Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000348

Physical Location & Seq

Genomic Coordinates Forward (+)

32899858 .. 32900753

Gene Structure 896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG292300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGACACAAATGTGGAGGATGTGGTGATAGTCGGAGGAGGGATAGCCGGGCTAGCGACAGCGGTGGCGCTGAAGAGAGCTGGAATAGAAGCGTTGGTGTTGGAGAGATCGGAAGGGCTGCGAGCCACTGGTGCAGCCTTGGGTCTATTCCCAAACGCCTGGTGTGCTCTCGATGCCTTGGGGGTTTCTCACAAGCTTGCTTCTTATACCCCCACACTCTCAAGAATTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009540 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009743 GO:0009756 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010182 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0023052 GO:0030104 GO:0031967 GO:0031975 GO:0032501 GO:0032787 GO:0042221 GO:0042440 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046148 GO:0046165 GO:0046394 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051716 GO:0052662 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

77

Amino Acids

7.87

Weight (kDa)

5.62

Isoelectric Point (pI)

30.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAO	PF01266	7 - 57	7.4e-11	FAD dependent oxidoreductase
FAD_binding_3	PF01494	7 - 70	6.5e-10	FAD binding domain
FAD_binding_2	PF00890	7 - 43	1.2e-06	FAD binding domain
NAD_binding_8	PF13450	10 - 40	2.5e-07	NAD(P)-binding Rossmann-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38540 AT5G05320
fragaria_vesca	FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica	MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica	Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis	pycom05g11780 pycom05g11790
rosa_chinensis	RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata	RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora	Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii	Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa	Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha	Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana	Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	62
AcuI	CTGAAG	1 cut(s)	92
AjnI	CCWGG	1 cut(s)	158
AleI	CACNNNNGTG	1 cut(s)	11
AluBI	AGCT	2 cut(s)	80, 196
AluI	AGCT	2 cut(s)	80, 196
Alw21I	GWGCWC	1 cut(s)	169
ApeKI	GCWGC	2 cut(s)	118, 134
AspLEI	GCGC	1 cut(s)	70
AsuC2I	CCSGG	1 cut(s)	49
AsuHPI	GGTGA	1 cut(s)	37
AsuNHI	GCTAGC	1 cut(s)	52
Bbv12I	GWGCWC	1 cut(s)	169
BbvI	GCAGC	2 cut(s)	105, 146
BciT130I	CCWGG	1 cut(s)	160
BcnI	CCSGG	1 cut(s)	49
BfaI	CTAG	1 cut(s)	53
BfoI	RGCGCY	1 cut(s)	71
BisI	GCNGC	2 cut(s)	119, 135
BlsI	GCNGC	2 cut(s)	120, 136
Bme1390I	CCNGG	2 cut(s)	49, 160
BmrFI	CCNGG	2 cut(s)	49, 160
BmsI	GCATC	1 cut(s)	163
BmtI	GCTAGC	1 cut(s)	56
BpuEI	CTTGAG	1 cut(s)	205
BpuMI	CCSGG	1 cut(s)	49
BsaJI	CCNNGG	2 cut(s)	138, 177
Bse1I	ACTGG	1 cut(s)	133
BseBI	CCWGG	1 cut(s)	160
BseDI	CCNNGG	2 cut(s)	138, 177
BseGI	GGATG	1 cut(s)	25
BseNI	ACTGG	1 cut(s)	133
BseRI	GAGGAG	1 cut(s)	51
BseXI	GCAGC	2 cut(s)	105, 146
BsgI	GTGCAG	1 cut(s)	153
BsiHKAI	GWGCWC	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	48
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp143I	GATC	1 cut(s)	107
BspACI	CCGC	1 cut(s)	62
BspOI	GCTAGC	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	133
BssECI	CCNNGG	2 cut(s)	138, 177
BssMI	GATC	1 cut(s)	107
BssT1I	CCWWGG	2 cut(s)	138, 177
Bst2UI	CCWGG	1 cut(s)	160
Bst6I	CTCTTC	1 cut(s)	68
BstC8I	GCNNGC	3 cut(s)	54, 123, 198
BstF5I	GGATG	1 cut(s)	25
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	1 cut(s)	110
BstMBI	GATC	1 cut(s)	107
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 131, 164, 173
BstNI	CCWGG	1 cut(s)	160
BstSCI	CCNGG	2 cut(s)	47, 158
BstV1I	GCAGC	2 cut(s)	105, 146
BstXI	CCANNNNNNTGG	1 cut(s)	159
BtsCI	GGATG	1 cut(s)	25
BtsIMutI	CAGTG	1 cut(s)	126
Cac8I	GCNNGC	3 cut(s)	54, 123, 198
CfoI	GCGC	1 cut(s)	70
CviJI	RGCY	7 cut(s)	47, 52, 80, 118, 125, 137, 196
CviKI_1	RGCY	7 cut(s)	47, 52, 80, 118, 125, 137, 196
DpnI	GATC	1 cut(s)	109
DpnII	GATC	1 cut(s)	107
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Eco130I	CCWWGG	2 cut(s)	138, 177
Eco57I	CTGAAG	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	158
EcoT14I	CCWWGG	2 cut(s)	138, 177
ErhI	CCWWGG	2 cut(s)	138, 177
FaiI	YATR	2 cut(s)	207, 230
Fnu4HI	GCNGC	2 cut(s)	119, 135
FokI	GGATG	1 cut(s)	32
Fsp4HI	GCNGC	2 cut(s)	119, 135
FspBI	CTAG	1 cut(s)	53
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	2 cut(s)	119, 135
HaeII	RGCGCY	1 cut(s)	71
HapII	CCGG	1 cut(s)	48
HhaI	GCGC	1 cut(s)	70
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HindIII	AAGCTT	1 cut(s)	194
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	1 cut(s)	37
Hpy188I	TCNGA	2 cut(s)	35, 112
Hpy188III	TCNNGA	2 cut(s)	170, 222
HpyAV	CCTTC	1 cut(s)	107
HpyCH4V	TGCA	1 cut(s)	134
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 131, 164, 173
HspAI	GCGC	1 cut(s)	68
Kzo9I	GATC	1 cut(s)	107
LpnPI	CCDG	5 cut(s)	61, 66, 114, 145, 172
Lsp1109I	GCAGC	2 cut(s)	105, 146
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	1 cut(s)	53
MalI	GATC	1 cut(s)	109
MboI	GATC	1 cut(s)	107
MboII	GAAGA	1 cut(s)	85
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	1 cut(s)	225
MmeI	TCCRAC	2 cut(s)	13, 81
MnlI	CCTC	3 cut(s)	10, 29, 32
MslI	CAYNNNNRTG	1 cut(s)	11
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	2 cut(s)	49, 160
MvaI	CCWGG	1 cut(s)	160
MwoI	GCNNNNNNNGC	4 cut(s)	53, 131, 164, 173
NciI	CCSGG	1 cut(s)	49
NdeII	GATC	1 cut(s)	107
NheI	GCTAGC	1 cut(s)	52
OliI	CACNNNNGTG	1 cut(s)	11
PkrI	GCNGC	2 cut(s)	120, 136
Psp6I	CCWGG	1 cut(s)	158
PspGI	CCWGG	1 cut(s)	158
RseI	CAYNNNNRTG	1 cut(s)	11
SatI	GCNGC	2 cut(s)	119, 135
Sau3AI	GATC	1 cut(s)	107
ScrFI	CCNGG	2 cut(s)	49, 160
SduI	GDGCHC	1 cut(s)	169
SetI	ASST	2 cut(s)	82, 198
SfaNI	GCATC	1 cut(s)	163
SmiMI	CAYNNNNRTG	1 cut(s)	11
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
Sse9I	AATT	1 cut(s)	225
SsiI	CCGC	1 cut(s)	62
SspMI	CTAG	1 cut(s)	53
StyD4I	CCNGG	2 cut(s)	47, 158
StyI	CCWWGG	2 cut(s)	138, 177
TaqI	TCGA	1 cut(s)	171
TasI	AATT	1 cut(s)	225
TscAI	CASTG	1 cut(s)	133
TseI	GCWGC	2 cut(s)	118, 134
TspRI	CASTG	1 cut(s)	133
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.