Rmu_sc0006193.1_g000001

FAD binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006193.1
OG0000348
Physical Location & Seq
Reverse (-)
2043 .. 2415
373 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006193.1_g000001.1.cds

Sequence Viewer

Length: 246 bp
atgatgatggagatggcagaagatacaagagaaaatattgtgattgtgggtggtgggatttttagccttgccactgctcttgctcttcacaggaagggcataagaagcttggtcctagaaagatcagagagtttgcgagcaacgggagtaggtatcattattccttctaatggatggcgtgcacttgatcaacatggtgttgcctcctatctaattagacaaactgctaatcctatactatcgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

81

Amino Acids

8.78

Weight (kDa)

8.38

Isoelectric Point (pI)

33.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 170
AluBI AGCT 1 cut(s) 108
AluI AGCT 1 cut(s) 108
Alw21I GWGCWC 1 cut(s) 184
Alw44I GTGCAC 1 cut(s) 180
ApaLI GTGCAC 1 cut(s) 180
AspS9I GGNCC 1 cut(s) 112
AvaII GGWCC 1 cut(s) 112
BaeGI GKGCMC 1 cut(s) 184
Bbv12I GWGCWC 1 cut(s) 184
BccI CCATC 2 cut(s) 7, 168
BclI TGATCA 1 cut(s) 187
BfaI CTAG 1 cut(s) 116
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 112
Bsc4I CCNNNNNNNGG 1 cut(s) 170
BseGI GGATG 1 cut(s) 179
BseLI CCNNNNNNNGG 1 cut(s) 170
BseSI GKGCMC 1 cut(s) 184
BsiHKAI GWGCWC 1 cut(s) 184
BslI CCNNNNNNNGG 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 184
Bsp143I GATC 2 cut(s) 122, 187
BspQI GCTCTTC 1 cut(s) 90
BssMI GATC 2 cut(s) 122, 187
Bst6I CTCTTC 1 cut(s) 90
BstC8I GCNNGC 2 cut(s) 138, 180
BstF5I GGATG 1 cut(s) 179
BstKTI GATC 2 cut(s) 125, 190
BstMBI GATC 2 cut(s) 122, 187
BstMWI GCNNNNNNNGC 1 cut(s) 105
BstSLI GKGCMC 1 cut(s) 184
BtsCI GGATG 1 cut(s) 179
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 1 cut(s) 72
Cac8I GCNNGC 2 cut(s) 138, 180
Cfr13I GGNCC 1 cut(s) 112
CspCI CAANNNNNGTGG 2 cut(s) 61, 96
CviAII CATG 1 cut(s) 194
CviJI RGCY 2 cut(s) 66, 108
CviKI_1 RGCY 2 cut(s) 66, 108
DpnI GATC 2 cut(s) 124, 189
DpnII GATC 2 cut(s) 122, 187
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Eco47I GGWCC 1 cut(s) 112
FaeI CATG 1 cut(s) 197
FaiI YATR 3 cut(s) 101, 195, 236
FatI CATG 1 cut(s) 193
FbaI TGATCA 1 cut(s) 187
FokI GGATG 1 cut(s) 186
FspBI CTAG 1 cut(s) 116
Hin1II CATG 1 cut(s) 197
HindIII AAGCTT 1 cut(s) 106
Hpy166II GTNNAC 1 cut(s) 182
Hpy188I TCNGA 1 cut(s) 127
Hpy8I GTNNAC 1 cut(s) 182
HpyAV CCTTC 2 cut(s) 88, 174
HpyCH4V TGCA 1 cut(s) 182
HpyF10VI GCNNNNNNNGC 1 cut(s) 105
Hsp92II CATG 1 cut(s) 197
Ksp22I TGATCA 1 cut(s) 187
Kzo9I GATC 2 cut(s) 122, 187
LguI GCTCTTC 1 cut(s) 90
LpnPI CCDG 1 cut(s) 76
MaeI CTAG 1 cut(s) 116
MalI GATC 2 cut(s) 124, 189
MboI GATC 2 cut(s) 122, 187
MboII GAAGA 2 cut(s) 32, 77
MhlI GDGCHC 1 cut(s) 184
MluCI AATT 1 cut(s) 213
MnlI CCTC 1 cut(s) 214
MwoI GCNNNNNNNGC 1 cut(s) 105
NdeII GATC 2 cut(s) 122, 187
NlaIII CATG 1 cut(s) 197
PciSI GCTCTTC 1 cut(s) 90
PspPI GGNCC 1 cut(s) 112
SapI GCTCTTC 1 cut(s) 90
Sau3AI GATC 2 cut(s) 122, 187
Sau96I GGNCC 1 cut(s) 112
SduI GDGCHC 1 cut(s) 184
SetI ASST 2 cut(s) 110, 154
SinI GGWCC 1 cut(s) 112
Sse9I AATT 1 cut(s) 213
SspI AATATT 1 cut(s) 37
SspMI CTAG 1 cut(s) 116
TasI AATT 1 cut(s) 213
TscAI CASTG 1 cut(s) 79
TspRI CASTG 1 cut(s) 79
VneI GTGCAC 1 cut(s) 180
VpaK11BI GGWCC 1 cut(s) 112
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.