Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034228.1

Orthogroup ID

OG0000348

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 412

Gene Structure 412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034228.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 194 bp

gggcagggatagccggtttggccactgcagtggcgctgaagagagcaggaattgaagcccttgtgttggagagatccgaagggctgagagccacaggtgcagccttgactctataccccaacgcttggtctgctcttgatgcattgggaatttctcagaagctcgcaactcgttatgcccccacgctaaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009540 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009743 GO:0009756 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010182 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0023052 GO:0030104 GO:0031967 GO:0031975 GO:0032501 GO:0032787 GO:0042221 GO:0042440 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046148 GO:0046165 GO:0046394 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051716 GO:0052662 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

63

Amino Acids

6.44

Weight (kDa)

9.82

Isoelectric Point (pI)

34.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38540 AT5G05320
fragaria_vesca	FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica	MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica	Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis	pycom05g11780 pycom05g11790
rosa_chinensis	RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata	RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora	Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii	Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa	Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha	Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana	Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	125
AclWI	GGATC	1 cut(s)	68
AcoI	YGGCCR	1 cut(s)	20
AcsI	RAATTY	1 cut(s)	149
AcuI	CTGAAG	1 cut(s)	58
AfiI	CCNNNNNNNGG	2 cut(s)	66, 125
AgsI	TTSAA	1 cut(s)	55
AleI	CACNNNNGTG	1 cut(s)	28
AluBI	AGCT	1 cut(s)	162
AluI	AGCT	1 cut(s)	162
AlwI	GGATC	1 cut(s)	68
AoxI	GGCC	1 cut(s)	20
ApeKI	GCWGC	1 cut(s)	100
ApoI	RAATTY	1 cut(s)	149
AspLEI	GCGC	1 cut(s)	36
BalI	TGGCCA	1 cut(s)	22
BbvI	GCAGC	1 cut(s)	112
BfmI	CTRYAG	1 cut(s)	26
BfoI	RGCGCY	1 cut(s)	37
BglI	GCCNNNNNGGC	1 cut(s)	19
BisI	GCNGC	1 cut(s)	101
BlsI	GCNGC	1 cut(s)	102
BmsI	GCATC	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 125
Bse118I	RCCGGY	1 cut(s)	13
BseLI	CCNNNNNNNGG	2 cut(s)	66, 125
BseMII	CTCAG	2 cut(s)	76, 169
BseXI	GCAGC	1 cut(s)	112
BsgI	GTGCAG	1 cut(s)	119
BshFI	GGCC	1 cut(s)	22
BsiSI	CCGG	1 cut(s)	14
BslI	CCNNNNNNNGG	2 cut(s)	66, 125
BsnI	GGCC	1 cut(s)	22
Bsp143I	GATC	1 cut(s)	73
BspANI	GGCC	1 cut(s)	22
BspCNI	CTCAG	2 cut(s)	77, 168
BspMAI	CTGCAG	1 cut(s)	30
BspPI	GGATC	1 cut(s)	68
BsrFI	RCCGGY	1 cut(s)	13
BssAI	RCCGGY	1 cut(s)	13
BssMI	GATC	1 cut(s)	73
Bst6I	CTCTTC	1 cut(s)	34
BstC8I	GCNNGC	1 cut(s)	164
BstDEI	CTNAG	2 cut(s)	85, 155
BstH2I	RGCGCY	1 cut(s)	37
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	1 cut(s)	76
BstMBI	GATC	1 cut(s)	73
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 19, 97, 130, 139
BstSFI	CTRYAG	1 cut(s)	26
BstV1I	GCAGC	1 cut(s)	112
BstX2I	RGATCY	1 cut(s)	73
BstXI	CCANNNNNNTGG	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	73
BsuRI	GGCC	1 cut(s)	22
BtsI	GCAGTG	2 cut(s)	23, 35
BtsIMutI	CAGTG	2 cut(s)	23, 35
Cac8I	GCNNGC	1 cut(s)	164
CfoI	GCGC	1 cut(s)	36
Cfr10I	RCCGGY	1 cut(s)	13
CviJI	RGCY	7 cut(s)	13, 22, 58, 84, 91, 103, 162
CviKI_1	RGCY	7 cut(s)	13, 22, 58, 84, 91, 103, 162
DdeI	CTNAG	2 cut(s)	85, 155
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
EaeI	YGGCCR	1 cut(s)	20
Eam1104I	CTCTTC	1 cut(s)	34
EarI	CTCTTC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	58
EcoT22I	ATGCAT	1 cut(s)	144
FaiI	YATR	2 cut(s)	114, 176
Fnu4HI	GCNGC	1 cut(s)	101
Fsp4HI	GCNGC	1 cut(s)	101
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	1 cut(s)	101
HaeII	RGCGCY	1 cut(s)	37
HaeIII	GGCC	1 cut(s)	22
HapII	CCGG	1 cut(s)	14
HhaI	GCGC	1 cut(s)	36
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HinfI	GANTC	1 cut(s)	108
HpaII	CCGG	1 cut(s)	14
Hpy188I	TCNGA	2 cut(s)	78, 158
Hpy188III	TCNNGA	1 cut(s)	136
HpyAV	CCTTC	1 cut(s)	73
HpyCH4V	TGCA	3 cut(s)	28, 100, 142
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 19, 97, 130, 139
HpyF3I	CTNAG	2 cut(s)	85, 155
HspAI	GCGC	1 cut(s)	34
Kzo9I	GATC	1 cut(s)	73
LpnPI	CCDG	3 cut(s)	27, 32, 80
Lsp1109I	GCAGC	1 cut(s)	112
LweI	GCATC	1 cut(s)	129
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MboII	GAAGA	1 cut(s)	51
MflI	RGATCY	1 cut(s)	73
MlsI	TGGCCA	1 cut(s)	22
MluCI	AATT	2 cut(s)	50, 149
MluNI	TGGCCA	1 cut(s)	22
MlyI	GAGTC	1 cut(s)	102
MmeI	TCCRAC	1 cut(s)	47
Mox20I	TGGCCA	1 cut(s)	22
Mph1103I	ATGCAT	1 cut(s)	144
MscI	TGGCCA	1 cut(s)	22
MslI	CAYNNNNRTG	1 cut(s)	28
Msp20I	TGGCCA	1 cut(s)	22
MspI	CCGG	1 cut(s)	14
MwoI	GCNNNNNNNGC	5 cut(s)	10, 19, 97, 130, 139
NdeII	GATC	1 cut(s)	73
NsiI	ATGCAT	1 cut(s)	144
OliI	CACNNNNGTG	1 cut(s)	28
PflMI	CCANNNNNTGG	1 cut(s)	125
PkrI	GCNGC	1 cut(s)	102
PleI	GAGTC	1 cut(s)	102
PpsI	GAGTC	1 cut(s)	102
PstI	CTGCAG	1 cut(s)	30
PsuI	RGATCY	1 cut(s)	73
RseI	CAYNNNNRTG	1 cut(s)	28
SatI	GCNGC	1 cut(s)	101
Sau3AI	GATC	1 cut(s)	73
SchI	GAGTC	1 cut(s)	102
SetI	ASST	2 cut(s)	99, 164
SfaNI	GCATC	1 cut(s)	129
SfcI	CTRYAG	1 cut(s)	26
SmiMI	CAYNNNNRTG	1 cut(s)	28
Sse9I	AATT	2 cut(s)	50, 149
TasI	AATT	2 cut(s)	50, 149
TscAI	CASTG	2 cut(s)	30, 35
TseI	GCWGC	1 cut(s)	100
TspRI	CASTG	2 cut(s)	30, 35
Van91I	CCANNNNNTGG	1 cut(s)	125
XapI	RAATTY	1 cut(s)	149
Zsp2I	ATGCAT	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.