI CCNGG 1 cut(s) 529
BmsI GCATC 5 cut(s) 261, 296, 395, 862, 1167
Bpu1102I GCTNAGC 1 cut(s) 916
BpuMI CCSGG 1 cut(s) 529
BsaHI GRCGYC 1 cut(s) 39
BsaI GGTCTC 2 cut(s) 353, 761
BsaJI CCNNGG 6 cut(s) 171, 450, 541, 568, 818, 921
BsaWI WCCGGW 2 cut(s) 559, 617
BsaXI ACNNNNNCTCC 2 cut(s) 594, 624
Bsc4I CCNNNNNNNGG 1 cut(s) 899
Bse118I RCCGGY 1 cut(s) 41
Bse1I ACTGG 2 cut(s) 592, 656
BseAI TCCGGA 1 cut(s) 559
BseDI CCNNGG 6 cut(s) 171, 450, 541, 568, 818, 921
BseGI GGATG 5 cut(s) 233, 410, 934, 1137, 1182
BseLI CCNNNNNNNGG 1 cut(s) 899
BseMII CTCAG 4 cut(s) 113, 206, 495, 930
BseNI ACTGG 2 cut(s) 592, 656
BseRI GAGGAG 2 cut(s) 249, 701
BseXI GCAGC 2 cut(s) 27, 1167
BshFI GGCC 3 cut(s) 54, 170, 567
BshNI GGYRCC 1 cut(s) 38
BsiSI CCGG 5 cut(s) 42, 51, 529, 560, 618
BslFI GGGAC 3 cut(s) 448, 1177, 1202
BslI CCNNNNNNNGG 1 cut(s) 899
BsmAI GTCTC 9 cut(s) 110, 212, 306, 353, 597, 683, 761, 801, 1140
BsmBI CGTCTC 1 cut(s) 597
BsmFI GGGAC 3 cut(s) 448, 1177, 1202
BsnI GGCC 3 cut(s) 54, 170, 567
Bso31I GGTCTC 2 cut(s) 353, 761
Bsp1286I GDGCHC 1 cut(s) 549
Bsp13I TCCGGA 1 cut(s) 559
Bsp143I GATC 5 cut(s) 87, 214, 729, 775, 1075
Bsp1720I GCTNAGC 1 cut(s) 916
Bsp19I CCATGG 4 cut(s) 171, 568, 818, 921
BspACI CCGC 3 cut(s) 63, 516, 1206
BspANI GGCC 3 cut(s) 54, 170, 567
BspCNI CTCAG 4 cut(s) 114, 205, 494, 929
BspEI TCCGGA 1 cut(s) 559
BspLI GGNNCC 4 cut(s) 40, 436, 656, 1154
BspMAI CTGCAG 1 cut(s) 253
BspMI ACCTGC 1 cut(s) 332
BspPI GGATC 1 cut(s) 95
BspT107I GGYRCC 1 cut(s) 38
BspTNI GGTCTC 2 cut(s) 353, 761
BsrFI RCCGGY 1 cut(s) 41
BsrI ACTGG 2 cut(s) 592, 656
BssAI RCCGGY 1 cut(s) 41
BssECI CCNNGG 6 cut(s) 171, 450, 541, 568, 818, 921
BssMI GATC 5 cut(s) 87, 214, 729, 775, 1075
BssNI GRCGYC 1 cut(s) 39
BssT1I CCWWGG 5 cut(s) 171, 450, 568, 818, 921
Bst4CI ACNGT 2 cut(s) 646, 1099
Bst6I CTCTTC 2 cut(s) 351, 1002
BstACI GRCGYC 1 cut(s) 39
BstAPI GCANNNNNTGC 1 cut(s) 872
BstDEI CTNAG 5 cut(s) 122, 192, 378, 481, 916
BstDSI CCRYGG 4 cut(s) 171, 568, 818, 921
BstF5I GGATG 5 cut(s) 233, 410, 934, 1137, 1182
BstH2I RGCGCY 1 cut(s) 42
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 5 cut(s) 90, 217, 732, 778, 1078
BstMAI GTCTC 9 cut(s) 110, 212, 306, 353, 597, 683, 761, 801, 1140
BstMBI GATC 5 cut(s) 87, 214, 729, 775, 1075
BstMWI GCNNNNNNNGC 6 cut(s) 167, 176, 524, 533, 872, 968
BstNSI RCATGY 1 cut(s) 1141
BstSCI CCNGG 1 cut(s) 527
BstSFI CTRYAG 1 cut(s) 249
BstV1I GCAGC 2 cut(s) 27, 1167
BstXI CCANNNNNNTGG 3 cut(s) 457, 575, 599
BsuRI GGCC 3 cut(s) 54, 170, 567
BtgI CCRYGG 4 cut(s) 171, 568, 818, 921
BtgZI GCGATG 1 cut(s) 483
BtsCI GGATG 5 cut(s) 233, 410, 934, 1137, 1182
BtsIMutI CAGTG 5 cut(s) 119, 489, 642, 672, 771
BveI ACCTGC 1 cut(s) 332
CfoI GCGC 1 cut(s) 41
Cfr10I RCCGGY 1 cut(s) 41
Cfr13I GGNCC 1 cut(s) 435
Csp6I GTAC 3 cut(s) 311, 478, 808
CspCI CAANNNNNGTGG 4 cut(s) 49, 84, 760, 795
CviQI GTAC 3 cut(s) 311, 478, 808
DdeI CTNAG 5 cut(s) 122, 192, 378, 481, 916
DinI GGCGCC 1 cut(s) 40
DpnI GATC 5 cut(s) 89, 216, 731, 777, 1077
DpnII GATC 5 cut(s) 87, 214, 729, 775, 1075
Eam1104I CTCTTC 2 cut(s) 351, 1002
EarI CTCTTC 2 cut(s) 351, 1002
Eco130I CCWWGG 5 cut(s) 171, 450, 568, 818, 921
Eco24I GRGCYC 1 cut(s) 549
Eco31I GGTCTC 2 cut(s) 353, 761
Eco32I GATATC 2 cut(s) 25, 898
Eco47I GGWCC 1 cut(s) 435
Eco57I CTGAAG 2 cut(s) 375, 824
EcoRV GATATC 2 cut(s) 25, 898
EcoT14I CCWWGG 5 cut(s) 171, 450, 568, 818, 921
EcoT38I GRGCYC 1 cut(s) 549
EgeI GGCGCC 1 cut(s) 40
EheI GGCGCC 1 cut(s) 40
ErhI CCWWGG 5 cut(s) 171, 450, 568, 818, 921
Esp3I CGTCTC 1 cut(s) 597
FaqI GGGAC 3 cut(s) 448, 1177, 1202
FauI CCCGC 1 cut(s) 523
FblI GTMKAC 1 cut(s) 648
Fnu4HI GCNGC 2 cut(s) 16, 1181
FokI GGATG 5 cut(s) 240, 417, 941, 1144, 1189
FriOI GRGCYC 1 cut(s) 549
Fsp4HI GCNGC 2 cut(s) 16, 1181
FspBI CTAG 4 cut(s) 338, 500, 953, 1173
GlaI GCGC 1 cut(s) 40
GluI GCNGC 2 cut(s) 16, 1181
HaeII RGCGCY 1 cut(s) 42
HaeIII GGCC 3 cut(s) 54, 170, 567
HapII CCGG 5 cut(s) 42, 51, 529, 560, 618
HhaI GCGC 1 cut(s) 41
Hin1I GRCGYC 1 cut(s) 39
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HinfI GANTC 6 cut(s) 107, 284, 299, 889, 976, 1104
HpaII CCGG 5 cut(s) 42, 51, 529, 560, 618
HphI GGTGA 5 cut(s) 356, 802, 872, 968, 998
Hpy166II GTNNAC 2 cut(s) 478, 649
Hpy188I TCNGA 9 cut(s) 92, 115, 289, 430, 542, 700, 902, 981, 1145
Hpy188III TCNNGA 6 cut(s) 281, 303, 402, 560, 779, 893
Hpy8I GTNNAC 2 cut(s) 478, 649
Hpy99I CGWCG 1 cut(s) 434
HpyAV CCTTC 6 cut(s) 5, 160, 218, 409, 557, 1025
HpyCH4III ACNGT 2 cut(s) 646, 1099
HpyCH4IV ACGT 1 cut(s) 855
HpyCH4V TGCA 5 cut(s) 140, 251, 866, 875, 1049
HpyF10VI GCNNNNNNNGC 6 cut(s) 167, 176, 524, 533, 872, 968
HpyF3I CTNAG 5 cut(s) 122, 192, 378, 481, 916
HpySE526I ACGT 1 cut(s) 855
Hsp92I GRCGYC 1 cut(s) 39
HspAI GCGC 1 cut(s) 39
KasI GGCGCC 1 cut(s) 38
Kpn2I TCCGGA 1 cut(s) 559
Kzo9I GATC 5 cut(s) 87, 214, 729, 775, 1075
Lsp1109I GCAGC 2 cut(s) 27, 1167
LweI GCATC 5 cut(s) 261, 296, 395, 862, 1167
MaeI CTAG 4 cut(s) 338, 500, 953, 1173
MaeII ACGT 1 cut(s) 855
MaeIII GTNAC 1 cut(s) 632
MalI GATC 5 cut(s) 89, 216, 731, 777, 1077
MboI GATC 5 cut(s) 87, 214, 729, 775, 1075
MhlI GDGCHC 1 cut(s) 549
MluCI AATT 3 cut(s) 243, 395, 694
Mly113I GGCGCC 1 cut(s) 39
MlyI GAGTC 3 cut(s) 308, 883, 985
MmeI TCCRAC 3 cut(s) 49, 217, 453
MroI TCCGGA 1 cut(s) 559
MroXI GAANNNNTTC 3 cut(s) 244, 584, 1139
MseI TTAA 1 cut(s) 753
MslI CAYNNNNRTG 2 cut(s) 269, 791
MspA1I CMGCKG 1 cut(s) 65
MspI CCGG 5 cut(s) 42, 51, 529, 560, 618
MspR9I CCNGG 1 cut(s) 529
MwoI GCNNNNNNNGC 6 cut(s) 167, 176, 524, 533, 872, 968
NarI GGCGCC 1 cut(s) 39
NciI CCSGG 1 cut(s) 529
NcoI CCATGG 4 cut(s) 171, 568, 818, 921
NdeII GATC 5 cut(s) 87, 214, 729, 775, 1075
NlaIV GGNNCC 4 cut(s) 40, 436, 656, 1154
NmeAIII GCCGAG 1 cut(s) 162
NmuCI GTSAC 1 cut(s) 632
NspI RCATGY 1 cut(s) 1141
PaqCI CACCTGC 1 cut(s) 332
PciI ACATGT 1 cut(s) 1137
PdmI GAANNNNTTC 3 cut(s) 244, 584, 1139
PfeI GAWTC 3 cut(s) 107, 284, 1104
PkrI GCNGC 2 cut(s) 17, 1182
PleI GAGTC 3 cut(s) 307, 883, 984
PluTI GGCGCC 1 cut(s) 42
PpsI GAGTC 3 cut(s) 307, 883, 984
PscI ACATGT 1 cut(s) 1137
PsiI TTATAA 2 cut(s) 1017, 1082
PspN4I GGNNCC 4 cut(s) 40, 436, 656, 1154
PspPI GGNCC 1 cut(s) 435
PstI CTGCAG 1 cut(s) 253
RsaI GTAC 3 cut(s) 312, 479, 809
RsaNI GTAC 3 cut(s) 311, 478, 808
RseI CAYNNNNRTG 2 cut(s) 269, 791
SaqAI TTAA 1 cut(s) 753
SatI GCNGC 2 cut(s) 16, 1181
Sau3AI GATC 5 cut(s) 87, 214, 729, 775, 1075
Sau96I GGNCC 1 cut(s) 435
SchI GAGTC 3 cut(s) 308, 883, 985
ScrFI CCNGG 1 cut(s) 529
SduI GDGCHC 1 cut(s) 549
SfaNI GCATC 5 cut(s) 261, 296, 395, 862, 1167
SfcI CTRYAG 1 cut(s) 249
SfoI GGCGCC 1 cut(s) 40
SinI GGWCC 1 cut(s) 435
SmiMI CAYNNNNRTG 2 cut(s) 269, 791
Sse9I AATT 3 cut(s) 243, 395, 694
SsiI CCGC 3 cut(s) 63, 516, 1206
SspDI GGCGCC 1 cut(s) 38
SspMI CTAG 4 cut(s) 338, 500, 953, 1173
StyD4I CCNGG 1 cut(s) 527
StyI CCWWGG 5 cut(s) 171, 450, 568, 818, 921
TaaI ACNGT 2 cut(s) 646, 1099
TaiI ACGT 1 cut(s) 858
TaqI TCGA 2 cut(s) 304, 1200
TasI AATT 3 cut(s) 243, 395, 694
TatI WGTACW 1 cut(s) 477
TfiI GAWTC 3 cut(s) 107, 284, 1104
Tru1I TTAA 1 cut(s) 753
Tru9I TTAA 1 cut(s) 753
TscAI CASTG 5 cut(s) 126, 489, 649, 679, 778
TseFI GTSAC 1 cut(s) 632
TseI GCWGC 2 cut(s) 15, 1180
Tsp45I GTSAC 1 cut(s) 632
TspDTI ATGAA 5 cut(s) 377, 410, 1017, 1096, 1148
TspRI CASTG 5 cut(s) 126, 489, 649, 679, 778
VpaK11BI GGWCC 1 cut(s) 435
XapI RAATTY 1 cut(s) 694
XceI RCATGY 1 cut(s) 1141
XmiI GTMKAC 1 cut(s) 648
XmnI GAANNNNTTC 3 cut(s) 244, 584, 1139
XspI CTAG 4 cut(s) 338, 500, 953, 1173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.