Rw4G037090

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000348
Physical Location & Seq
Forward (+)
63811424 .. 63815905
4482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G037090.1

Sequence Viewer

Length: 1230 bp
ATGGAGGACGTTGTGATTGTGGGAGCTGGAATTTCTGGCCTCACAACCGCCCTGGGACTTCACAGGCTGGGCATTAGGAGCGTAGTGCTGGAATCGTTTGATAGCTTGAGGATAACAGGGTTTGCACTCGGAATATGGACTAATGCGTGGAGGGCTTTAGATGCCATTGGTGTTGGTGATCATTTACGGCAGCAACATCACACTGTTGTTGGGAATGTGGTTTTCTCGAGAATTTCAGGGCTTCAGATGTTTAAGGTGTCATATAAGGCGAAAGGAAAACAAGACCATGAAATGCGTTGTGTGAAAAGGAAGTTGCTGTTGGAAGCCCTTGCAAGTGAACTTCCTAGCGGCACCATTAGGTTCTCTTCAAAAGTTGTTTCCATTGAGGAATCAGGCTACTTTAAGCTGGTGCATCTTGCTGACGGAACCATCCTCAAAGCCAAGGTTTTGGTTGGATGTGATGGAGTAAACTCAGTGGTTGCAAAATGGCTGGGTTTCAAGCCGCCGGTCTTTACAGGAAGATCTGCCATTCGAGGTTGTGCTGAGTTCAAGAGCAGCCATGAGTTTGATCCCATGTTAATGCAGTACCTTGGGAATGGTGTTAGATCTGGTACCGTTCCTTGTGATGATAAATATGTTTACTGGTTCTTCACTTGGTCTCCCTCCGGCCAAGAGAAAGAGCTAGAAGAAAACCCAGCTCAGTTGAAGCAATATATGTTAAGCAAGCTCGGGAAGGTATCAGATGAAGTAAGGGCTGTTGTGGAAAACACTAATTTGGATGCTTTTATATCCTCTCCCTTGAGATATAGGCATCCTTGGGAGCTTCTTTGGGGAAATATTAGCAAAGGTACTGTATGTGTAGCTGGAGACGCGCTCCACCCCATGACCCCAGACATTGCACAAGGCGGCTGTGCTGCATTAGAGGACGGTGTTGTATTAGCAAGGTGTCTTGGTGAGGCCTTGTTGAAGAATCGGAGGCAAGAAATTAGAAAAGAAGGTGAACAAGGAAAAGAGGAATATAAAATGATTGAAAGAGGGTTGAATAAGTATGCCAGTGAAAGGAAATGGAGAAGTTTTGATCTTATTAGTACAGCTTATGTGGTTGGTTTTATACAGGAGGCTGATGGAAAAATAATGACTTTCTTGAGGAACAAGTTTTTCACTCCAATCCTGGCTGGGTTGCTGTTGAGGAAGGCTGATTATGATTGTGGTAAGCTCAGAAGCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

409

Amino Acids

45.44

Weight (kDa)

9.03

Isoelectric Point (pI)

35.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 3 - 324 4.6e-27 FAD binding domain
DAO PF01266 3 - 53 2.6e-06 FAD dependent oxidoreductase
Lycopene_cycl PF05834 3 - 194 7.2e-07 Lycopene cyclase protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 611
AccB1I GGYRCC 2 cut(s) 350, 611
AccII CGCG 1 cut(s) 872
AciI CCGC 4 cut(s) 48, 348, 503, 906
AclWI GGATC 1 cut(s) 563
AcoI YGGCCR 1 cut(s) 667
AcsI RAATTY 2 cut(s) 30, 231
AcuI CTGAAG 1 cut(s) 227
AfaI GTAC 4 cut(s) 587, 613, 850, 1090
AfiI CCNNNNNNNGG 1 cut(s) 1059
AgsI TTSAA 7 cut(s) 369, 499, 550, 706, 967, 1031, 1042
AjnI CCWGG 2 cut(s) 51, 1170
AjuI GAANNNNNNNTTGG 2 cut(s) 302, 334
Alw26I GTCTC 2 cut(s) 663, 861
AlwI GGATC 1 cut(s) 563
Ama87I CYCGRG 2 cut(s) 226, 728
AoxI GGCC 3 cut(s) 37, 667, 957
ApeKI GCWGC 3 cut(s) 190, 555, 914
ApoI RAATTY 2 cut(s) 30, 231
Asp718I GGTACC 1 cut(s) 611
AspLEI GCGC 1 cut(s) 874
AsuHPI GGTGA 3 cut(s) 188, 965, 1010
AvaI CYCGRG 2 cut(s) 226, 728
BanI GGYRCC 2 cut(s) 350, 611
BbvI GCAGC 3 cut(s) 202, 567, 901
BccI CCATC 3 cut(s) 437, 455, 1118
BceAI ACGGC 1 cut(s) 203
BciT130I CCWGG 2 cut(s) 53, 1172
BclI TGATCA 1 cut(s) 178
BcoDI GTCTC 2 cut(s) 663, 861
BfaI CTAG 2 cut(s) 345, 683
BglII AGATCT 2 cut(s) 521, 605
BisI GCNGC 6 cut(s) 191, 349, 503, 556, 907, 915
BlsI GCNGC 6 cut(s) 192, 350, 504, 557, 908, 916
Bme1390I CCNGG 2 cut(s) 53, 1172
BmeT110I CYCGRG 2 cut(s) 226, 728
BmiI GGNNCC 3 cut(s) 352, 427, 613
BmrFI CCNGG 2 cut(s) 53, 1172
BmsI GCATC 4 cut(s) 151, 421, 769, 820
BplI GAGNNNNNCTC 2 cut(s) 858, 890
BpmI CTGGAG 1 cut(s) 885
BpuEI CTTGAG 3 cut(s) 127, 820, 1165
BsaI GGTCTC 1 cut(s) 663
BsaJI CCNNGG 5 cut(s) 51, 52, 441, 589, 815
BsaXI ACNNNNNCTCC 2 cut(s) 643, 673
Bsc4I CCNNNNNNNGG 1 cut(s) 1059
Bse118I RCCGGY 1 cut(s) 505
Bse1I ACTGG 2 cut(s) 647, 1053
Bse3DI GCAATG 1 cut(s) 894
BseBI CCWGG 2 cut(s) 53, 1172
BseDI CCNNGG 5 cut(s) 51, 52, 441, 589, 815
BseGI GGATG 4 cut(s) 429, 461, 784, 811
BseLI CCNNNNNNNGG 1 cut(s) 1059
BseMI GCAATG 1 cut(s) 894
BseMII CTCAG 3 cut(s) 486, 534, 713
BseNI ACTGG 2 cut(s) 647, 1053
BseXI GCAGC 3 cut(s) 202, 567, 901
BseYI CCCAGC 4 cut(s) 67, 490, 694, 1175
Bsh1236I CGCG 1 cut(s) 872
BshFI GGCC 3 cut(s) 39, 669, 959
BshNI GGYRCC 2 cut(s) 350, 611
BsiHKCI CYCGRG 2 cut(s) 226, 728
BsiSI CCGG 2 cut(s) 506, 666
BslFI GGGAC 1 cut(s) 69
BslI CCNNNNNNNGG 1 cut(s) 1059
BsmAI GTCTC 2 cut(s) 663, 861
BsmBI CGTCTC 1 cut(s) 861
BsmFI GGGAC 1 cut(s) 69
BsnI GGCC 3 cut(s) 39, 669, 959
Bso31I GGTCTC 1 cut(s) 663
BsoBI CYCGRG 2 cut(s) 226, 728
Bsp143I GATC 5 cut(s) 178, 521, 568, 605, 1078
BspACI CCGC 4 cut(s) 48, 348, 503, 906
BspANI GGCC 3 cut(s) 39, 669, 959
BspCNI CTCAG 4 cut(s) 485, 535, 712, 1230
BspFNI CGCG 1 cut(s) 872
BspLI GGNNCC 3 cut(s) 352, 427, 613
BspPI GGATC 1 cut(s) 563
BspT107I GGYRCC 2 cut(s) 350, 611
BspTNI GGTCTC 1 cut(s) 663
BsrDI GCAATG 1 cut(s) 894
BsrFI RCCGGY 1 cut(s) 505
BsrI ACTGG 2 cut(s) 647, 1053
BssAI RCCGGY 1 cut(s) 505
BssECI CCNNGG 5 cut(s) 51, 52, 441, 589, 815
BssMI GATC 5 cut(s) 178, 521, 568, 605, 1078
BssT1I CCWWGG 3 cut(s) 441, 589, 815
Bst2UI CCWGG 2 cut(s) 53, 1172
Bst4CI ACNGT 4 cut(s) 205, 616, 853, 929
Bst6I CTCTTC 1 cut(s) 370
BstC8I GCNNGC 1 cut(s) 725
BstDEI CTNAG 4 cut(s) 472, 543, 699, 1217
BstF5I GGATG 4 cut(s) 429, 461, 784, 811
BstFNI CGCG 1 cut(s) 872
BstHHI GCGC 1 cut(s) 874
BstKTI GATC 5 cut(s) 181, 524, 571, 608, 1081
BstMAI GTCTC 2 cut(s) 663, 861
BstMBI GATC 5 cut(s) 178, 521, 568, 605, 1078
BstMWI GCNNNNNNNGC 4 cut(s) 78, 152, 161, 869
BstNI CCWGG 2 cut(s) 53, 1172
BstSCI CCNGG 2 cut(s) 51, 1170
BstUI CGCG 1 cut(s) 872
BstV1I GCAGC 3 cut(s) 202, 567, 901
BstX2I RGATCY 2 cut(s) 521, 605
BstXI CCANNNNNNTGG 1 cut(s) 448
BstYI RGATCY 2 cut(s) 521, 605
BsuRI GGCC 3 cut(s) 39, 669, 959
BtsCI GGATG 4 cut(s) 429, 461, 784, 811
BtsIMutI CAGTG 3 cut(s) 201, 480, 1060
Cac8I GCNNGC 1 cut(s) 725
CfoI GCGC 1 cut(s) 874
Cfr10I RCCGGY 1 cut(s) 505
CseI GACGC 1 cut(s) 878
Csp6I GTAC 4 cut(s) 586, 612, 849, 1089
CviAII CATG 4 cut(s) 287, 560, 574, 883
CviQI GTAC 4 cut(s) 586, 612, 849, 1089
DdeI CTNAG 4 cut(s) 472, 543, 699, 1217
DpnI GATC 5 cut(s) 180, 523, 570, 607, 1080
DpnII GATC 5 cut(s) 178, 521, 568, 605, 1078
EaeI YGGCCR 1 cut(s) 667
Eam1104I CTCTTC 1 cut(s) 370
EarI CTCTTC 1 cut(s) 370
Eco130I CCWWGG 3 cut(s) 441, 589, 815
Eco147I AGGCCT 1 cut(s) 959
Eco31I GGTCTC 1 cut(s) 663
Eco57I CTGAAG 1 cut(s) 227
Eco88I CYCGRG 2 cut(s) 226, 728
EcoRII CCWGG 2 cut(s) 51, 1170
EcoT14I CCWWGG 3 cut(s) 441, 589, 815
ErhI CCWWGG 3 cut(s) 441, 589, 815
Esp3I CGTCTC 1 cut(s) 861
FaeI CATG 4 cut(s) 290, 563, 577, 886
FaqI GGGAC 1 cut(s) 69
FatI CATG 4 cut(s) 286, 559, 573, 882
FbaI TGATCA 1 cut(s) 178
Fnu4HI GCNGC 6 cut(s) 191, 349, 503, 556, 907, 915
FokI GGATG 4 cut(s) 416, 468, 791, 798
Fsp4HI GCNGC 6 cut(s) 191, 349, 503, 556, 907, 915
FspBI CTAG 2 cut(s) 345, 683
GlaI GCGC 1 cut(s) 873
GluI GCNGC 6 cut(s) 191, 349, 503, 556, 907, 915
GsaI CCCAGC 4 cut(s) 71, 494, 698, 1179
GsuI CTGGAG 1 cut(s) 885
HaeIII GGCC 3 cut(s) 39, 669, 959
HapII CCGG 2 cut(s) 506, 666
HgaI GACGC 1 cut(s) 878
HhaI GCGC 1 cut(s) 874
Hin1II CATG 4 cut(s) 290, 563, 577, 886
Hin6I GCGC 1 cut(s) 872
HinP1I GCGC 1 cut(s) 872
HinfI GANTC 3 cut(s) 92, 389, 970
HpaII CCGG 2 cut(s) 506, 666
HphI GGTGA 3 cut(s) 188, 965, 1010
Hpy166II GTNNAC 4 cut(s) 338, 469, 640, 1001
Hpy188I TCNGA 5 cut(s) 131, 246, 742, 975, 1220
Hpy188III TCNNGA 5 cut(s) 226, 228, 550, 730, 1144
Hpy8I GTNNAC 4 cut(s) 338, 469, 640, 1001
HpyAV CCTTC 3 cut(s) 727, 989, 1186
HpyCH4III ACNGT 4 cut(s) 205, 616, 853, 929
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 7 cut(s) 125, 332, 412, 482, 583, 899, 917
HpyF10VI GCNNNNNNNGC 4 cut(s) 78, 152, 161, 869
HpyF3I CTNAG 4 cut(s) 472, 543, 699, 1217
HpySE526I ACGT 1 cut(s) 9
Hsp92II CATG 4 cut(s) 290, 563, 577, 886
HspAI GCGC 1 cut(s) 872
KpnI GGTACC 1 cut(s) 615
Ksp22I TGATCA 1 cut(s) 178
Kzo9I GATC 5 cut(s) 178, 521, 568, 605, 1078
LmnI GCTCC 4 cut(s) 23, 78, 820, 879
Lsp1109I GCAGC 3 cut(s) 202, 567, 901
LweI GCATC 4 cut(s) 151, 421, 769, 820
MaeI CTAG 2 cut(s) 345, 683
MaeII ACGT 1 cut(s) 9
MalI GATC 5 cut(s) 180, 523, 570, 607, 1080
MboI GATC 5 cut(s) 178, 521, 568, 605, 1078
MboII GAAGA 5 cut(s) 357, 531, 640, 698, 979
MflI RGATCY 2 cut(s) 521, 605
MluCI AATT 4 cut(s) 30, 231, 772, 984
MmeI TCCRAC 2 cut(s) 300, 433
MseI TTAA 5 cut(s) 252, 402, 578, 719, 1228
MslI CAYNNNNRTG 1 cut(s) 578
MspI CCGG 2 cut(s) 506, 666
MspR9I CCNGG 2 cut(s) 53, 1172
MvaI CCWGG 2 cut(s) 53, 1172
MvnI CGCG 1 cut(s) 872
MwoI GCNNNNNNNGC 4 cut(s) 78, 152, 161, 869
NdeII GATC 5 cut(s) 178, 521, 568, 605, 1078
NlaIII CATG 4 cut(s) 290, 563, 577, 886
NlaIV GGNNCC 3 cut(s) 352, 427, 613
PaeR7I CTCGAG 1 cut(s) 226
PasI CCCWGGG 1 cut(s) 52
PceI AGGCCT 1 cut(s) 959
PfeI GAWTC 3 cut(s) 92, 389, 970
PkrI GCNGC 6 cut(s) 192, 350, 504, 557, 908, 916
Psp6I CCWGG 2 cut(s) 51, 1170
PspFI CCCAGC 4 cut(s) 67, 490, 694, 1175
PspGI CCWGG 2 cut(s) 51, 1170
PspN4I GGNNCC 3 cut(s) 352, 427, 613
PsuI RGATCY 2 cut(s) 521, 605
RsaI GTAC 4 cut(s) 587, 613, 850, 1090
RsaNI GTAC 4 cut(s) 586, 612, 849, 1089
RseI CAYNNNNRTG 1 cut(s) 578
SaqAI TTAA 5 cut(s) 252, 402, 578, 719, 1228
SatI GCNGC 6 cut(s) 191, 349, 503, 556, 907, 915
Sau3AI GATC 5 cut(s) 178, 521, 568, 605, 1078
ScrFI CCNGG 2 cut(s) 53, 1172
SfaNI GCATC 4 cut(s) 151, 421, 769, 820
Sfr274I CTCGAG 1 cut(s) 226
SlaI CTCGAG 1 cut(s) 226
SmiMI CAYNNNNRTG 1 cut(s) 578
SmlI CTYRAG 4 cut(s) 106, 226, 799, 1144
SmoI CTYRAG 4 cut(s) 106, 226, 799, 1144
Sse9I AATT 4 cut(s) 30, 231, 772, 984
SseBI AGGCCT 1 cut(s) 959
SsiI CCGC 4 cut(s) 48, 348, 503, 906
SspI AATATT 1 cut(s) 838
SspMI CTAG 2 cut(s) 345, 683
StuI AGGCCT 1 cut(s) 959
StyD4I CCNGG 2 cut(s) 51, 1170
StyI CCWWGG 3 cut(s) 441, 589, 815
TaaI ACNGT 4 cut(s) 205, 616, 853, 929
TaiI ACGT 1 cut(s) 12
TaqI TCGA 2 cut(s) 227, 532
TasI AATT 4 cut(s) 30, 231, 772, 984
TatI WGTACW 1 cut(s) 1088
TauI GCSGC 3 cut(s) 351, 505, 909
TfiI GAWTC 3 cut(s) 92, 389, 970
Tru1I TTAA 5 cut(s) 252, 402, 578, 719, 1228
Tru9I TTAA 5 cut(s) 252, 402, 578, 719, 1228
TscAI CASTG 3 cut(s) 208, 480, 1060
TseI GCWGC 3 cut(s) 190, 555, 914
TspDTI ATGAA 2 cut(s) 303, 759
TspGWI ACGGA 1 cut(s) 438
TspRI CASTG 3 cut(s) 208, 480, 1060
XapI RAATTY 2 cut(s) 30, 231
XhoI CTCGAG 1 cut(s) 226
XspI CTAG 2 cut(s) 345, 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.