Rorug06G0117700

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000348
Physical Location & Seq
Reverse (-)
16069792 .. 16074114
4323 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0117700.1

Sequence Viewer

Length: 939 bp
ATGTCAGGTATGGAGAGGCTGCAGAGAATGTTCGCCGGTGCCGGAGGAGCTTTGGGCCACCCGCCGCCCGATTCCCCCACCCTCGATTCCTCCGAGCAGGTCTACATCTCCTCCTTGGCGCTCCTCAAAATGCTCAAGCACGGAAGAGCTGGGGTTCCTATGGAGGTCATGGGATTGATGCTGGGAGAGTTTGTGGATGAATACACCGTTCGTGTTGTTGACGTCTTTGCGATGCCGCAGAGTGGTACTGGTGTCAGTGTCGAAGCCGTCGATCATGTCTTCCAGACTAATATGCTTGATATGCTTAAGCAGACCGGACGACCAGAGATGGTAGTTGGGTGGTACCATTCGCATCCTGGATTTGGATGTTGGCTTTCCGGTGTGGACATTAATACCCAGCAGAGCTTTGAAGCTTTGAATCAACGGGCTGTAGCTGTAGTGGTAGATCCAATTCAGAGCGTGAAGGGGAAGGTAGTCATTGATGCATTCCGCCTTATCAACCCACAAACTATGATGCTTGGCCAAGAACCTCGGCAGACCACATCCAATCTCGGGCATCTAAATAAGCCATCAATTCAAGCCTTGATCCATGGGTTAAATCGTCATTATTACTCCATAGCAATTAATTACCGGAAGAATGAACTCGAGGAGAAAATGTTGCTTAACCTTCACAAGAAGAAATGGACAGATGGGCTGACACTAAAGCGATTTGACACTCATTCAAAAACAAATGAGCAAACAGTTCAGGAGATGTTAAATCTAGCTGTTAAATACAACAAGGCAGTGCAGGAGGAGGATGAGCTGCCACCAGAGAAGCTTGCAATTGCAAATGTGGGAAGACAAGATGCTAAGAAGCACCTCGAAGAGCATGTCTCCAACTTAATGTCCTCAAACATTGTCCAGACCTTGGGCACAATGCTTGATACTGTGGTGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

312

Amino Acids

34.81

Weight (kDa)

6.31

Isoelectric Point (pI)

40.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JAB PF01398 30 - 141 9e-35 JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Prok-JAB PF14464 41 - 131 1.6e-06 Prokaryotic homologs of the JAB domain
RPN11_C PF23594 231 - 310 1e-34 26S proteasome regulatory subunit RPN11 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 225
Acc36I ACCTGC 1 cut(s) 88
Acc65I GGTACC 1 cut(s) 342
AccB1I GGYRCC 2 cut(s) 38, 342
AccB7I CCANNNNNTGG 1 cut(s) 907
AccI GTMKAC 1 cut(s) 102
AciI CCGC 4 cut(s) 62, 65, 236, 490
AclWI GGATC 2 cut(s) 440, 580
AcoI YGGCCR 1 cut(s) 520
AcyI GRCGYC 1 cut(s) 222
AfaI GTAC 2 cut(s) 247, 344
AfiI CCNNNNNNNGG 4 cut(s) 242, 362, 552, 907
AflII CTTAAG 1 cut(s) 305
AgsI TTSAA 4 cut(s) 410, 418, 578, 723
AjnI CCWGG 1 cut(s) 355
AluBI AGCT 8 cut(s) 50, 149, 405, 413, 434, 764, 802, 817
AluI AGCT 8 cut(s) 50, 149, 405, 413, 434, 764, 802, 817
Alw26I GTCTC 1 cut(s) 877
AlwI GGATC 2 cut(s) 440, 580
Ama87I CYCGRG 2 cut(s) 551, 644
AoxI GGCC 2 cut(s) 55, 520
ApeKI GCWGC 2 cut(s) 19, 802
ArsI GACNNNNNNTTYG 2 cut(s) 855, 887
AseI ATTAAT 2 cut(s) 390, 624
Asp718I GGTACC 1 cut(s) 342
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 55
AvaI CYCGRG 2 cut(s) 551, 644
BaeGI GKGCMC 1 cut(s) 914
BaeI ACNNNNGTAYC 3 cut(s) 237, 270, 915
BalI TGGCCA 1 cut(s) 522
BanI GGYRCC 2 cut(s) 38, 342
BbsI GAAGAC 2 cut(s) 271, 844
BbvI GCAGC 2 cut(s) 6, 789
BccI CCATC 3 cut(s) 322, 577, 683
BceAI ACGGC 1 cut(s) 251
BciT130I CCWGG 1 cut(s) 357
BcoDI GTCTC 1 cut(s) 877
BfaI CTAG 2 cut(s) 761, 937
BfmI CTRYAG 3 cut(s) 20, 429, 435
BfoI RGCGCY 1 cut(s) 122
BfrI CTTAAG 1 cut(s) 305
BfuAI ACCTGC 1 cut(s) 88
BisI GCNGC 4 cut(s) 20, 65, 236, 803
BlsI GCNGC 4 cut(s) 21, 66, 237, 804
Bme1390I CCNGG 1 cut(s) 357
BmeT110I CYCGRG 2 cut(s) 551, 644
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 3 cut(s) 40, 156, 344
BmrFI CCNGG 1 cut(s) 357
BmsI GCATC 7 cut(s) 168, 222, 361, 472, 504, 565, 835
BpiI GAAGAC 2 cut(s) 271, 844
BplI GAGNNNNNCTC 2 cut(s) 857, 889
BpuEI CTTGAG 1 cut(s) 119
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 4 cut(s) 114, 530, 589, 906
BsaWI WCCGGW 3 cut(s) 314, 377, 630
BsaXI ACNNNNNCTCC 6 cut(s) 95, 125, 177, 207, 641, 671
Bsc4I CCNNNNNNNGG 4 cut(s) 242, 362, 552, 907
Bse118I RCCGGY 1 cut(s) 35
Bse1I ACTGG 1 cut(s) 253
BseBI CCWGG 1 cut(s) 357
BseDI CCNNGG 4 cut(s) 114, 530, 589, 906
BseGI GGATG 5 cut(s) 202, 352, 371, 542, 802
BseLI CCNNNNNNNGG 4 cut(s) 242, 362, 552, 907
BseNI ACTGG 1 cut(s) 253
BseRI GAGGAG 5 cut(s) 60, 100, 113, 662, 806
BseSI GKGCMC 1 cut(s) 914
BseXI GCAGC 2 cut(s) 6, 789
BseYI CCCAGC 3 cut(s) 149, 181, 396
BsgI GTGCAG 1 cut(s) 806
BshFI GGCC 2 cut(s) 57, 522
BshNI GGYRCC 2 cut(s) 38, 342
BsiHKCI CYCGRG 2 cut(s) 551, 644
BsiSI CCGG 5 cut(s) 36, 42, 315, 378, 631
BslI CCNNNNNNNGG 4 cut(s) 242, 362, 552, 907
BsmAI GTCTC 1 cut(s) 877
BsmI GAATGC 1 cut(s) 485
BsnI GGCC 2 cut(s) 57, 522
BsoBI CYCGRG 2 cut(s) 551, 644
Bsp1286I GDGCHC 1 cut(s) 914
Bsp143I GATC 3 cut(s) 271, 445, 585
Bsp19I CCATGG 1 cut(s) 589
BspACI CCGC 4 cut(s) 62, 65, 236, 490
BspANI GGCC 2 cut(s) 57, 522
BspLI GGNNCC 3 cut(s) 40, 156, 344
BspMAI CTGCAG 1 cut(s) 24
BspMI ACCTGC 1 cut(s) 88
BspPI GGATC 2 cut(s) 440, 580
BspQI GCTCTTC 2 cut(s) 139, 858
BspT107I GGYRCC 2 cut(s) 38, 342
BspTI CTTAAG 1 cut(s) 305
BsrFI RCCGGY 1 cut(s) 35
BsrI ACTGG 1 cut(s) 253
BssAI RCCGGY 1 cut(s) 35
BssECI CCNNGG 4 cut(s) 114, 530, 589, 906
BssMI GATC 3 cut(s) 271, 445, 585
BssNI GRCGYC 1 cut(s) 222
BssT1I CCWWGG 3 cut(s) 114, 589, 906
Bst2UI CCWGG 1 cut(s) 357
Bst4CI ACNGT 3 cut(s) 208, 742, 928
Bst6I CTCTTC 2 cut(s) 139, 858
BstACI GRCGYC 1 cut(s) 222
BstAFI CTTAAG 1 cut(s) 305
BstC8I GCNNGC 1 cut(s) 819
BstDEI CTNAG 1 cut(s) 849
BstDSI CCRYGG 1 cut(s) 589
BstF5I GGATG 5 cut(s) 202, 352, 371, 542, 802
BstH2I RGCGCY 1 cut(s) 122
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 3 cut(s) 274, 448, 588
BstMAI GTCTC 1 cut(s) 877
BstMBI GATC 3 cut(s) 271, 445, 585
BstMWI GCNNNNNNNGC 2 cut(s) 47, 301
BstNI CCWGG 1 cut(s) 357
BstNSI RCATGY 1 cut(s) 872
BstSCI CCNGG 1 cut(s) 355
BstSFI CTRYAG 3 cut(s) 20, 429, 435
BstSLI GKGCMC 1 cut(s) 914
BstV1I GCAGC 2 cut(s) 6, 789
BstV2I GAAGAC 2 cut(s) 271, 844
BstX2I RGATCY 1 cut(s) 445
BstYI RGATCY 1 cut(s) 445
BsuRI GGCC 2 cut(s) 57, 522
BtgI CCRYGG 1 cut(s) 589
BtgZI GCGATG 1 cut(s) 245
BtsCI GGATG 5 cut(s) 202, 352, 371, 542, 802
BtsI GCAGTG 1 cut(s) 789
BtsIMutI CAGTG 2 cut(s) 262, 789
BveI ACCTGC 1 cut(s) 88
Cac8I GCNNGC 1 cut(s) 819
CfoI GCGC 1 cut(s) 121
Cfr10I RCCGGY 1 cut(s) 35
Cfr13I GGNCC 1 cut(s) 55
Csp6I GTAC 2 cut(s) 246, 343
CviAII CATG 4 cut(s) 169, 275, 590, 869
CviQI GTAC 2 cut(s) 246, 343
DdeI CTNAG 1 cut(s) 849
DpnI GATC 3 cut(s) 273, 447, 587
DpnII GATC 3 cut(s) 271, 445, 585
EaeI YGGCCR 1 cut(s) 520
Eam1104I CTCTTC 2 cut(s) 139, 858
EarI CTCTTC 2 cut(s) 139, 858
EciI GGCGGA 1 cut(s) 479
Eco130I CCWWGG 3 cut(s) 114, 589, 906
Eco88I CYCGRG 2 cut(s) 551, 644
EcoRII CCWGG 1 cut(s) 355
EcoT14I CCWWGG 3 cut(s) 114, 589, 906
EcoT22I ATGCAT 1 cut(s) 487
ErhI CCWWGG 3 cut(s) 114, 589, 906
FaeI CATG 4 cut(s) 172, 278, 593, 872
FatI CATG 4 cut(s) 168, 274, 589, 868
FauI CCCGC 1 cut(s) 69
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 4 cut(s) 20, 65, 236, 803
FokI GGATG 5 cut(s) 209, 339, 378, 529, 809
Fsp4HI GCNGC 4 cut(s) 20, 65, 236, 803
FspBI CTAG 2 cut(s) 761, 937
GlaI GCGC 1 cut(s) 120
GluI GCNGC 4 cut(s) 20, 65, 236, 803
GsaI CCCAGC 3 cut(s) 153, 185, 400
HaeII RGCGCY 1 cut(s) 122
HaeIII GGCC 2 cut(s) 57, 522
HapII CCGG 5 cut(s) 36, 42, 315, 378, 631
HhaI GCGC 1 cut(s) 121
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 4 cut(s) 172, 278, 593, 872
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HindIII AAGCTT 2 cut(s) 411, 815
HinfI GANTC 3 cut(s) 71, 86, 418
HpaII CCGG 5 cut(s) 36, 42, 315, 378, 631
Hpy166II GTNNAC 3 cut(s) 103, 220, 385
Hpy188I TCNGA 2 cut(s) 94, 456
Hpy188III TCNNGA 3 cut(s) 283, 746, 901
Hpy8I GTNNAC 3 cut(s) 103, 220, 385
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 3 cut(s) 457, 463, 677
HpyCH4III ACNGT 3 cut(s) 208, 742, 928
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 5 cut(s) 22, 485, 787, 821, 827
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 301
HpyF3I CTNAG 1 cut(s) 849
HpySE526I ACGT 1 cut(s) 222
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 4 cut(s) 172, 278, 593, 872
HspAI GCGC 1 cut(s) 119
KpnI GGTACC 1 cut(s) 346
Kzo9I GATC 3 cut(s) 271, 445, 585
LguI GCTCTTC 2 cut(s) 139, 858
LmnI GCTCC 2 cut(s) 47, 126
Lsp1109I GCAGC 2 cut(s) 6, 789
LweI GCATC 7 cut(s) 168, 222, 361, 472, 504, 565, 835
MaeI CTAG 2 cut(s) 761, 937
MaeII ACGT 1 cut(s) 222
MalI GATC 3 cut(s) 273, 447, 587
MboI GATC 3 cut(s) 271, 445, 585
MboII GAAGA 6 cut(s) 156, 271, 646, 688, 849, 875
MfeI CAATTG 1 cut(s) 822
MflI RGATCY 1 cut(s) 445
MhlI GDGCHC 1 cut(s) 914
MlsI TGGCCA 1 cut(s) 522
MluCI AATT 5 cut(s) 450, 573, 621, 625, 822
MluNI TGGCCA 1 cut(s) 522
MmeI TCCRAC 1 cut(s) 900
Mox20I TGGCCA 1 cut(s) 522
Mph1103I ATGCAT 1 cut(s) 487
MscI TGGCCA 1 cut(s) 522
MseI TTAA 8 cut(s) 306, 390, 596, 624, 663, 755, 768, 881
Msp20I TGGCCA 1 cut(s) 522
MspCI CTTAAG 1 cut(s) 305
MspI CCGG 5 cut(s) 36, 42, 315, 378, 631
MspR9I CCNGG 1 cut(s) 357
MunI CAATTG 1 cut(s) 822
Mva1269I GAATGC 1 cut(s) 485
MvaI CCWGG 1 cut(s) 357
MwoI GCNNNNNNNGC 2 cut(s) 47, 301
NcoI CCATGG 1 cut(s) 589
NdeII GATC 3 cut(s) 271, 445, 585
NlaIII CATG 4 cut(s) 172, 278, 593, 872
NlaIV GGNNCC 3 cut(s) 40, 156, 344
NmeAIII GCCGAG 1 cut(s) 511
NsiI ATGCAT 1 cut(s) 487
NspI RCATGY 1 cut(s) 872
PaeR7I CTCGAG 1 cut(s) 644
PciSI GCTCTTC 2 cut(s) 139, 858
PcsI WCGNNNNNNNCGW 2 cut(s) 90, 267
PctI GAATGC 1 cut(s) 485
PfeI GAWTC 3 cut(s) 71, 86, 418
PflMI CCANNNNNTGG 1 cut(s) 907
PfoI TCCNGGA 1 cut(s) 355
PkrI GCNGC 4 cut(s) 21, 66, 237, 804
PshBI ATTAAT 2 cut(s) 390, 624
Psp6I CCWGG 1 cut(s) 355
PspFI CCCAGC 3 cut(s) 149, 181, 396
PspGI CCWGG 1 cut(s) 355
PspN4I GGNNCC 3 cut(s) 40, 156, 344
PspPI GGNCC 1 cut(s) 55
PspXI VCTCGAGB 1 cut(s) 644
PstI CTGCAG 1 cut(s) 24
PsuI RGATCY 1 cut(s) 445
RsaI GTAC 2 cut(s) 247, 344
RsaNI GTAC 2 cut(s) 246, 343
SapI GCTCTTC 2 cut(s) 139, 858
SaqAI TTAA 8 cut(s) 306, 390, 596, 624, 663, 755, 768, 881
SatI GCNGC 4 cut(s) 20, 65, 236, 803
Sau3AI GATC 3 cut(s) 271, 445, 585
Sau96I GGNCC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 357
SduI GDGCHC 1 cut(s) 914
SfaNI GCATC 7 cut(s) 168, 222, 361, 472, 504, 565, 835
SfcI CTRYAG 3 cut(s) 20, 429, 435
Sfr274I CTCGAG 1 cut(s) 644
SgrAI CRCCGGYG 1 cut(s) 35
SlaI CTCGAG 1 cut(s) 644
SmlI CTYRAG 3 cut(s) 134, 305, 644
SmoI CTYRAG 3 cut(s) 134, 305, 644
Sse9I AATT 5 cut(s) 450, 573, 621, 625, 822
SsiI CCGC 4 cut(s) 62, 65, 236, 490
SspMI CTAG 2 cut(s) 761, 937
StyD4I CCNGG 1 cut(s) 355
StyI CCWWGG 3 cut(s) 114, 589, 906
TaaI ACNGT 3 cut(s) 208, 742, 928
TaiI ACGT 1 cut(s) 225
TaqI TCGA 5 cut(s) 84, 261, 270, 645, 861
TasI AATT 5 cut(s) 450, 573, 621, 625, 822
TauI GCSGC 2 cut(s) 67, 238
TfiI GAWTC 3 cut(s) 71, 86, 418
Tru1I TTAA 8 cut(s) 306, 390, 596, 624, 663, 755, 768, 881
Tru9I TTAA 8 cut(s) 306, 390, 596, 624, 663, 755, 768, 881
TscAI CASTG 2 cut(s) 262, 789
TseI GCWGC 2 cut(s) 19, 802
TspDTI ATGAA 2 cut(s) 213, 654
TspGWI ACGGA 1 cut(s) 156
TspRI CASTG 2 cut(s) 262, 789
Van91I CCANNNNNTGG 1 cut(s) 907
Vha464I CTTAAG 1 cut(s) 305
VspI ATTAAT 2 cut(s) 390, 624
XceI RCATGY 1 cut(s) 872
XcmI CCANNNNNNNNNTGG 1 cut(s) 353
XhoI CTCGAG 1 cut(s) 644
XmiI GTMKAC 1 cut(s) 102
XspI CTAG 2 cut(s) 761, 937
ZraI GACGTC 1 cut(s) 223
Zsp2I ATGCAT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.