RLG00000013213

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000348
Physical Location & Seq
Forward (+)
27763346 .. 27783345
20000 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013213

Sequence Viewer

Length: 420 bp
ATGTCTGAGAGGTCATACAGGACAAAGGAAAACAGTGAACTCCCTAACGGTACCATTAGGTTCTCGTCAAAGGTTGTTTCCATTGAGGAATCAGGGTACCTTAAGCTTGTGCACCTTGCTGATGGAACCATCCTCAAAGCCAAGGTTTTGGTTGGGTGTGATGGAGTCAACTCAGTGGTGGCAAAATGGCTGGGCTTCAAGAAGCCAGTCTTTTTAGAGAGATCCACGCACTTTGGGAATGGTGTTAGATCGGGTGCTGCTCCTTGTGATGATAAAAGTCTTTATTGGTTCTTTGGCTGGTCTCCCTCCAGCCAAGAGAAAGAGCTAGAGAAGAACTCTGCTCAGTTGGAAAAACATATCTTAAGCAAGCTCGGAGAGAGAGAAAGAGAGAGATATCTGATTCCACTTCCATCTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

140

Amino Acids

15.62

Weight (kDa)

9.1

Isoelectric Point (pI)

42.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 50, 96
AccB1I GGYRCC 2 cut(s) 50, 96
AclWI GGATC 1 cut(s) 216
AfaI GTAC 2 cut(s) 52, 98
AflII CTTAAG 2 cut(s) 101, 361
AgsI TTSAA 1 cut(s) 199
AluBI AGCT 3 cut(s) 106, 325, 370
AluI AGCT 3 cut(s) 106, 325, 370
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 1 cut(s) 306
Alw44I GTGCAC 1 cut(s) 110
AlwI GGATC 1 cut(s) 216
ApaLI GTGCAC 1 cut(s) 110
ApeKI GCWGC 1 cut(s) 257
Asp718I GGTACC 2 cut(s) 50, 96
BaeGI GKGCMC 1 cut(s) 114
BanI GGYRCC 2 cut(s) 50, 96
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 1 cut(s) 244
BccI CCATC 4 cut(s) 116, 137, 155, 418
BcoDI GTCTC 1 cut(s) 306
BfaI CTAG 1 cut(s) 326
BfrI CTTAAG 2 cut(s) 101, 361
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
BmiI GGNNCC 3 cut(s) 52, 98, 127
BplI GAGNNNNNCTC 2 cut(s) 320, 352
BpmI CTGGAG 1 cut(s) 292
BsaI GGTCTC 1 cut(s) 306
BsaJI CCNNGG 1 cut(s) 141
Bse1I ACTGG 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 1 cut(s) 129
BseMII CTCAG 2 cut(s) 186, 356
BseNI ACTGG 1 cut(s) 206
BseSI GKGCMC 1 cut(s) 114
BseXI GCAGC 1 cut(s) 244
BseYI CCCAGC 1 cut(s) 190
BshNI GGYRCC 2 cut(s) 50, 96
BsiHKAI GWGCWC 1 cut(s) 114
BsmAI GTCTC 1 cut(s) 306
Bso31I GGTCTC 1 cut(s) 306
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 2 cut(s) 221, 248
BspCNI CTCAG 2 cut(s) 185, 355
BspLI GGNNCC 3 cut(s) 52, 98, 127
BspPI GGATC 1 cut(s) 216
BspT107I GGYRCC 2 cut(s) 50, 96
BspTI CTTAAG 2 cut(s) 101, 361
BspTNI GGTCTC 1 cut(s) 306
BsrI ACTGG 1 cut(s) 206
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 2 cut(s) 221, 248
BssT1I CCWWGG 1 cut(s) 141
Bst4CI ACNGT 2 cut(s) 35, 50
BstAFI CTTAAG 2 cut(s) 101, 361
BstC8I GCNNGC 1 cut(s) 368
BstDEI CTNAG 3 cut(s) 6, 172, 342
BstF5I GGATG 1 cut(s) 129
BstKTI GATC 2 cut(s) 224, 251
BstMAI GTCTC 1 cut(s) 306
BstMBI GATC 2 cut(s) 221, 248
BstSLI GKGCMC 1 cut(s) 114
BstV1I GCAGC 1 cut(s) 244
BstX2I RGATCY 1 cut(s) 221
BstXI CCANNNNNNTGG 1 cut(s) 148
BstYI RGATCY 1 cut(s) 221
BtsCI GGATG 1 cut(s) 129
BtsIMutI CAGTG 2 cut(s) 40, 180
Cac8I GCNNGC 1 cut(s) 368
Csp6I GTAC 2 cut(s) 51, 97
CspCI CAANNNNNGTGG 2 cut(s) 214, 249
CviAII CATG 1 cut(s) 417
CviJI RGCY 9 cut(s) 106, 140, 190, 195, 205, 297, 312, 325, 370
CviKI_1 RGCY 9 cut(s) 106, 140, 190, 195, 205, 297, 312, 325, 370
CviQI GTAC 2 cut(s) 51, 97
DdeI CTNAG 3 cut(s) 6, 172, 342
DpnI GATC 2 cut(s) 223, 250
DpnII GATC 2 cut(s) 221, 248
Eco130I CCWWGG 1 cut(s) 141
Eco31I GGTCTC 1 cut(s) 306
Eco32I GATATC 1 cut(s) 395
EcoRV GATATC 1 cut(s) 395
EcoT14I CCWWGG 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 1 cut(s) 420
FaiI YATR 3 cut(s) 16, 357, 418
FalI AAGNNNNNCTT 2 cut(s) 194, 226
FatI CATG 1 cut(s) 416
Fnu4HI GCNGC 1 cut(s) 258
FokI GGATG 1 cut(s) 116
Fsp4HI GCNGC 1 cut(s) 258
FspBI CTAG 1 cut(s) 326
GluI GCNGC 1 cut(s) 258
GsaI CCCAGC 1 cut(s) 194
GsuI CTGGAG 1 cut(s) 292
Hin1II CATG 1 cut(s) 420
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HindIII AAGCTT 1 cut(s) 104
HinfI GANTC 3 cut(s) 89, 165, 400
Hpy166II GTNNAC 3 cut(s) 38, 112, 169
Hpy188I TCNGA 3 cut(s) 7, 374, 399
Hpy188III TCNNGA 1 cut(s) 199
Hpy8I GTNNAC 3 cut(s) 38, 112, 169
HpyCH4III ACNGT 2 cut(s) 35, 50
HpyCH4V TGCA 1 cut(s) 112
HpyF3I CTNAG 3 cut(s) 6, 172, 342
Hsp92II CATG 1 cut(s) 420
KpnI GGTACC 2 cut(s) 54, 100
Kzo9I GATC 2 cut(s) 221, 248
LmnI GCTCC 1 cut(s) 265
LpnPI CCDG 6 cut(s) 4, 78, 176, 219, 283, 322
Lsp1109I GCAGC 1 cut(s) 244
MaeI CTAG 1 cut(s) 326
MalI GATC 2 cut(s) 223, 250
MboI GATC 2 cut(s) 221, 248
MboII GAAGA 1 cut(s) 343
MflI RGATCY 1 cut(s) 221
MhlI GDGCHC 1 cut(s) 114
MlyI GAGTC 1 cut(s) 174
MmeI TCCRAC 1 cut(s) 327
MnlI CCTC 4 cut(s) 3, 79, 143, 316
MseI TTAA 2 cut(s) 102, 362
MslI CAYNNNNRTG 1 cut(s) 415
MspCI CTTAAG 2 cut(s) 101, 361
NdeII GATC 2 cut(s) 221, 248
NlaIII CATG 1 cut(s) 420
NlaIV GGNNCC 3 cut(s) 52, 98, 127
PfeI GAWTC 2 cut(s) 89, 400
PkrI GCNGC 1 cut(s) 259
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
PspFI CCCAGC 1 cut(s) 190
PspN4I GGNNCC 3 cut(s) 52, 98, 127
PsuI RGATCY 1 cut(s) 221
RsaI GTAC 2 cut(s) 52, 98
RsaNI GTAC 2 cut(s) 51, 97
RseI CAYNNNNRTG 1 cut(s) 415
SaqAI TTAA 2 cut(s) 102, 362
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 2 cut(s) 221, 248
SchI GAGTC 1 cut(s) 174
SduI GDGCHC 1 cut(s) 114
SetI ASST 9 cut(s) 14, 62, 75, 102, 108, 117, 147, 327, 372
SmiMI CAYNNNNRTG 1 cut(s) 415
SmlI CTYRAG 2 cut(s) 101, 361
SmoI CTYRAG 2 cut(s) 101, 361
SspMI CTAG 1 cut(s) 326
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 2 cut(s) 35, 50
TfiI GAWTC 2 cut(s) 89, 400
Tru1I TTAA 2 cut(s) 102, 362
Tru9I TTAA 2 cut(s) 102, 362
TscAI CASTG 2 cut(s) 40, 180
TseI GCWGC 1 cut(s) 257
TspRI CASTG 2 cut(s) 40, 180
Vha464I CTTAAG 2 cut(s) 101, 361
VneI GTGCAC 1 cut(s) 110
XspI CTAG 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.