RchiOBHm_Chr6g0278551

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000348
Physical Location & Seq
Forward (+)
41649548 .. 41652212
2665 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24987

Sequence Viewer

Length: 666 bp
ATGTTGTTTTACTTGTCGAAATGCCAATTTGAGTCGTTCAGACTTTTGAATACAGGAGTGTTGCTTACTCAACCATTTCTGGGCTTCCAGTTTTTGGAATGTCATTTAAGGCCAAAGGAAAAAAATTACCATTCAATCAATCAAGACTGTAAACATTACAAGATTTGCAGAGGAGACCATGAAGTTCGTTGTGTGCAAAGGAAGCTGTTGTTGGAATCCCTTGCAAATGAACTTCCTAGTGGCACAACCAGATTCTCATCAAAATTTGTTTCAATTGAAGAATCAGGCTACTTTAAGTTTCTGCATCTTTGGAAATCCGCTATTAGTGGTCAGGCAAACTTCAAGAGCAATCATGGATTTGATCCCACATCCATGCGGTTCTTCAGGCATGGAGTTAGATCTGGTGTCATCCCTTGTGATAAAAAAGCTGTTTATCGTCCAGCTCAATTGAGGCAATTTGTGTTGAGCAAGCTAGGAAAGATTCCTGATGAAGGGAGCGAAGGAAAGTTGATGACCTTGTTGAACAGAATTCTGGGGCCTTTAATCCCCAAGTTGCTGTTGAAAAAGGCTGATTTTGATTGTGGGAAGCTCAACACCACTTGCATTACTTTCTATTGGTATCTTAGATATGCAATGATTCATGCTTTAAAATTCTGGAATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

221

Amino Acids

25.67

Weight (kDa)

9.64

Isoelectric Point (pI)

29.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 94
AciI CCGC 2 cut(s) 318, 376
AclWI GGATC 1 cut(s) 356
AcsI RAATTY 4 cut(s) 263, 528, 650, 658
AcuI CTGAAG 1 cut(s) 367
AfiI CCNNNNNNNGG 3 cut(s) 80, 94, 491
AgsI TTSAA 7 cut(s) 49, 135, 273, 278, 343, 523, 562
AjuI GAANNNNNNNTTGG 2 cut(s) 194, 226
AluBI AGCT 5 cut(s) 205, 428, 443, 472, 589
AluI AGCT 5 cut(s) 205, 428, 443, 472, 589
Alw26I GTCTC 1 cut(s) 168
AlwI GGATC 1 cut(s) 356
AoxI GGCC 2 cut(s) 110, 536
ApoI RAATTY 4 cut(s) 263, 528, 650, 658
AspS9I GGNCC 1 cut(s) 536
BcoDI GTCTC 1 cut(s) 168
BfaI CTAG 2 cut(s) 237, 473
BglII AGATCT 1 cut(s) 398
BmgT120I GGNCC 1 cut(s) 536
BmiI GGNNCC 1 cut(s) 537
BmsI GCATC 1 cut(s) 313
BsaBI GATNNNNATC 1 cut(s) 256
BsaI GGTCTC 1 cut(s) 168
Bsc4I CCNNNNNNNGG 3 cut(s) 80, 94, 491
Bse1I ACTGG 1 cut(s) 88
Bse3DI GCAATG 1 cut(s) 639
Bse8I GATNNNNATC 1 cut(s) 256
BseGI GGATG 2 cut(s) 368, 408
BseJI GATNNNNATC 1 cut(s) 256
BseLI CCNNNNNNNGG 3 cut(s) 80, 94, 491
BseMI GCAATG 1 cut(s) 639
BseNI ACTGG 1 cut(s) 88
BseRI GAGGAG 1 cut(s) 186
BshFI GGCC 2 cut(s) 112, 538
BslI CCNNNNNNNGG 3 cut(s) 80, 94, 491
BsmAI GTCTC 1 cut(s) 168
BsnI GGCC 2 cut(s) 112, 538
Bso31I GGTCTC 1 cut(s) 168
Bsp143I GATC 2 cut(s) 361, 398
BspACI CCGC 2 cut(s) 318, 376
BspANI GGCC 2 cut(s) 112, 538
BspLI GGNNCC 1 cut(s) 537
BspPI GGATC 1 cut(s) 356
BspTNI GGTCTC 1 cut(s) 168
BsrDI GCAATG 1 cut(s) 639
BsrI ACTGG 1 cut(s) 88
BssMI GATC 2 cut(s) 361, 398
Bst4CI ACNGT 1 cut(s) 149
BstC8I GCNNGC 1 cut(s) 470
BstDEI CTNAG 1 cut(s) 623
BstENI CCTNNNNNAGG 1 cut(s) 489
BstF5I GGATG 2 cut(s) 368, 408
BstKTI GATC 2 cut(s) 364, 401
BstMAI GTCTC 1 cut(s) 168
BstMBI GATC 2 cut(s) 361, 398
BstMWI GCNNNNNNNGC 1 cut(s) 202
BstX2I RGATCY 1 cut(s) 398
BstYI RGATCY 1 cut(s) 398
BsuRI GGCC 2 cut(s) 112, 538
BtsCI GGATG 2 cut(s) 368, 408
Cac8I GCNNGC 1 cut(s) 470
Cfr13I GGNCC 1 cut(s) 536
CviAII CATG 5 cut(s) 179, 353, 373, 389, 641
DdeI CTNAG 1 cut(s) 623
DpnI GATC 2 cut(s) 363, 400
DpnII GATC 2 cut(s) 361, 398
DraI TTTAAA 1 cut(s) 648
Eco31I GGTCTC 1 cut(s) 168
Eco57I CTGAAG 1 cut(s) 367
EcoNI CCTNNNNNAGG 1 cut(s) 489
EcoO109I RGGNCCY 1 cut(s) 536
EcoRI GAATTC 2 cut(s) 528, 658
FaeI CATG 5 cut(s) 182, 356, 376, 392, 644
FaiI YATR 6 cut(s) 180, 354, 374, 390, 630, 642
FatI CATG 5 cut(s) 178, 352, 372, 388, 640
FokI GGATG 2 cut(s) 355, 395
FspBI CTAG 2 cut(s) 237, 473
HaeIII GGCC 2 cut(s) 112, 538
Hin1II CATG 5 cut(s) 182, 356, 376, 392, 644
HinfI GANTC 6 cut(s) 32, 215, 252, 281, 481, 637
Hpy166II GTNNAC 1 cut(s) 152
Hpy188I TCNGA 1 cut(s) 41
Hpy188III TCNNGA 5 cut(s) 143, 343, 485, 655, 663
Hpy8I GTNNAC 1 cut(s) 152
HpyAV CCTTC 2 cut(s) 485, 494
HpyCH4III ACNGT 1 cut(s) 149
HpyCH4V TGCA 6 cut(s) 168, 196, 224, 304, 603, 632
HpyF10VI GCNNNNNNNGC 1 cut(s) 202
HpyF3I CTNAG 1 cut(s) 623
Hsp92II CATG 5 cut(s) 182, 356, 376, 392, 644
Kzo9I GATC 2 cut(s) 361, 398
LmnI GCTCC 1 cut(s) 495
LweI GCATC 1 cut(s) 313
MaeI CTAG 2 cut(s) 237, 473
MalI GATC 2 cut(s) 363, 400
MboI GATC 2 cut(s) 361, 398
MboII GAAGA 2 cut(s) 290, 373
MfeI CAATTG 2 cut(s) 273, 446
MflI RGATCY 1 cut(s) 398
MluCI AATT 9 cut(s) 26, 124, 263, 273, 446, 455, 528, 650, 658
MlyI GAGTC 1 cut(s) 41
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 2 cut(s) 164, 444
MseI TTAA 4 cut(s) 107, 294, 542, 647
MslI CAYNNNNRTG 1 cut(s) 371
MunI CAATTG 2 cut(s) 273, 446
MwoI GCNNNNNNNGC 1 cut(s) 202
NdeII GATC 2 cut(s) 361, 398
NlaIII CATG 5 cut(s) 182, 356, 376, 392, 644
NlaIV GGNNCC 1 cut(s) 537
PfeI GAWTC 5 cut(s) 215, 252, 281, 481, 637
PflMI CCANNNNNTGG 1 cut(s) 94
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
PspN4I GGNNCC 1 cut(s) 537
PspPI GGNCC 1 cut(s) 536
PsuI RGATCY 1 cut(s) 398
RseI CAYNNNNRTG 1 cut(s) 371
SaqAI TTAA 4 cut(s) 107, 294, 542, 647
Sau3AI GATC 2 cut(s) 361, 398
Sau96I GGNCC 1 cut(s) 536
SchI GAGTC 1 cut(s) 41
SetI ASST 6 cut(s) 207, 430, 445, 474, 518, 591
SfaNI GCATC 1 cut(s) 313
SmiMI CAYNNNNRTG 1 cut(s) 371
Sse9I AATT 9 cut(s) 26, 124, 263, 273, 446, 455, 528, 650, 658
SsiI CCGC 2 cut(s) 318, 376
SspMI CTAG 2 cut(s) 237, 473
TaaI ACNGT 1 cut(s) 149
TaqI TCGA 1 cut(s) 17
TasI AATT 9 cut(s) 26, 124, 263, 273, 446, 455, 528, 650, 658
TfiI GAWTC 5 cut(s) 215, 252, 281, 481, 637
Tru1I TTAA 4 cut(s) 107, 294, 542, 647
Tru9I TTAA 4 cut(s) 107, 294, 542, 647
TspDTI ATGAA 4 cut(s) 195, 243, 504, 629
Van91I CCANNNNNTGG 1 cut(s) 94
XagI CCTNNNNNAGG 1 cut(s) 489
XapI RAATTY 4 cut(s) 263, 528, 650, 658
XspI CTAG 2 cut(s) 237, 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.