Rorug06G0117900

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000348
Physical Location & Seq
Forward (+)
16101078 .. 16103724
2647 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0117900.1

Sequence Viewer

Length: 372 bp
ATGGGTTTGTGGGCAATTGCGCAGTTGATAAAGTTAAGGCTGTTTTCCTTATCCTATCATATTATGCTTATTATTGATTTGGTGAGGTTGGAGATTGAAGGTTTGGATATCGCTGGCGGCGTCAAGGCTAACACCTCAAACAAGCCAACCCAAAATCCGAATGCAAACCTTTCTTCGTCGGCTCTCTTTGTGGGTATGGATTTTAACAGGAACAAGATTGAAATGTATGAGTGGCGGAACTATGTAGGAGGCTCCTTGGGCTATAGCCTAACCGAGATTTGGGATGAAAACCCTTCAAAACTCTCCAAGTCTCCATACTCCAATCTGAATGCACAGAACAGCCTGAAATCTTACTTGGGGAGCGTGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

123

Amino Acids

13.73

Weight (kDa)

7.95

Isoelectric Point (pI)

36.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 21
AciI CCGC 2 cut(s) 117, 235
AcyI GRCGYC 1 cut(s) 120
AfiI CCNNNNNNNGG 1 cut(s) 279
AgsI TTSAA 3 cut(s) 98, 221, 297
AjuI GAANNNNNNNTTGG 2 cut(s) 338, 370
Alw26I GTCTC 1 cut(s) 315
AspLEI GCGC 1 cut(s) 22
AsuHPI GGTGA 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 315
BfmI CTRYAG 1 cut(s) 262
BisI GCNGC 1 cut(s) 118
BlsI GCNGC 1 cut(s) 119
BmiI GGNNCC 1 cut(s) 253
BsaHI GRCGYC 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 255
Bsc4I CCNNNNNNNGG 1 cut(s) 279
BseDI CCNNGG 1 cut(s) 255
BseGI GGATG 1 cut(s) 289
BseLI CCNNNNNNNGG 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 279
BsmAI GTCTC 1 cut(s) 315
BsmI GAATGC 2 cut(s) 166, 334
BspACI CCGC 2 cut(s) 117, 235
BspLI GGNNCC 1 cut(s) 253
BssECI CCNNGG 1 cut(s) 255
BssNI GRCGYC 1 cut(s) 120
BssT1I CCWWGG 1 cut(s) 255
BstACI GRCGYC 1 cut(s) 120
BstC8I GCNNGC 1 cut(s) 115
BstF5I GGATG 1 cut(s) 289
BstHHI GCGC 1 cut(s) 22
BstMAI GTCTC 1 cut(s) 315
BstMWI GCNNNNNNNGC 1 cut(s) 258
BstSFI CTRYAG 1 cut(s) 262
BtsCI GGATG 1 cut(s) 289
Cac8I GCNNGC 1 cut(s) 115
CfoI GCGC 1 cut(s) 22
CseI GACGC 1 cut(s) 109
CviJI RGCY 8 cut(s) 40, 128, 145, 182, 252, 261, 267, 342
CviKI_1 RGCY 8 cut(s) 40, 128, 145, 182, 252, 261, 267, 342
EciI GGCGGA 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 255
Eco32I GATATC 1 cut(s) 109
EcoRV GATATC 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 255
FaiI YATR 7 cut(s) 60, 65, 197, 228, 243, 264, 316
Fnu4HI GCNGC 1 cut(s) 118
FokI GGATG 1 cut(s) 296
Fsp4HI GCNGC 1 cut(s) 118
FspI TGCGCA 1 cut(s) 21
GlaI GCGC 1 cut(s) 21
GluI GCNGC 1 cut(s) 118
HgaI GACGC 1 cut(s) 109
HhaI GCGC 1 cut(s) 22
Hin1I GRCGYC 1 cut(s) 120
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HphI GGTGA 1 cut(s) 94
Hpy188I TCNGA 2 cut(s) 159, 327
Hpy99I CGWCG 1 cut(s) 181
HpyAV CCTTC 2 cut(s) 92, 303
HpyCH4V TGCA 2 cut(s) 164, 332
HpyF10VI GCNNNNNNNGC 1 cut(s) 258
Hsp92I GRCGYC 1 cut(s) 120
HspAI GCGC 1 cut(s) 20
LmnI GCTCC 2 cut(s) 257, 360
LpnPI CCDG 3 cut(s) 99, 193, 356
MboII GAAGA 1 cut(s) 165
MfeI CAATTG 1 cut(s) 15
MluCI AATT 2 cut(s) 15, 367
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 3 cut(s) 78, 145, 242
MseI TTAA 2 cut(s) 35, 204
MunI CAATTG 1 cut(s) 15
Mva1269I GAATGC 2 cut(s) 166, 334
MwoI GCNNNNNNNGC 1 cut(s) 258
NlaIV GGNNCC 1 cut(s) 253
NsbI TGCGCA 1 cut(s) 21
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PctI GAATGC 2 cut(s) 166, 334
PkrI GCNGC 1 cut(s) 119
PspN4I GGNNCC 1 cut(s) 253
SaqAI TTAA 2 cut(s) 35, 204
SatI GCNGC 1 cut(s) 118
SetI ASST 4 cut(s) 89, 103, 137, 171
SfcI CTRYAG 1 cut(s) 262
Sse9I AATT 2 cut(s) 15, 367
SsiI CCGC 2 cut(s) 117, 235
StyI CCWWGG 1 cut(s) 255
TasI AATT 2 cut(s) 15, 367
TauI GCSGC 1 cut(s) 120
Tru1I TTAA 2 cut(s) 35, 204
Tru9I TTAA 2 cut(s) 35, 204
TspDTI ATGAA 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.