FvH4_2g15511

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000348
Physical Location & Seq
Reverse (-)
13640022 .. 13656618
16597 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g15511.t3

Sequence Viewer

Length: 813 bp
ATGGAAGTAGTAGAAGAAGTTGTGATTGTTGGAGCTGGAATTGCTGGCCTTACAACTTCCTTAGGACTTCACAGGCTGGGAATTCGGAGCTTAGTGTTGGAAACATCGGAGAGTTTGAGGGCGACTGGATTAGCATTCACAACCTGGACAAATGCCTGGAAGGCCTTGGATGCTGTTGGTATTGGGGAATCTCTTCGGAGACAAAACGAGGCACTTCATGGGATTGTTACTTACTCAACAGTTTCTGGGCTTCCATTGTTTGAGATGTCACTCAAGGACAAGGGTAAACAAGGAGACCATGAAGTTCGTTGCGTGAACAGGAAGTTGTTGTTGGAATCCCTTGCAAATGAACTTCCTAGTGGCACAATCAGGTTCTCCTCTAAGGTGATTTCCATTGAGGAATCAGGCTACTTTAAATTGCTGCATCTTGCTGATGGAACTATCCTGAGAGCCAAGGTCTTGGTTGGGTGTGATGGAGTGAATTCTGTGGTGGCAAAATGGCTCGGTTTCAAGCAGCCAGCCTTTACAGGGAGACACGCTATAAGAGGTCGTGCCAACTTCAAGAACAGTCATGGGTTTGATCCCGTGTTCATGCAGTTCTTTGGCAATGGTGTTAGATCTGGTGCCATCCCTTGTGATGATAAAACTGTTTTTTGGTACTTCACTTGGACTCCAACCAACCAAGAGAAAGAGCTAGAGAAGAACCCAGCTGAGATGAAGCAATTTATGTTGAGCAAGCTGGGAAATATACCTGATGATATAAAGGATGTGATTAAAACACTGAATTGGATGCTTTTGTTTCCTCTCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

271

Amino Acids

29.88

Weight (kDa)

8.71

Isoelectric Point (pI)

23.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 6 - 329 5.7e-23 FAD binding domain
Lycopene_cycl PF05834 6 - 163 1.2e-06 Lycopene cyclase protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 623
AclWI GGATC 1 cut(s) 575
AcsI RAATTY 2 cut(s) 81, 481
AfaI GTAC 1 cut(s) 659
AfiI CCNNNNNNNGG 1 cut(s) 528
AgsI TTSAA 2 cut(s) 511, 562
AjnI CCWGG 2 cut(s) 143, 155
AjuI GAANNNNNNNTTGG 2 cut(s) 314, 346
AluBI AGCT 5 cut(s) 35, 90, 694, 710, 739
AluI AGCT 5 cut(s) 35, 90, 694, 710, 739
Alw26I GTCTC 3 cut(s) 193, 288, 526
AlwI GGATC 1 cut(s) 575
AlwNI CAGNNNCTG 1 cut(s) 245
AoxI GGCC 2 cut(s) 46, 162
ApeKI GCWGC 2 cut(s) 421, 514
ApoI RAATTY 2 cut(s) 81, 481
Asp700I GAANNNNTTC 1 cut(s) 192
AsuHPI GGTGA 1 cut(s) 397
AxyI CCTNAGG 1 cut(s) 61
BanI GGYRCC 1 cut(s) 623
BbvI GCAGC 2 cut(s) 408, 526
BccI CCATC 3 cut(s) 428, 467, 635
BciT130I CCWGG 2 cut(s) 145, 157
BcoDI GTCTC 3 cut(s) 193, 288, 526
BfaI CTAG 2 cut(s) 357, 695
BglI GCCNNNNNGGC 1 cut(s) 161
BglII AGATCT 1 cut(s) 617
BisI GCNGC 2 cut(s) 422, 515
BlsI GCNGC 2 cut(s) 423, 516
Bme1390I CCNGG 2 cut(s) 145, 157
BmiI GGNNCC 1 cut(s) 625
BmrFI CCNGG 2 cut(s) 145, 157
BmsI GCATC 3 cut(s) 160, 433, 780
BpuEI CTTGAG 1 cut(s) 257
BsaI GGTCTC 1 cut(s) 288
BsaJI CCNNGG 2 cut(s) 165, 453
BsaXI ACNNNNNCTCC 2 cut(s) 655, 685
Bsc4I CCNNNNNNNGG 1 cut(s) 528
Bse1I ACTGG 1 cut(s) 130
Bse21I CCTNAGG 1 cut(s) 61
Bse3DI GCAATG 1 cut(s) 613
BseBI CCWGG 2 cut(s) 145, 157
BseDI CCNNGG 2 cut(s) 165, 453
BseGI GGATG 4 cut(s) 175, 627, 772, 795
BseLI CCNNNNNNNGG 1 cut(s) 528
BseMI GCAATG 1 cut(s) 613
BseMII CTCAG 2 cut(s) 437, 702
BseNI ACTGG 1 cut(s) 130
BseRI GAGGAG 1 cut(s) 367
BseXI GCAGC 2 cut(s) 408, 526
BseYI CCCAGC 3 cut(s) 76, 706, 739
BshFI GGCC 2 cut(s) 48, 164
BshNI GGYRCC 1 cut(s) 623
BslI CCNNNNNNNGG 1 cut(s) 528
BsmAI GTCTC 3 cut(s) 193, 288, 526
BsmI GAATGC 1 cut(s) 134
BsnI GGCC 2 cut(s) 48, 164
Bso31I GGTCTC 1 cut(s) 288
Bsp143I GATC 2 cut(s) 580, 617
BspANI GGCC 2 cut(s) 48, 164
BspCNI CTCAG 2 cut(s) 438, 703
BspLI GGNNCC 1 cut(s) 625
BspPI GGATC 1 cut(s) 575
BspT107I GGYRCC 1 cut(s) 623
BspTNI GGTCTC 1 cut(s) 288
BsrDI GCAATG 1 cut(s) 613
BsrI ACTGG 1 cut(s) 130
BssECI CCNNGG 2 cut(s) 165, 453
BssMI GATC 2 cut(s) 580, 617
BssT1I CCWWGG 2 cut(s) 165, 453
Bst2UI CCWGG 2 cut(s) 145, 157
Bst4CI ACNGT 3 cut(s) 241, 569, 649
Bst6I CTCTTC 1 cut(s) 198
BstC8I GCNNGC 3 cut(s) 46, 519, 737
BstDEI CTNAG 5 cut(s) 61, 91, 381, 446, 711
BstF5I GGATG 4 cut(s) 175, 627, 772, 795
BstKTI GATC 2 cut(s) 583, 620
BstMAI GTCTC 3 cut(s) 193, 288, 526
BstMBI GATC 2 cut(s) 580, 617
BstMWI GCNNNNNNNGC 3 cut(s) 41, 161, 170
BstNI CCWGG 2 cut(s) 145, 157
BstSCI CCNGG 2 cut(s) 143, 155
BstV1I GCAGC 2 cut(s) 408, 526
BstX2I RGATCY 1 cut(s) 617
BstXI CCANNNNNNTGG 1 cut(s) 460
BstYI RGATCY 1 cut(s) 617
Bsu36I CCTNAGG 1 cut(s) 61
BsuRI GGCC 2 cut(s) 48, 164
BtsCI GGATG 4 cut(s) 175, 627, 772, 795
BtsIMutI CAGTG 1 cut(s) 779
Cac8I GCNNGC 3 cut(s) 46, 519, 737
CaiI CAGNNNCTG 1 cut(s) 245
Csp6I GTAC 1 cut(s) 658
CviAII CATG 4 cut(s) 218, 299, 572, 592
CviQI GTAC 1 cut(s) 658
DdeI CTNAG 5 cut(s) 61, 91, 381, 446, 711
DpnI GATC 2 cut(s) 582, 619
DpnII GATC 2 cut(s) 580, 617
DraI TTTAAA 1 cut(s) 415
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
Eco130I CCWWGG 2 cut(s) 165, 453
Eco147I AGGCCT 1 cut(s) 164
Eco31I GGTCTC 1 cut(s) 288
Eco81I CCTNAGG 1 cut(s) 61
EcoRI GAATTC 2 cut(s) 81, 481
EcoRII CCWGG 2 cut(s) 143, 155
EcoT14I CCWWGG 2 cut(s) 165, 453
ErhI CCWWGG 2 cut(s) 165, 453
FaeI CATG 4 cut(s) 221, 302, 575, 595
FaiI YATR 8 cut(s) 219, 300, 542, 573, 593, 728, 749, 761
FatI CATG 4 cut(s) 217, 298, 571, 591
Fnu4HI GCNGC 2 cut(s) 422, 515
FokI GGATG 4 cut(s) 182, 614, 779, 802
Fsp4HI GCNGC 2 cut(s) 422, 515
FspBI CTAG 2 cut(s) 357, 695
GluI GCNGC 2 cut(s) 422, 515
GsaI CCCAGC 3 cut(s) 80, 710, 743
HaeIII GGCC 2 cut(s) 48, 164
Hin1II CATG 4 cut(s) 221, 302, 575, 595
HinfI GANTC 4 cut(s) 188, 335, 401, 670
HphI GGTGA 1 cut(s) 397
Hpy166II GTNNAC 2 cut(s) 287, 316
Hpy188I TCNGA 3 cut(s) 87, 109, 198
Hpy188III TCNNGA 2 cut(s) 445, 562
Hpy8I GTNNAC 2 cut(s) 287, 316
HpyAV CCTTC 1 cut(s) 154
HpyCH4III ACNGT 3 cut(s) 241, 569, 649
HpyCH4V TGCA 3 cut(s) 344, 424, 595
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 161, 170
HpyF3I CTNAG 5 cut(s) 61, 91, 381, 446, 711
Hsp92II CATG 4 cut(s) 221, 302, 575, 595
Kzo9I GATC 2 cut(s) 580, 617
LmnI GCTCC 2 cut(s) 32, 87
Lsp1109I GCAGC 2 cut(s) 408, 526
LweI GCATC 3 cut(s) 160, 433, 780
MaeI CTAG 2 cut(s) 357, 695
MaeIII GTNAC 2 cut(s) 226, 267
MalI GATC 2 cut(s) 582, 619
MboI GATC 2 cut(s) 580, 617
MboII GAAGA 3 cut(s) 26, 185, 712
MflI RGATCY 1 cut(s) 617
MluCI AATT 6 cut(s) 39, 81, 416, 481, 722, 784
MlyI GAGTC 1 cut(s) 664
MmeI TCCRAC 4 cut(s) 10, 78, 312, 698
MnlI CCTC 6 cut(s) 111, 202, 388, 391, 539, 813
MroXI GAANNNNTTC 1 cut(s) 192
MseI TTAA 2 cut(s) 414, 774
MspA1I CMGCKG 1 cut(s) 710
MspR9I CCNGG 2 cut(s) 145, 157
Mva1269I GAATGC 1 cut(s) 134
MvaI CCWGG 2 cut(s) 145, 157
MwoI GCNNNNNNNGC 3 cut(s) 41, 161, 170
NdeII GATC 2 cut(s) 580, 617
NlaIII CATG 4 cut(s) 221, 302, 575, 595
NlaIV GGNNCC 1 cut(s) 625
NmuCI GTSAC 1 cut(s) 267
PceI AGGCCT 1 cut(s) 164
PctI GAATGC 1 cut(s) 134
PdmI GAANNNNTTC 1 cut(s) 192
PfeI GAWTC 3 cut(s) 188, 335, 401
PkrI GCNGC 2 cut(s) 423, 516
PleI GAGTC 1 cut(s) 664
PpsI GAGTC 1 cut(s) 664
Psp6I CCWGG 2 cut(s) 143, 155
PspFI CCCAGC 3 cut(s) 76, 706, 739
PspGI CCWGG 2 cut(s) 143, 155
PspN4I GGNNCC 1 cut(s) 625
PstNI CAGNNNCTG 1 cut(s) 245
PsuI RGATCY 1 cut(s) 617
PvuII CAGCTG 1 cut(s) 710
RsaI GTAC 1 cut(s) 659
RsaNI GTAC 1 cut(s) 658
SaqAI TTAA 2 cut(s) 414, 774
SatI GCNGC 2 cut(s) 422, 515
Sau3AI GATC 2 cut(s) 580, 617
SchI GAGTC 1 cut(s) 664
ScrFI CCNGG 2 cut(s) 145, 157
SfaNI GCATC 3 cut(s) 160, 433, 780
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
Sse9I AATT 6 cut(s) 39, 81, 416, 481, 722, 784
SseBI AGGCCT 1 cut(s) 164
SspMI CTAG 2 cut(s) 357, 695
StuI AGGCCT 1 cut(s) 164
StyD4I CCNGG 2 cut(s) 143, 155
StyI CCWWGG 2 cut(s) 165, 453
TaaI ACNGT 3 cut(s) 241, 569, 649
TasI AATT 6 cut(s) 39, 81, 416, 481, 722, 784
TfiI GAWTC 3 cut(s) 188, 335, 401
Tru1I TTAA 2 cut(s) 414, 774
Tru9I TTAA 2 cut(s) 414, 774
TscAI CASTG 1 cut(s) 786
TseFI GTSAC 1 cut(s) 267
TseI GCWGC 2 cut(s) 421, 514
Tsp45I GTSAC 1 cut(s) 267
TspDTI ATGAA 5 cut(s) 206, 315, 363, 580, 731
TspRI CASTG 1 cut(s) 786
XapI RAATTY 2 cut(s) 81, 481
XmnI GAANNNNTTC 1 cut(s) 192
XspI CTAG 2 cut(s) 357, 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.