FvH4_4g09610

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000348
Physical Location & Seq
Forward (+)
11474803 .. 11477078
2276 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g09610.t1

Sequence Viewer

Length: 381 bp
ATGGAAGTAGTACAAGACGTTGTGATTGTGGGAGCTGGAATCTCTGGCCTCACAACCTCCTTGGGACTTCAACCAGACTCGCTCTCTTATACTCTTTGCTTTTTGGTGTTTCCAGTCACGAGCTTTCATCAGTTGCGCCATGGAAGGTTGGGTATTAGGAGCTTAGTGCTGGAGTTGTCTGATAGCTTGAGGGCAACAGGGTTTGCATTCACAACTTGGACTAATGATGAACTCCCTAGTGGCACCATCAGGTTCTCTTCAAAGGTTGTTTCGATTGAGGAATCAAGCTACTTAAAGCTGGTGCATCTTGCTAACGGAACCATCCTCAAAGCCAAGGTTTGGAGTCACAAAGCTTCCAAGCACTGGAAAGTCTTGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

127

Amino Acids

13.86

Weight (kDa)

9.25

Isoelectric Point (pI)

29.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 242
AccB7I CCANNNNNTGG 2 cut(s) 339, 363
AfaI GTAC 1 cut(s) 12
AfiI CCNNNNNNNGG 2 cut(s) 339, 363
AgsI TTSAA 2 cut(s) 71, 261
AluBI AGCT 7 cut(s) 35, 123, 162, 186, 288, 298, 353
AluI AGCT 7 cut(s) 35, 123, 162, 186, 288, 298, 353
AoxI GGCC 1 cut(s) 46
AspLEI GCGC 1 cut(s) 138
BanI GGYRCC 1 cut(s) 242
BauI CACGAG 1 cut(s) 118
BccI CCATC 2 cut(s) 254, 329
BfaI CTAG 1 cut(s) 237
BmiI GGNNCC 2 cut(s) 244, 319
BmsI GCATC 1 cut(s) 313
BpmI CTGGAG 1 cut(s) 191
BpuEI CTTGAG 1 cut(s) 208
BsaJI CCNNGG 3 cut(s) 60, 139, 333
Bsc4I CCNNNNNNNGG 2 cut(s) 339, 363
Bse1I ACTGG 2 cut(s) 113, 368
BseDI CCNNGG 3 cut(s) 60, 139, 333
BseGI GGATG 1 cut(s) 321
BseLI CCNNNNNNNGG 2 cut(s) 339, 363
BseNI ACTGG 2 cut(s) 113, 368
BshFI GGCC 1 cut(s) 48
BshNI GGYRCC 1 cut(s) 242
BslFI GGGAC 1 cut(s) 78
BslI CCNNNNNNNGG 2 cut(s) 339, 363
BsmFI GGGAC 1 cut(s) 78
BsmI GAATGC 1 cut(s) 206
BsnI GGCC 1 cut(s) 48
Bsp19I CCATGG 1 cut(s) 139
BspANI GGCC 1 cut(s) 48
BspLI GGNNCC 2 cut(s) 244, 319
BspT107I GGYRCC 1 cut(s) 242
BsrI ACTGG 2 cut(s) 113, 368
BssECI CCNNGG 3 cut(s) 60, 139, 333
BssSI CACGAG 1 cut(s) 118
BssT1I CCWWGG 3 cut(s) 60, 139, 333
Bst2BI CACGAG 1 cut(s) 118
Bst6I CTCTTC 1 cut(s) 262
BstDEI CTNAG 1 cut(s) 163
BstDSI CCRYGG 1 cut(s) 139
BstF5I GGATG 1 cut(s) 321
BstHHI GCGC 1 cut(s) 138
BsuRI GGCC 1 cut(s) 48
BtgI CCRYGG 1 cut(s) 139
BtsCI GGATG 1 cut(s) 321
BtsIMutI CAGTG 1 cut(s) 361
CfoI GCGC 1 cut(s) 138
Csp6I GTAC 1 cut(s) 11
CviAII CATG 1 cut(s) 140
CviJI RGCY 9 cut(s) 35, 48, 123, 162, 186, 288, 298, 332, 353
CviKI_1 RGCY 9 cut(s) 35, 48, 123, 162, 186, 288, 298, 332, 353
CviQI GTAC 1 cut(s) 11
DdeI CTNAG 1 cut(s) 163
Eam1104I CTCTTC 1 cut(s) 262
EarI CTCTTC 1 cut(s) 262
Eco130I CCWWGG 3 cut(s) 60, 139, 333
EcoT14I CCWWGG 3 cut(s) 60, 139, 333
ErhI CCWWGG 3 cut(s) 60, 139, 333
FaeI CATG 1 cut(s) 143
FaiI YATR 2 cut(s) 90, 141
FaqI GGGAC 1 cut(s) 78
FatI CATG 1 cut(s) 139
FokI GGATG 1 cut(s) 308
FspBI CTAG 1 cut(s) 237
GlaI GCGC 1 cut(s) 137
GsuI CTGGAG 1 cut(s) 191
HaeIII GGCC 1 cut(s) 48
HhaI GCGC 1 cut(s) 138
Hin1II CATG 1 cut(s) 143
Hin6I GCGC 1 cut(s) 136
HinP1I GCGC 1 cut(s) 136
HindIII AAGCTT 1 cut(s) 351
HinfI GANTC 4 cut(s) 39, 77, 281, 343
Hpy188I TCNGA 1 cut(s) 181
Hpy188III TCNNGA 1 cut(s) 118
HpyAV CCTTC 1 cut(s) 138
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 2 cut(s) 206, 304
HpyF3I CTNAG 1 cut(s) 163
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 1 cut(s) 143
HspAI GCGC 1 cut(s) 136
LmnI GCTCC 2 cut(s) 32, 159
LpnPI CCDG 9 cut(s) 21, 30, 87, 126, 155, 183, 235, 284, 349
LweI GCATC 1 cut(s) 313
MaeI CTAG 1 cut(s) 237
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 2 cut(s) 115, 344
MboII GAAGA 1 cut(s) 249
MlyI GAGTC 2 cut(s) 71, 352
MnlI CCTC 5 cut(s) 59, 67, 183, 271, 335
MseI TTAA 1 cut(s) 293
Mva1269I GAATGC 1 cut(s) 206
NcoI CCATGG 1 cut(s) 139
NlaIII CATG 1 cut(s) 143
NlaIV GGNNCC 2 cut(s) 244, 319
NmuCI GTSAC 2 cut(s) 115, 344
PctI GAATGC 1 cut(s) 206
PfeI GAWTC 2 cut(s) 39, 281
PflMI CCANNNNNTGG 2 cut(s) 339, 363
PleI GAGTC 2 cut(s) 71, 351
PpsI GAGTC 2 cut(s) 71, 351
PspN4I GGNNCC 2 cut(s) 244, 319
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
SaqAI TTAA 1 cut(s) 293
SchI GAGTC 2 cut(s) 71, 352
SfaNI GCATC 1 cut(s) 313
SmlI CTYRAG 1 cut(s) 187
SmoI CTYRAG 1 cut(s) 187
SspMI CTAG 1 cut(s) 237
StyI CCWWGG 3 cut(s) 60, 139, 333
TaiI ACGT 1 cut(s) 21
TaqI TCGA 1 cut(s) 272
TatI WGTACW 1 cut(s) 10
TfiI GAWTC 2 cut(s) 39, 281
Tru1I TTAA 1 cut(s) 293
Tru9I TTAA 1 cut(s) 293
TscAI CASTG 1 cut(s) 368
TseFI GTSAC 2 cut(s) 115, 344
Tsp45I GTSAC 2 cut(s) 115, 344
TspDTI ATGAA 2 cut(s) 116, 243
TspGWI ACGGA 1 cut(s) 330
TspRI CASTG 1 cut(s) 368
Van91I CCANNNNNTGG 2 cut(s) 339, 363
XspI CTAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.