Rh6BG232000

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000348
Physical Location & Seq
Reverse (-)
43765184 .. 43765537
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG232000.1

Sequence Viewer

Length: 225 bp
ATGCAAGTAGTAGAGGACGTTGTGATTGTAGGAGCTGGAATTTCTGGCCTCACAACCGCCGTGGGACTTCACAGGCTGGGCATTAGGAGCTTAGTGCTGGAATCGTTTCATAGCTTGAGGATAACAGGGTTTGCACTCACAACATGGACTAATGCGTGGAAGGCTTTAGATGCCATTGGTGTTGGTGATTATTTACGGCAGCAACACCTGACTCTTCTTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

74

Amino Acids

7.96

Weight (kDa)

6.82

Isoelectric Point (pI)

14.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 6 - 68 5.7e-08 FAD binding domain
DAO PF01266 6 - 37 2.6e-06 FAD dependent oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 57
AcsI RAATTY 1 cut(s) 39
AluBI AGCT 3 cut(s) 35, 90, 114
AluI AGCT 3 cut(s) 35, 90, 114
AoxI GGCC 1 cut(s) 46
ApeKI GCWGC 1 cut(s) 199
ApoI RAATTY 1 cut(s) 39
Asp700I GAANNNNTTC 1 cut(s) 105
AsuHPI GGTGA 1 cut(s) 197
BbvI GCAGC 1 cut(s) 211
BceAI ACGGC 2 cut(s) 44, 212
BisI GCNGC 1 cut(s) 200
BlsI GCNGC 1 cut(s) 201
BmsI GCATC 1 cut(s) 160
BpuEI CTTGAG 1 cut(s) 136
BsaJI CCNNGG 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 60
BseXI GCAGC 1 cut(s) 211
BseYI CCCAGC 1 cut(s) 76
BshFI GGCC 1 cut(s) 48
BslFI GGGAC 1 cut(s) 78
BsmFI GGGAC 1 cut(s) 78
BsnI GGCC 1 cut(s) 48
BspACI CCGC 1 cut(s) 57
BspANI GGCC 1 cut(s) 48
BssECI CCNNGG 1 cut(s) 60
Bst6I CTCTTC 1 cut(s) 219
BstDEI CTNAG 1 cut(s) 91
BstDSI CCRYGG 1 cut(s) 60
BstMWI GCNNNNNNNGC 3 cut(s) 87, 161, 170
BstV1I GCAGC 1 cut(s) 211
BsuRI GGCC 1 cut(s) 48
BtgI CCRYGG 1 cut(s) 60
CspCI CAANNNNNGTGG 2 cut(s) 42, 77
CviAII CATG 1 cut(s) 144
CviJI RGCY 6 cut(s) 35, 48, 76, 90, 114, 164
CviKI_1 RGCY 6 cut(s) 35, 48, 76, 90, 114, 164
DdeI CTNAG 1 cut(s) 91
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
FaeI CATG 1 cut(s) 147
FaiI YATR 2 cut(s) 111, 145
FaqI GGGAC 1 cut(s) 78
FatI CATG 1 cut(s) 143
Fnu4HI GCNGC 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 200
GluI GCNGC 1 cut(s) 200
GsaI CCCAGC 1 cut(s) 80
HaeIII GGCC 1 cut(s) 48
Hin1II CATG 1 cut(s) 147
HinfI GANTC 2 cut(s) 101, 211
HphI GGTGA 1 cut(s) 197
HpyAV CCTTC 1 cut(s) 154
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 2 cut(s) 4, 134
HpyF10VI GCNNNNNNNGC 3 cut(s) 87, 161, 170
HpyF3I CTNAG 1 cut(s) 91
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 1 cut(s) 147
LmnI GCTCC 2 cut(s) 32, 87
LpnPI CCDG 7 cut(s) 21, 30, 58, 62, 83, 111, 221
Lsp1109I GCAGC 1 cut(s) 211
LweI GCATC 1 cut(s) 160
MaeII ACGT 1 cut(s) 18
MboII GAAGA 1 cut(s) 206
MluCI AATT 1 cut(s) 39
MlyI GAGTC 1 cut(s) 205
MnlI CCTC 3 cut(s) 7, 59, 111
MroXI GAANNNNTTC 1 cut(s) 105
MwoI GCNNNNNNNGC 3 cut(s) 87, 161, 170
NlaIII CATG 1 cut(s) 147
PdmI GAANNNNTTC 1 cut(s) 105
PfeI GAWTC 1 cut(s) 101
PkrI GCNGC 1 cut(s) 201
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
PspFI CCCAGC 1 cut(s) 76
SatI GCNGC 1 cut(s) 200
SchI GAGTC 1 cut(s) 205
SetI ASST 5 cut(s) 21, 37, 92, 116, 210
SfaNI GCATC 1 cut(s) 160
SmlI CTYRAG 1 cut(s) 115
SmoI CTYRAG 1 cut(s) 115
Sse9I AATT 1 cut(s) 39
SsiI CCGC 1 cut(s) 57
TaiI ACGT 1 cut(s) 21
TasI AATT 1 cut(s) 39
TfiI GAWTC 1 cut(s) 101
TseI GCWGC 1 cut(s) 199
TspDTI ATGAA 1 cut(s) 98
XapI RAATTY 1 cut(s) 39
XmnI GAANNNNTTC 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.