Rmu_sc0002777.1_g000011

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002777.1
OG0000348
Physical Location & Seq
Reverse (-)
56198 .. 59158
2961 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002777.1_g000011.1.cds

Sequence Viewer

Length: 942 bp
atgatatcgtgtgaacactacatgatttgcagaggagaccaagaagttcgatgtgtgaaaaggaatttgttgttggaagcccttgcaagtgaactccctagcggtacaattaggttctcatcgaagtttgtttccattgaggaatcagggtaccttaagctcgtgcaccttgcagatggaaccatcctcaaagccaaggtacacaatcatggttttgaacccattaccatgcaacactttgggattggtgttagatctggtgctgctcactgtgatgataaaagtgtttattggttctttgatgataaaagtgtttattggttctttggctggtctccctccagccaagagaaagagctagagaagaaccctgctcagttgaaaaaatattgtttggctccaaaaccagctggtgtgcaaacagtctcttttgagcgtgtggagagcaccaacctcgtcaaaaggttcttttcttgccttccgggaaaggactttcgccttacggataaggactttggttgtggtttcttcgcgttcaccaaatcgatacttaggcgttacccttgcttcgctggaagtaacagtggcggttgtgctggcagtaggctcctggggagactgggactggaagtacggtcgccggtgagatataggcacccttgggaattgctttggggaaatattagcaaaggtggtgtatgtgttgctggagacgcactctaccccatgaccccagacattggccaaggtggctgtgctgcattagaagacggtgttgtattagcaagatgtcttggtgaggctttgttgaagaaccggaggcaagaaattagagataaagatgaagaacaaaaagaggaatgtaagaggattgaaatggggttgatgaattatgccagtgagaggaaatggaaaagcattgatctgattattacatcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

313

Amino Acids

35.19

Weight (kDa)

8.61

Isoelectric Point (pI)

48.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 150
AccB1I GGYRCC 2 cut(s) 150, 654
AccB7I CCANNNNNTGG 1 cut(s) 740
AccII CGCG 1 cut(s) 533
AciI CCGC 2 cut(s) 102, 588
AcoI YGGCCR 1 cut(s) 742
AcsI RAATTY 1 cut(s) 64
AfaI GTAC 4 cut(s) 106, 152, 201, 633
AfiI CCNNNNNNNGG 2 cut(s) 740, 903
AflII CTTAAG 1 cut(s) 155
AgsI TTSAA 4 cut(s) 218, 382, 811, 875
AjnI CCWGG 1 cut(s) 609
AjuI GAANNNNNNNTTGG 2 cut(s) 56, 88
AluBI AGCT 3 cut(s) 160, 358, 410
AluI AGCT 3 cut(s) 160, 358, 410
Alw21I GWGCWC 2 cut(s) 168, 449
Alw26I GTCTC 5 cut(s) 30, 339, 430, 610, 705
Alw44I GTGCAC 1 cut(s) 164
AoxI GGCC 1 cut(s) 742
ApaLI GTGCAC 1 cut(s) 164
ApeKI GCWGC 2 cut(s) 263, 758
ApoI RAATTY 1 cut(s) 64
Asp718I GGTACC 1 cut(s) 150
AsuC2I CCSGG 1 cut(s) 483
AsuHPI GGTGA 3 cut(s) 529, 655, 809
BaeGI GKGCMC 1 cut(s) 168
BalI TGGCCA 1 cut(s) 744
BanI GGYRCC 2 cut(s) 150, 654
BauI CACGAG 1 cut(s) 161
BbsI GAAGAC 1 cut(s) 774
Bbv12I GWGCWC 2 cut(s) 168, 449
BbvI GCAGC 2 cut(s) 250, 745
BccI CCATC 2 cut(s) 170, 191
BcgI CGANNNNNNTGC 2 cut(s) 436, 470
BciT130I CCWGG 1 cut(s) 611
BcnI CCSGG 1 cut(s) 483
BcoDI GTCTC 5 cut(s) 30, 339, 430, 610, 705
BfaI CTAG 2 cut(s) 99, 359
BfrI CTTAAG 1 cut(s) 155
BglI GCCNNNNNGGC 1 cut(s) 750
BglII AGATCT 1 cut(s) 254
BisI GCNGC 2 cut(s) 264, 759
BlsI GCNGC 2 cut(s) 265, 760
Bme1390I CCNGG 2 cut(s) 483, 611
BmiI GGNNCC 5 cut(s) 152, 181, 399, 608, 656
BmrFI CCNGG 2 cut(s) 483, 611
BmrI ACTGGG 1 cut(s) 629
BmuI ACTGGG 1 cut(s) 629
BpiI GAAGAC 1 cut(s) 774
BplI GAGNNNNNCTC 2 cut(s) 702, 734
BpmI CTGGAG 2 cut(s) 325, 729
BpuMI CCSGG 1 cut(s) 483
Bsa29I ATCGAT 1 cut(s) 545
BsaI GGTCTC 2 cut(s) 30, 339
BsaJI CCNNGG 4 cut(s) 195, 610, 659, 745
BsaWI WCCGGW 1 cut(s) 816
Bsc4I CCNNNNNNNGG 2 cut(s) 740, 903
Bse118I RCCGGY 1 cut(s) 640
Bse1I ACTGG 3 cut(s) 624, 630, 897
BseBI CCWGG 1 cut(s) 611
BseCI ATCGAT 1 cut(s) 545
BseDI CCNNGG 4 cut(s) 195, 610, 659, 745
BseGI GGATG 1 cut(s) 183
BseLI CCNNNNNNNGG 2 cut(s) 740, 903
BseMII CTCAG 1 cut(s) 389
BseNI ACTGG 3 cut(s) 624, 630, 897
BseRI GAGGAG 1 cut(s) 48
BseSI GKGCMC 1 cut(s) 168
BseXI GCAGC 2 cut(s) 250, 745
Bsh1236I CGCG 1 cut(s) 533
Bsh1285I CGRYCG 1 cut(s) 638
BshFI GGCC 1 cut(s) 744
BshNI GGYRCC 2 cut(s) 150, 654
BshVI ATCGAT 1 cut(s) 545
BsiEI CGRYCG 1 cut(s) 638
BsiHKAI GWGCWC 2 cut(s) 168, 449
BsiSI CCGG 3 cut(s) 482, 641, 817
BslFI GGGAC 1 cut(s) 636
BslI CCNNNNNNNGG 2 cut(s) 740, 903
BsmAI GTCTC 5 cut(s) 30, 339, 430, 610, 705
BsmBI CGTCTC 1 cut(s) 705
BsmFI GGGAC 1 cut(s) 636
BsnI GGCC 1 cut(s) 744
Bso31I GGTCTC 2 cut(s) 30, 339
Bsp1286I GDGCHC 2 cut(s) 168, 449
Bsp143I GATC 2 cut(s) 254, 922
BspACI CCGC 2 cut(s) 102, 588
BspANI GGCC 1 cut(s) 744
BspCNI CTCAG 1 cut(s) 388
BspDI ATCGAT 1 cut(s) 545
BspFNI CGCG 1 cut(s) 533
BspLI GGNNCC 5 cut(s) 152, 181, 399, 608, 656
BspT107I GGYRCC 2 cut(s) 150, 654
BspTI CTTAAG 1 cut(s) 155
BspTNI GGTCTC 2 cut(s) 30, 339
BsrFI RCCGGY 1 cut(s) 640
BsrI ACTGG 3 cut(s) 624, 630, 897
BssAI RCCGGY 1 cut(s) 640
BssECI CCNNGG 4 cut(s) 195, 610, 659, 745
BssMI GATC 2 cut(s) 254, 922
BssSI CACGAG 1 cut(s) 161
BssT1I CCWWGG 3 cut(s) 195, 659, 745
Bst2BI CACGAG 1 cut(s) 161
Bst2UI CCWGG 1 cut(s) 611
Bst4CI ACNGT 5 cut(s) 272, 424, 584, 636, 773
BstAFI CTTAAG 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 598
BstDEI CTNAG 2 cut(s) 375, 551
BstF5I GGATG 1 cut(s) 183
BstFNI CGCG 1 cut(s) 533
BstKTI GATC 2 cut(s) 257, 925
BstMAI GTCTC 5 cut(s) 30, 339, 430, 610, 705
BstMBI GATC 2 cut(s) 254, 922
BstMCI CGRYCG 1 cut(s) 638
BstMWI GCNNNNNNNGC 2 cut(s) 713, 750
BstNI CCWGG 1 cut(s) 611
BstSCI CCNGG 2 cut(s) 481, 609
BstSLI GKGCMC 1 cut(s) 168
BstUI CGCG 1 cut(s) 533
BstV1I GCAGC 2 cut(s) 250, 745
BstV2I GAAGAC 1 cut(s) 774
BstX2I RGATCY 1 cut(s) 254
BstYI RGATCY 1 cut(s) 254
Bsu15I ATCGAT 1 cut(s) 545
BsuRI GGCC 1 cut(s) 744
BsuTUI ATCGAT 1 cut(s) 545
BtsCI GGATG 1 cut(s) 183
BtsIMutI CAGTG 3 cut(s) 268, 589, 904
Cac8I GCNNGC 1 cut(s) 598
Cfr10I RCCGGY 1 cut(s) 640
ClaI ATCGAT 1 cut(s) 545
CseI GACGC 1 cut(s) 722
Csp6I GTAC 4 cut(s) 105, 151, 200, 632
CviAII CATG 4 cut(s) 22, 209, 229, 727
CviQI GTAC 4 cut(s) 105, 151, 200, 632
DdeI CTNAG 2 cut(s) 375, 551
DpnI GATC 2 cut(s) 256, 924
DpnII GATC 2 cut(s) 254, 922
EaeI YGGCCR 1 cut(s) 742
Eco130I CCWWGG 3 cut(s) 195, 659, 745
Eco31I GGTCTC 2 cut(s) 30, 339
Eco32I GATATC 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 609
EcoRV GATATC 1 cut(s) 6
EcoT14I CCWWGG 3 cut(s) 195, 659, 745
ErhI CCWWGG 3 cut(s) 195, 659, 745
Esp3I CGTCTC 1 cut(s) 705
FaeI CATG 4 cut(s) 25, 212, 232, 730
FaiI YATR 7 cut(s) 23, 210, 230, 651, 700, 728, 894
FaqI GGGAC 1 cut(s) 636
FatI CATG 4 cut(s) 21, 208, 228, 726
Fnu4HI GCNGC 2 cut(s) 264, 759
FokI GGATG 1 cut(s) 170
Fsp4HI GCNGC 2 cut(s) 264, 759
FspBI CTAG 2 cut(s) 99, 359
GluI GCNGC 2 cut(s) 264, 759
GsuI CTGGAG 2 cut(s) 325, 729
HaeIII GGCC 1 cut(s) 744
HapII CCGG 3 cut(s) 482, 641, 817
HgaI GACGC 1 cut(s) 722
Hin1II CATG 4 cut(s) 25, 212, 232, 730
HinfI GANTC 1 cut(s) 143
HpaII CCGG 3 cut(s) 482, 641, 817
HphI GGTGA 3 cut(s) 529, 655, 809
Hpy166II GTNNAC 5 cut(s) 14, 92, 166, 202, 537
Hpy188I TCNGA 1 cut(s) 927
Hpy8I GTNNAC 5 cut(s) 14, 92, 166, 202, 537
HpyAV CCTTC 1 cut(s) 488
HpyCH4III ACNGT 5 cut(s) 272, 424, 584, 636, 773
HpyCH4V TGCA 7 cut(s) 30, 86, 166, 173, 232, 418, 761
HpyF10VI GCNNNNNNNGC 2 cut(s) 713, 750
HpyF3I CTNAG 2 cut(s) 375, 551
Hsp92II CATG 4 cut(s) 25, 212, 232, 730
KpnI GGTACC 1 cut(s) 154
Kzo9I GATC 2 cut(s) 254, 922
LmnI GCTCC 2 cut(s) 403, 612
Lsp1109I GCAGC 2 cut(s) 250, 745
MaeI CTAG 2 cut(s) 99, 359
MaeIII GTNAC 2 cut(s) 557, 578
MalI GATC 2 cut(s) 256, 924
MboI GATC 2 cut(s) 254, 922
MboII GAAGA 5 cut(s) 376, 520, 779, 823, 857
MflI RGATCY 1 cut(s) 254
MhlI GDGCHC 2 cut(s) 168, 449
MlsI TGGCCA 1 cut(s) 744
MluCI AATT 5 cut(s) 64, 108, 665, 828, 889
MluNI TGGCCA 1 cut(s) 744
MmeI TCCRAC 1 cut(s) 54
Mox20I TGGCCA 1 cut(s) 744
MscI TGGCCA 1 cut(s) 744
MseI TTAA 2 cut(s) 156, 940
MslI CAYNNNNRTG 3 cut(s) 207, 227, 273
Msp20I TGGCCA 1 cut(s) 744
MspA1I CMGCKG 1 cut(s) 410
MspCI CTTAAG 1 cut(s) 155
MspI CCGG 3 cut(s) 482, 641, 817
MspR9I CCNGG 2 cut(s) 483, 611
MvaI CCWGG 1 cut(s) 611
MvnI CGCG 1 cut(s) 533
MwoI GCNNNNNNNGC 2 cut(s) 713, 750
NciI CCSGG 1 cut(s) 483
NdeII GATC 2 cut(s) 254, 922
NlaIII CATG 4 cut(s) 25, 212, 232, 730
NlaIV GGNNCC 5 cut(s) 152, 181, 399, 608, 656
PfeI GAWTC 1 cut(s) 143
PflMI CCANNNNNTGG 1 cut(s) 740
PfoI TCCNGGA 1 cut(s) 481
PkrI GCNGC 2 cut(s) 265, 760
Psp6I CCWGG 1 cut(s) 609
PspGI CCWGG 1 cut(s) 609
PspN4I GGNNCC 5 cut(s) 152, 181, 399, 608, 656
PsuI RGATCY 1 cut(s) 254
PvuII CAGCTG 1 cut(s) 410
RsaI GTAC 4 cut(s) 106, 152, 201, 633
RsaNI GTAC 4 cut(s) 105, 151, 200, 632
RseI CAYNNNNRTG 3 cut(s) 207, 227, 273
SaqAI TTAA 2 cut(s) 156, 940
SatI GCNGC 2 cut(s) 264, 759
Sau3AI GATC 2 cut(s) 254, 922
ScrFI CCNGG 2 cut(s) 483, 611
SduI GDGCHC 2 cut(s) 168, 449
SgrAI CRCCGGYG 1 cut(s) 640
SmiMI CAYNNNNRTG 3 cut(s) 207, 227, 273
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 5 cut(s) 64, 108, 665, 828, 889
SsiI CCGC 2 cut(s) 102, 588
SspI AATATT 2 cut(s) 389, 682
SspMI CTAG 2 cut(s) 99, 359
StyD4I CCNGG 2 cut(s) 481, 609
StyI CCWWGG 3 cut(s) 195, 659, 745
TaaI ACNGT 5 cut(s) 272, 424, 584, 636, 773
TaqI TCGA 3 cut(s) 49, 122, 545
TasI AATT 5 cut(s) 64, 108, 665, 828, 889
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 2 cut(s) 156, 940
Tru9I TTAA 2 cut(s) 156, 940
TscAI CASTG 3 cut(s) 275, 589, 904
TseI GCWGC 2 cut(s) 263, 758
TspDTI ATGAA 2 cut(s) 858, 902
TspGWI ACGGA 1 cut(s) 518
TspRI CASTG 3 cut(s) 275, 589, 904
Van91I CCANNNNNTGG 1 cut(s) 740
Vha464I CTTAAG 1 cut(s) 155
VneI GTGCAC 1 cut(s) 164
XapI RAATTY 1 cut(s) 64
XspI CTAG 2 cut(s) 99, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.