Rorug06G0117300

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000348
Physical Location & Seq
Reverse (-)
16000870 .. 16001807
938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0117300.1

Sequence Viewer

Length: 573 bp
ATGGCAGATAATGTGTCAGCTACACCTACTATGCGTGAGAATGTACCAGCAACACCAACTATGATAGATAATGCGTTTGCTACCCCTACTGTGCATGAAAATGTGCCAACAACAACTACTGTTCATGCTCATGAGCTTATAAAGGCTAATGGTGGACCTCTACATGTTGACTTTCATCCGACCATCCATGTCCCTTCTGATGACACAATTTCTAAAATGTTTACTTCTGAGATAGGAATTATTGTTCGAGGTGGGGCACCCGTATGTAAATATGGCTGGTCTGATATTGATGAAGAAGATGATAAGAGGTTGCTAAGAGAGGATTTGCGGGTGTTCTTTACGGTGGACTTAACCGATCCAGCTGTTGTTGCGTATGTGGATTCCAAAATGTCTACTGCCTACTCTCAATTCAAGACTCGACTAAAGAAGGAGTGGAAAGCATTTGGCTCACCCGAGCTAGGAAGAGCAAACCTGCCTAGTGCAGATTTATGGAATGAGAGACCTGTCTCACATTGGCACTGGCTTTGTGACAACATATACACCAATCAATCTTACATTGTATGGATTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

190

Amino Acids

21.44

Weight (kDa)

5.51

Isoelectric Point (pI)

41.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 140
Acc36I ACCTGC 1 cut(s) 480
AccB1I GGYRCC 1 cut(s) 256
AccI GTMKAC 1 cut(s) 392
AciI CCGC 1 cut(s) 328
AclWI GGATC 1 cut(s) 350
AfaI GTAC 1 cut(s) 45
AfiI CCNNNNNNNGG 1 cut(s) 458
AflIII ACRYGT 1 cut(s) 163
AgsI TTSAA 1 cut(s) 412
AloI GAACNNNNNNTCC 2 cut(s) 228, 260
AluBI AGCT 4 cut(s) 20, 136, 362, 457
AluI AGCT 4 cut(s) 20, 136, 362, 457
Alw26I GTCTC 2 cut(s) 493, 511
AlwI GGATC 1 cut(s) 350
Ama87I CYCGRG 1 cut(s) 452
AspS9I GGNCC 1 cut(s) 155
AsuHPI GGTGA 1 cut(s) 441
AvaI CYCGRG 1 cut(s) 452
AvaII GGWCC 1 cut(s) 155
BaeGI GKGCMC 1 cut(s) 259
BanI GGYRCC 1 cut(s) 256
BccI CCATC 1 cut(s) 191
BcoDI GTCTC 2 cut(s) 493, 511
BfaI CTAG 2 cut(s) 458, 477
BfuAI ACCTGC 1 cut(s) 480
Bme18I GGWCC 1 cut(s) 155
BmeT110I CYCGRG 1 cut(s) 452
BmgT120I GGNCC 1 cut(s) 155
BmiI GGNNCC 1 cut(s) 258
BsaI GGTCTC 1 cut(s) 493
Bsc4I CCNNNNNNNGG 1 cut(s) 458
Bse1I ACTGG 1 cut(s) 524
BseGI GGATG 2 cut(s) 175, 183
BseLI CCNNNNNNNGG 1 cut(s) 458
BseMII CTCAG 1 cut(s) 219
BseNI ACTGG 1 cut(s) 524
BseSI GKGCMC 1 cut(s) 259
BsgI GTGCAG 1 cut(s) 501
BshNI GGYRCC 1 cut(s) 256
BsiHKCI CYCGRG 1 cut(s) 452
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 458
BsmAI GTCTC 2 cut(s) 493, 511
BsmFI GGGAC 1 cut(s) 176
Bso31I GGTCTC 1 cut(s) 493
BsoBI CYCGRG 1 cut(s) 452
Bsp1286I GDGCHC 1 cut(s) 259
Bsp143I GATC 1 cut(s) 355
BspACI CCGC 1 cut(s) 328
BspCNI CTCAG 1 cut(s) 220
BspHI TCATGA 1 cut(s) 130
BspLI GGNNCC 1 cut(s) 258
BspMI ACCTGC 1 cut(s) 480
BspPI GGATC 1 cut(s) 350
BspQI GCTCTTC 1 cut(s) 457
BspT107I GGYRCC 1 cut(s) 256
BspTNI GGTCTC 1 cut(s) 493
BsrI ACTGG 1 cut(s) 524
BssMI GATC 1 cut(s) 355
Bst4CI ACNGT 3 cut(s) 91, 121, 343
Bst6I CTCTTC 1 cut(s) 457
BstDEI CTNAG 2 cut(s) 228, 314
BstF5I GGATG 2 cut(s) 175, 183
BstKTI GATC 1 cut(s) 358
BstMAI GTCTC 2 cut(s) 493, 511
BstMBI GATC 1 cut(s) 355
BstMWI GCNNNNNNNGC 1 cut(s) 368
BstNSI RCATGY 1 cut(s) 167
BstSLI GKGCMC 1 cut(s) 259
BtsCI GGATG 2 cut(s) 175, 183
BtsIMutI CAGTG 1 cut(s) 517
BveI ACCTGC 1 cut(s) 480
CciI TCATGA 1 cut(s) 130
Cfr13I GGNCC 1 cut(s) 155
Csp6I GTAC 1 cut(s) 44
CviAII CATG 5 cut(s) 95, 125, 131, 164, 188
CviJI RGCY 8 cut(s) 20, 136, 146, 276, 362, 447, 457, 523
CviKI_1 RGCY 8 cut(s) 20, 136, 146, 276, 362, 447, 457, 523
CviQI GTAC 1 cut(s) 44
DdeI CTNAG 2 cut(s) 228, 314
DpnI GATC 1 cut(s) 357
DpnII GATC 1 cut(s) 355
Eam1104I CTCTTC 1 cut(s) 457
EarI CTCTTC 1 cut(s) 457
Eco31I GGTCTC 1 cut(s) 493
Eco47I GGWCC 1 cut(s) 155
Eco88I CYCGRG 1 cut(s) 452
FaeI CATG 5 cut(s) 98, 128, 134, 167, 191
FaqI GGGAC 1 cut(s) 176
FatI CATG 5 cut(s) 94, 124, 130, 163, 187
FauI CCCGC 1 cut(s) 321
FblI GTMKAC 1 cut(s) 392
FokI GGATG 2 cut(s) 162, 170
FspBI CTAG 2 cut(s) 458, 477
Hin1II CATG 5 cut(s) 98, 128, 134, 167, 191
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 3 cut(s) 380, 415, 565
HphI GGTGA 1 cut(s) 441
Hpy166II GTNNAC 5 cut(s) 155, 169, 222, 346, 393
Hpy188I TCNGA 4 cut(s) 180, 199, 229, 283
Hpy188III TCNNGA 2 cut(s) 131, 412
Hpy8I GTNNAC 5 cut(s) 155, 169, 222, 346, 393
HpyAV CCTTC 2 cut(s) 204, 421
HpyCH4III ACNGT 3 cut(s) 91, 121, 343
HpyCH4V TGCA 2 cut(s) 94, 482
HpyF10VI GCNNNNNNNGC 1 cut(s) 368
HpyF3I CTNAG 2 cut(s) 228, 314
Hsp92II CATG 5 cut(s) 98, 128, 134, 167, 191
Kzo9I GATC 1 cut(s) 355
LguI GCTCTTC 1 cut(s) 457
LpnPI CCDG 6 cut(s) 60, 262, 372, 485, 505, 516
MaeI CTAG 2 cut(s) 458, 477
MaeIII GTNAC 1 cut(s) 527
MalI GATC 1 cut(s) 357
MboI GATC 1 cut(s) 355
MboII GAAGA 3 cut(s) 305, 308, 474
MhlI GDGCHC 1 cut(s) 259
MluCI AATT 3 cut(s) 207, 237, 407
MlyI GAGTC 1 cut(s) 409
MmeI TCCRAC 1 cut(s) 203
MnlI CCTC 4 cut(s) 168, 242, 300, 313
MseI TTAA 2 cut(s) 350, 571
MslI CAYNNNNRTG 3 cut(s) 99, 129, 262
MspA1I CMGCKG 1 cut(s) 362
MwoI GCNNNNNNNGC 1 cut(s) 368
NdeII GATC 1 cut(s) 355
NlaIII CATG 5 cut(s) 98, 128, 134, 167, 191
NlaIV GGNNCC 1 cut(s) 258
NmuCI GTSAC 1 cut(s) 527
NspI RCATGY 1 cut(s) 167
PagI TCATGA 1 cut(s) 130
PciI ACATGT 1 cut(s) 163
PciSI GCTCTTC 1 cut(s) 457
PfeI GAWTC 2 cut(s) 380, 565
PleI GAGTC 1 cut(s) 409
PpsI GAGTC 1 cut(s) 409
PscI ACATGT 1 cut(s) 163
PsiI TTATAA 1 cut(s) 140
PspN4I GGNNCC 1 cut(s) 258
PspPI GGNCC 1 cut(s) 155
PvuII CAGCTG 1 cut(s) 362
RsaI GTAC 1 cut(s) 45
RsaNI GTAC 1 cut(s) 44
RseI CAYNNNNRTG 3 cut(s) 99, 129, 262
SapI GCTCTTC 1 cut(s) 457
SaqAI TTAA 2 cut(s) 350, 571
Sau3AI GATC 1 cut(s) 355
Sau96I GGNCC 1 cut(s) 155
SchI GAGTC 1 cut(s) 409
SduI GDGCHC 1 cut(s) 259
SinI GGWCC 1 cut(s) 155
SmiMI CAYNNNNRTG 3 cut(s) 99, 129, 262
Sse9I AATT 3 cut(s) 207, 237, 407
SsiI CCGC 1 cut(s) 328
SspMI CTAG 2 cut(s) 458, 477
TaaI ACNGT 3 cut(s) 91, 121, 343
TaqI TCGA 2 cut(s) 247, 418
TasI AATT 3 cut(s) 207, 237, 407
TfiI GAWTC 2 cut(s) 380, 565
Tru1I TTAA 2 cut(s) 350, 571
Tru9I TTAA 2 cut(s) 350, 571
TscAI CASTG 1 cut(s) 524
TseFI GTSAC 1 cut(s) 527
Tsp45I GTSAC 1 cut(s) 527
TspDTI ATGAA 5 cut(s) 111, 113, 164, 306, 557
TspRI CASTG 1 cut(s) 524
VpaK11BI GGWCC 1 cut(s) 155
XceI RCATGY 1 cut(s) 167
XmiI GTMKAC 1 cut(s) 392
XspI CTAG 2 cut(s) 458, 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.