Rmu_sc0000258.1_g000094

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000258.1
OG0000348
Physical Location & Seq
Reverse (-)
431716 .. 436982
5267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000258.1_g000094.1.cds

Sequence Viewer

Length: 1173 bp
atgcaagtagtagaggacgttgtgattgtaggagctggaatttctggcctcacaaccgccctgggacttcacaggctgggcattaggagcttagtgctggaatcgtttcatagcttgaggataacagggtttgcactcacaacatggactaatgcgtggaaggctttagatgccattggtgttggtgattatttacggcagcaacacctgactcttcttggtggagaccatgaaaatcgttgtgtgaaaaggaagttgctgttggaagcccttgcaagtgaacttcctagtggcaccattaggttctcttcaaaggttgtttccattgaggaatcaggctactttaagctggtgcatcttgctgacggaaccatcctcaaagccaaggttttggttggatgtgatggagtaaactcagtggttgcaaaatggctgggtttcaagccgccggtctttacaggaagatctgccattcgaggttgtgctgagttcaagagcagccatgagtttgatcccatgttaatgcagtaccttgggaatggtgttagatctggtaccgttccttgtgatgataaaaatgtttactggttcttcagttggtctccctccagccaagagaaagagctagaaggaaacccagctcagttgaagcaatatatgttaagcaagctcgggaaggtgtcagatgaagtaagggctgttgtggaaaacactaatttggatgcttttatatcctctcccttgagatataggcatccttgggagcttctttggggaaatattagcaaaggtactgtatgtgtagctggagacgcgctccaccccatgaccccagacattgcacaaggcggctgtgctgcattagaggacggtgttgtattagcaaggtgtcttggtgaggccttgttgaagaatcggaggcaagaaattagaaatgaaggtgaacaaggaaaagaggaatataaaatgattgaaagagggttgaataagtatgccagtgagaggaaatggagaagttttgatcttattagtgcagcttatgtggttggttttatacaggaggctcatggaaaaataatgactttcttgaggaacaagttttttactccaatcctggctgggttgctgttgaagaaggctgattatgattgtggtaagctcagaagctcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

390

Amino Acids

43.13

Weight (kDa)

8.78

Isoelectric Point (pI)

35.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 554
AccB1I GGYRCC 2 cut(s) 293, 554
AccII CGCG 1 cut(s) 815
AciI CCGC 3 cut(s) 57, 446, 849
AclWI GGATC 1 cut(s) 506
AcsI RAATTY 1 cut(s) 39
AcuI CTGAAG 1 cut(s) 577
AfaI GTAC 3 cut(s) 530, 556, 793
AfiI CCNNNNNNNGG 1 cut(s) 1002
AgsI TTSAA 8 cut(s) 312, 442, 493, 649, 910, 974, 985, 1132
AjnI CCWGG 2 cut(s) 60, 1113
AjuI GAANNNNNNNTTGG 2 cut(s) 245, 277
Alw26I GTCTC 3 cut(s) 219, 606, 804
AlwI GGATC 1 cut(s) 506
Ama87I CYCGRG 1 cut(s) 671
AoxI GGCC 2 cut(s) 46, 900
ApeKI GCWGC 4 cut(s) 199, 498, 857, 1034
ApoI RAATTY 1 cut(s) 39
Asp700I GAANNNNTTC 1 cut(s) 105
Asp718I GGTACC 1 cut(s) 554
AspLEI GCGC 1 cut(s) 817
AsuHPI GGTGA 3 cut(s) 197, 908, 953
AvaI CYCGRG 1 cut(s) 671
BanI GGYRCC 2 cut(s) 293, 554
BbvI GCAGC 4 cut(s) 211, 510, 844, 1046
BccI CCATC 2 cut(s) 380, 398
BceAI ACGGC 1 cut(s) 212
BciT130I CCWGG 2 cut(s) 62, 1115
BcoDI GTCTC 3 cut(s) 219, 606, 804
BfaI CTAG 2 cut(s) 288, 626
BglII AGATCT 2 cut(s) 464, 548
BisI GCNGC 6 cut(s) 200, 446, 499, 850, 858, 1035
BlsI GCNGC 6 cut(s) 201, 447, 500, 851, 859, 1036
Bme1390I CCNGG 2 cut(s) 62, 1115
BmeT110I CYCGRG 1 cut(s) 671
BmiI GGNNCC 3 cut(s) 295, 370, 556
BmrFI CCNGG 2 cut(s) 62, 1115
BmsI GCATC 4 cut(s) 160, 364, 712, 763
BplI GAGNNNNNCTC 2 cut(s) 801, 833
BpmI CTGGAG 2 cut(s) 592, 828
BpuEI CTTGAG 3 cut(s) 136, 763, 1108
BsaI GGTCTC 2 cut(s) 219, 606
BsaJI CCNNGG 5 cut(s) 60, 61, 384, 532, 758
Bsc4I CCNNNNNNNGG 1 cut(s) 1002
Bse118I RCCGGY 1 cut(s) 448
Bse1I ACTGG 2 cut(s) 590, 996
Bse3DI GCAATG 1 cut(s) 837
BseBI CCWGG 2 cut(s) 62, 1115
BseDI CCNNGG 5 cut(s) 60, 61, 384, 532, 758
BseGI GGATG 4 cut(s) 372, 404, 727, 754
BseLI CCNNNNNNNGG 1 cut(s) 1002
BseMI GCAATG 1 cut(s) 837
BseMII CTCAG 3 cut(s) 429, 477, 656
BseNI ACTGG 2 cut(s) 590, 996
BseXI GCAGC 4 cut(s) 211, 510, 844, 1046
BseYI CCCAGC 4 cut(s) 76, 433, 637, 1118
BsgI GTGCAG 1 cut(s) 1053
Bsh1236I CGCG 1 cut(s) 815
BshFI GGCC 2 cut(s) 48, 902
BshNI GGYRCC 2 cut(s) 293, 554
BsiHKCI CYCGRG 1 cut(s) 671
BsiSI CCGG 1 cut(s) 449
BslFI GGGAC 1 cut(s) 78
BslI CCNNNNNNNGG 1 cut(s) 1002
BsmAI GTCTC 3 cut(s) 219, 606, 804
BsmBI CGTCTC 1 cut(s) 804
BsmFI GGGAC 1 cut(s) 78
BsnI GGCC 2 cut(s) 48, 902
Bso31I GGTCTC 2 cut(s) 219, 606
BsoBI CYCGRG 1 cut(s) 671
Bsp143I GATC 4 cut(s) 464, 511, 548, 1021
BspACI CCGC 3 cut(s) 57, 446, 849
BspANI GGCC 2 cut(s) 48, 902
BspCNI CTCAG 4 cut(s) 428, 478, 655, 1173
BspFNI CGCG 1 cut(s) 815
BspLI GGNNCC 3 cut(s) 295, 370, 556
BspPI GGATC 1 cut(s) 506
BspT107I GGYRCC 2 cut(s) 293, 554
BspTNI GGTCTC 2 cut(s) 219, 606
BsrDI GCAATG 1 cut(s) 837
BsrFI RCCGGY 1 cut(s) 448
BsrI ACTGG 2 cut(s) 590, 996
BssAI RCCGGY 1 cut(s) 448
BssECI CCNNGG 5 cut(s) 60, 61, 384, 532, 758
BssMI GATC 4 cut(s) 464, 511, 548, 1021
BssT1I CCWWGG 3 cut(s) 384, 532, 758
Bst2UI CCWGG 2 cut(s) 62, 1115
Bst4CI ACNGT 3 cut(s) 559, 796, 872
Bst6I CTCTTC 2 cut(s) 219, 313
BstC8I GCNNGC 1 cut(s) 668
BstDEI CTNAG 5 cut(s) 91, 415, 486, 642, 1160
BstF5I GGATG 4 cut(s) 372, 404, 727, 754
BstFNI CGCG 1 cut(s) 815
BstHHI GCGC 1 cut(s) 817
BstKTI GATC 4 cut(s) 467, 514, 551, 1024
BstMAI GTCTC 3 cut(s) 219, 606, 804
BstMBI GATC 4 cut(s) 464, 511, 548, 1021
BstMWI GCNNNNNNNGC 4 cut(s) 87, 161, 170, 812
BstNI CCWGG 2 cut(s) 62, 1115
BstSCI CCNGG 2 cut(s) 60, 1113
BstUI CGCG 1 cut(s) 815
BstV1I GCAGC 4 cut(s) 211, 510, 844, 1046
BstX2I RGATCY 2 cut(s) 464, 548
BstXI CCANNNNNNTGG 1 cut(s) 391
BstYI RGATCY 2 cut(s) 464, 548
BsuRI GGCC 2 cut(s) 48, 902
BtsCI GGATG 4 cut(s) 372, 404, 727, 754
BtsIMutI CAGTG 2 cut(s) 423, 1003
Cac8I GCNNGC 1 cut(s) 668
CfoI GCGC 1 cut(s) 817
Cfr10I RCCGGY 1 cut(s) 448
CseI GACGC 1 cut(s) 821
Csp6I GTAC 3 cut(s) 529, 555, 792
CviAII CATG 6 cut(s) 144, 230, 503, 517, 826, 1067
CviQI GTAC 3 cut(s) 529, 555, 792
DdeI CTNAG 5 cut(s) 91, 415, 486, 642, 1160
DpnI GATC 4 cut(s) 466, 513, 550, 1023
DpnII GATC 4 cut(s) 464, 511, 548, 1021
Eam1104I CTCTTC 2 cut(s) 219, 313
EarI CTCTTC 2 cut(s) 219, 313
Eco130I CCWWGG 3 cut(s) 384, 532, 758
Eco147I AGGCCT 1 cut(s) 902
Eco31I GGTCTC 2 cut(s) 219, 606
Eco57I CTGAAG 1 cut(s) 577
Eco88I CYCGRG 1 cut(s) 671
EcoRII CCWGG 2 cut(s) 60, 1113
EcoT14I CCWWGG 3 cut(s) 384, 532, 758
ErhI CCWWGG 3 cut(s) 384, 532, 758
Esp3I CGTCTC 1 cut(s) 804
FaeI CATG 6 cut(s) 147, 233, 506, 520, 829, 1070
FaqI GGGAC 1 cut(s) 78
FatI CATG 6 cut(s) 143, 229, 502, 516, 825, 1066
Fnu4HI GCNGC 6 cut(s) 200, 446, 499, 850, 858, 1035
FokI GGATG 4 cut(s) 359, 411, 734, 741
Fsp4HI GCNGC 6 cut(s) 200, 446, 499, 850, 858, 1035
FspBI CTAG 2 cut(s) 288, 626
GlaI GCGC 1 cut(s) 816
GluI GCNGC 6 cut(s) 200, 446, 499, 850, 858, 1035
GsaI CCCAGC 4 cut(s) 80, 437, 641, 1122
GsuI CTGGAG 2 cut(s) 592, 828
HaeIII GGCC 2 cut(s) 48, 902
HapII CCGG 1 cut(s) 449
HgaI GACGC 1 cut(s) 821
HhaI GCGC 1 cut(s) 817
Hin1II CATG 6 cut(s) 147, 233, 506, 520, 829, 1070
Hin6I GCGC 1 cut(s) 815
HinP1I GCGC 1 cut(s) 815
HinfI GANTC 4 cut(s) 101, 211, 332, 913
HpaII CCGG 1 cut(s) 449
HphI GGTGA 3 cut(s) 197, 908, 953
Hpy166II GTNNAC 4 cut(s) 281, 412, 583, 944
Hpy188I TCNGA 3 cut(s) 685, 918, 1163
Hpy188III TCNNGA 3 cut(s) 493, 673, 1087
Hpy8I GTNNAC 4 cut(s) 281, 412, 583, 944
HpyAV CCTTC 5 cut(s) 154, 623, 670, 932, 1129
HpyCH4III ACNGT 3 cut(s) 559, 796, 872
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 9 cut(s) 4, 134, 275, 355, 425, 526, 842, 860, 1034
HpyF10VI GCNNNNNNNGC 4 cut(s) 87, 161, 170, 812
HpyF3I CTNAG 5 cut(s) 91, 415, 486, 642, 1160
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 6 cut(s) 147, 233, 506, 520, 829, 1070
HspAI GCGC 1 cut(s) 815
KpnI GGTACC 1 cut(s) 558
Kzo9I GATC 4 cut(s) 464, 511, 548, 1021
LmnI GCTCC 4 cut(s) 32, 87, 763, 822
Lsp1109I GCAGC 4 cut(s) 211, 510, 844, 1046
LweI GCATC 4 cut(s) 160, 364, 712, 763
MaeI CTAG 2 cut(s) 288, 626
MaeII ACGT 1 cut(s) 18
MalI GATC 4 cut(s) 466, 513, 550, 1023
MboI GATC 4 cut(s) 464, 511, 548, 1021
MboII GAAGA 6 cut(s) 206, 300, 474, 583, 922, 1144
MflI RGATCY 2 cut(s) 464, 548
MluCI AATT 3 cut(s) 39, 715, 927
MlyI GAGTC 1 cut(s) 205
MmeI TCCRAC 2 cut(s) 243, 376
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 4 cut(s) 345, 521, 662, 1171
MslI CAYNNNNRTG 1 cut(s) 521
MspI CCGG 1 cut(s) 449
MspR9I CCNGG 2 cut(s) 62, 1115
MvaI CCWGG 2 cut(s) 62, 1115
MvnI CGCG 1 cut(s) 815
MwoI GCNNNNNNNGC 4 cut(s) 87, 161, 170, 812
NdeII GATC 4 cut(s) 464, 511, 548, 1021
NlaIII CATG 6 cut(s) 147, 233, 506, 520, 829, 1070
NlaIV GGNNCC 3 cut(s) 295, 370, 556
PasI CCCWGGG 1 cut(s) 61
PceI AGGCCT 1 cut(s) 902
PdmI GAANNNNTTC 1 cut(s) 105
PfeI GAWTC 3 cut(s) 101, 332, 913
PkrI GCNGC 6 cut(s) 201, 447, 500, 851, 859, 1036
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
Psp6I CCWGG 2 cut(s) 60, 1113
PspFI CCCAGC 4 cut(s) 76, 433, 637, 1118
PspGI CCWGG 2 cut(s) 60, 1113
PspN4I GGNNCC 3 cut(s) 295, 370, 556
PsuI RGATCY 2 cut(s) 464, 548
RsaI GTAC 3 cut(s) 530, 556, 793
RsaNI GTAC 3 cut(s) 529, 555, 792
RseI CAYNNNNRTG 1 cut(s) 521
SaqAI TTAA 4 cut(s) 345, 521, 662, 1171
SatI GCNGC 6 cut(s) 200, 446, 499, 850, 858, 1035
Sau3AI GATC 4 cut(s) 464, 511, 548, 1021
SchI GAGTC 1 cut(s) 205
ScrFI CCNGG 2 cut(s) 62, 1115
SfaNI GCATC 4 cut(s) 160, 364, 712, 763
SmiMI CAYNNNNRTG 1 cut(s) 521
SmlI CTYRAG 3 cut(s) 115, 742, 1087
SmoI CTYRAG 3 cut(s) 115, 742, 1087
Sse9I AATT 3 cut(s) 39, 715, 927
SseBI AGGCCT 1 cut(s) 902
SsiI CCGC 3 cut(s) 57, 446, 849
SspI AATATT 1 cut(s) 781
SspMI CTAG 2 cut(s) 288, 626
StuI AGGCCT 1 cut(s) 902
StyD4I CCNGG 2 cut(s) 60, 1113
StyI CCWWGG 3 cut(s) 384, 532, 758
TaaI ACNGT 3 cut(s) 559, 796, 872
TaiI ACGT 1 cut(s) 21
TaqI TCGA 1 cut(s) 475
TasI AATT 3 cut(s) 39, 715, 927
TauI GCSGC 2 cut(s) 448, 852
TfiI GAWTC 3 cut(s) 101, 332, 913
Tru1I TTAA 4 cut(s) 345, 521, 662, 1171
Tru9I TTAA 4 cut(s) 345, 521, 662, 1171
TscAI CASTG 2 cut(s) 423, 1003
TseI GCWGC 4 cut(s) 199, 498, 857, 1034
TspDTI ATGAA 4 cut(s) 98, 246, 702, 951
TspGWI ACGGA 1 cut(s) 381
TspRI CASTG 2 cut(s) 423, 1003
XapI RAATTY 1 cut(s) 39
XmnI GAANNNNTTC 1 cut(s) 105
XspI CTAG 2 cut(s) 288, 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.