pycom05g11780

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000348
Physical Location & Seq
Reverse (-)
15343671 .. 15346090
2420 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g11780.1

Sequence Viewer

Length: 1266 bp
ATGGCGTCAATAATACCATCACTCATGGAAGTAGTAGAAGAAAGTGTTGTGATTGTTGGAGCTGGAATTGCTGGTCTTTCTGCAGCCTTGGGGCTTCACAGGCTGGGGATTCGGAGCGTAGTTTTAGAATCGTCGGATAGTTTGAGGACGACCGGGTTTGCTTTAACAACATGGACAAATGCATGGAAGGCCTTGGATGCCCTTGGCATTGGTGATACTCTTCGCCAACAACATGGGGCACTTCGTGGGAATGTGACTTCCTCAACAATTTCTGGGCTTCCTGTGTTTGAGATGTCATTTAAGGCCAAGGGAAAGAACGGAGATCATGAAGTCCGTCGCGTGAAAAGGAGATTGCTTTTGGAAGCCCTTGCAGATGAACTCCCTAGTGGCACCATTAGGTTTTCGTCCAAGGTGGTTTCCATTGACGAATCAGGCTACTTGAAGCTGGTGCATCTTGCTGATGGAACCATCCTCAAGGCCAAGGTCTTAGTTGGGTGTGACGGAGTGAACTCGGTGGTTGCTAAATGGCTAGGGTTCAAGCAGCCGGCGTTTACAGGGAGATCTGCCATCCGAGGCCTTGCCAACTTCAAGAGCGGCCATGGTTTTGATCCCATATTTATGCAGTTCTTTGGAAATGGTATTAGATATGGTGTAATCCCTTGTGATGATAAAACTGTTTATTGGTACTACACTTGGGCTCCTACCAGCCAAGAGAGCGAGCTAGAAGAAAGCCCAGCTCAACTGAAGCAATATATTCTGAGCAACCTTGGAAAGGCACCTGAGAAAGTAAGAGAAGTTATAGAAAGCACTAACTTGGATGCTTTTATATCATCTCCACTGAGATATAGACATCCTTGGGAGCTTCTTTGGGGAAACATTAGCAAAGGCAATGTTTGTGTTGCTGGGGACGCGCTCCACCCCATGACACCAGACATAGGCCAAGGCGGCTGCGCTGCGTTAGAAGACGGGGTTGTGTTAGCAAGGTGTCTTGGTGAGGCCTTGTTGAAACACTCAAGGCGAGAAATAAAAGATGGAGATGAAGGAGTGGAGGAATATTATAAGAGGATTGAGATGGGGTTGAAAAAGTATGCCAATGAAAGGAGATGGAGAGGGTTTGATCTCATTGTCACTGGTTATGTGGTTGGTTTTATGCAGGGGAGTGGAGGAAAAATTATGACATTGTTGAACAAATTTCTGGCTCCAACCCTCGCTTTGTTGCTTTTGAAGAAGGCTGATTTTGATTGTGGGAAACTCATCATGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

422

Amino Acids

46.0

Weight (kDa)

8.73

Isoelectric Point (pI)

34.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 15 - 337 1.1e-26 FAD binding domain
Lycopene_cycl PF05834 16 - 181 4.1e-09 Lycopene cyclase protein
FAD_binding_2 PF00890 16 - 77 1.4e-06 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1059
AccB1I GGYRCC 2 cut(s) 389, 775
AccBSI CCGCTC 1 cut(s) 594
AccII CGCG 2 cut(s) 339, 911
AciI CCGC 2 cut(s) 594, 945
AclWI GGATC 1 cut(s) 602
AcoI YGGCCR 1 cut(s) 595
AcsI RAATTY 1 cut(s) 1190
AcuI CTGAAG 1 cut(s) 764
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 245
AfaI GTAC 1 cut(s) 686
AfiI CCNNNNNNNGG 3 cut(s) 772, 935, 1098
AgsI TTSAA 7 cut(s) 442, 538, 589, 1006, 1081, 1186, 1225
AluBI AGCT 5 cut(s) 62, 445, 721, 737, 862
AluI AGCT 5 cut(s) 62, 445, 721, 737, 862
AlwI GGATC 1 cut(s) 602
AoxI GGCC 7 cut(s) 189, 303, 477, 574, 595, 937, 996
ApeKI GCWGC 4 cut(s) 83, 541, 948, 953
ApoI RAATTY 1 cut(s) 1190
AspLEI GCGC 2 cut(s) 913, 953
AsuC2I CCSGG 1 cut(s) 154
AsuHPI GGTGA 2 cut(s) 224, 1004
BaeGI GKGCMC 1 cut(s) 241
BanI GGYRCC 2 cut(s) 389, 775
BanII GRGCYC 1 cut(s) 700
BbsI GAAGAC 1 cut(s) 969
BbvI GCAGC 4 cut(s) 95, 553, 935, 940
BccI CCATC 7 cut(s) 25, 455, 476, 575, 1025, 1066, 1098
BcnI CCSGG 1 cut(s) 154
BfaI CTAG 3 cut(s) 384, 530, 722
BfmI CTRYAG 1 cut(s) 81
BglI GCCNNNNNGGC 1 cut(s) 945
BglII AGATCT 1 cut(s) 560
BisI GCNGC 6 cut(s) 84, 542, 595, 946, 949, 954
BlsI GCNGC 6 cut(s) 85, 543, 596, 947, 950, 955
Bme1390I CCNGG 1 cut(s) 154
BmiI GGNNCC 5 cut(s) 391, 466, 699, 777, 1200
BmrFI CCNGG 1 cut(s) 154
BmsI GCATC 3 cut(s) 187, 460, 808
BpiI GAAGAC 1 cut(s) 969
BpuEI CTTGAG 2 cut(s) 458, 997
BpuMI CCSGG 1 cut(s) 154
BsaHI GRCGYC 1 cut(s) 5
BsaXI ACNNNNNCTCC 2 cut(s) 682, 712
Bsc4I CCNNNNNNNGG 3 cut(s) 772, 935, 1098
Bse118I RCCGGY 1 cut(s) 544
Bse1I ACTGG 1 cut(s) 1135
Bse3DI GCAATG 1 cut(s) 895
BseGI GGATG 5 cut(s) 202, 468, 567, 823, 850
BseLI CCNNNNNNNGG 3 cut(s) 772, 935, 1098
BseMI GCAATG 1 cut(s) 895
BseMII CTCAG 3 cut(s) 749, 771, 830
BseNI ACTGG 1 cut(s) 1135
BseSI GKGCMC 1 cut(s) 241
BseXI GCAGC 4 cut(s) 95, 553, 935, 940
BseYI CCCAGC 3 cut(s) 103, 733, 902
Bsh1236I CGCG 2 cut(s) 339, 911
Bsh1285I CGRYCG 1 cut(s) 153
BshFI GGCC 7 cut(s) 191, 305, 479, 576, 597, 939, 998
BshNI GGYRCC 2 cut(s) 389, 775
BsiEI CGRYCG 1 cut(s) 153
BsiSI CCGG 2 cut(s) 153, 545
BslFI GGGAC 1 cut(s) 920
BslI CCNNNNNNNGG 3 cut(s) 772, 935, 1098
BsmFI GGGAC 1 cut(s) 920
BsnI GGCC 7 cut(s) 191, 305, 479, 576, 597, 939, 998
Bsp1286I GDGCHC 2 cut(s) 241, 700
Bsp143I GATC 4 cut(s) 322, 560, 607, 1117
Bsp19I CCATGG 1 cut(s) 598
BspACI CCGC 2 cut(s) 594, 945
BspANI GGCC 7 cut(s) 191, 305, 479, 576, 597, 939, 998
BspCNI CTCAG 3 cut(s) 750, 772, 831
BspFNI CGCG 2 cut(s) 339, 911
BspHI TCATGA 1 cut(s) 325
BspLI GGNNCC 5 cut(s) 391, 466, 699, 777, 1200
BspMAI CTGCAG 1 cut(s) 85
BspPI GGATC 1 cut(s) 602
BspT107I GGYRCC 2 cut(s) 389, 775
BsrBI CCGCTC 1 cut(s) 594
BsrDI GCAATG 1 cut(s) 895
BsrFI RCCGGY 1 cut(s) 544
BsrI ACTGG 1 cut(s) 1135
BssAI RCCGGY 1 cut(s) 544
BssMI GATC 4 cut(s) 322, 560, 607, 1117
BssNI GRCGYC 1 cut(s) 5
Bst4CI ACNGT 1 cut(s) 676
Bst6I CTCTTC 1 cut(s) 225
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 2 cut(s) 546, 719
BstDEI CTNAG 4 cut(s) 487, 758, 780, 839
BstDSI CCRYGG 1 cut(s) 598
BstENI CCTNNNNNAGG 1 cut(s) 770
BstF5I GGATG 5 cut(s) 202, 468, 567, 823, 850
BstFNI CGCG 2 cut(s) 339, 911
BstHHI GCGC 2 cut(s) 913, 953
BstKTI GATC 4 cut(s) 325, 563, 610, 1120
BstMBI GATC 4 cut(s) 322, 560, 607, 1117
BstMCI CGRYCG 1 cut(s) 153
BstMWI GCNNNNNNNGC 7 cut(s) 68, 100, 188, 197, 714, 908, 945
BstSCI CCNGG 1 cut(s) 152
BstSFI CTRYAG 1 cut(s) 81
BstSLI GKGCMC 1 cut(s) 241
BstUI CGCG 2 cut(s) 339, 911
BstV1I GCAGC 4 cut(s) 95, 553, 935, 940
BstV2I GAAGAC 1 cut(s) 969
BstX2I RGATCY 1 cut(s) 560
BstXI CCANNNNNNTGG 1 cut(s) 233
BstYI RGATCY 1 cut(s) 560
BsuRI GGCC 7 cut(s) 191, 305, 479, 576, 597, 939, 998
BtgI CCRYGG 1 cut(s) 598
BtsCI GGATG 5 cut(s) 202, 468, 567, 823, 850
BtsIMutI CAGTG 2 cut(s) 836, 1128
Cac8I GCNNGC 2 cut(s) 546, 719
CciI TCATGA 1 cut(s) 325
CfoI GCGC 2 cut(s) 913, 953
Cfr10I RCCGGY 1 cut(s) 544
CseI GACGC 1 cut(s) 917
Csp6I GTAC 1 cut(s) 685
CviAII CATG 8 cut(s) 25, 171, 183, 233, 326, 599, 922, 1258
CviQI GTAC 1 cut(s) 685
DdeI CTNAG 4 cut(s) 487, 758, 780, 839
DpnI GATC 4 cut(s) 324, 562, 609, 1119
DpnII GATC 4 cut(s) 322, 560, 607, 1117
DraIII CACNNNGTG 1 cut(s) 245
EaeI YGGCCR 1 cut(s) 595
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Eco147I AGGCCT 3 cut(s) 191, 576, 998
Eco24I GRGCYC 1 cut(s) 700
Eco57I CTGAAG 1 cut(s) 764
EcoNI CCTNNNNNAGG 1 cut(s) 770
EcoT22I ATGCAT 1 cut(s) 184
EcoT38I GRGCYC 1 cut(s) 700
FaeI CATG 8 cut(s) 28, 174, 186, 236, 329, 602, 925, 1261
FaqI GGGAC 1 cut(s) 920
FatI CATG 8 cut(s) 24, 170, 182, 232, 325, 598, 921, 1257
Fnu4HI GCNGC 6 cut(s) 84, 542, 595, 946, 949, 954
FokI GGATG 5 cut(s) 209, 455, 554, 830, 837
FriOI GRGCYC 1 cut(s) 700
Fsp4HI GCNGC 6 cut(s) 84, 542, 595, 946, 949, 954
FspBI CTAG 3 cut(s) 384, 530, 722
GlaI GCGC 2 cut(s) 912, 952
GluI GCNGC 6 cut(s) 84, 542, 595, 946, 949, 954
GsaI CCCAGC 3 cut(s) 107, 737, 906
HaeIII GGCC 7 cut(s) 191, 305, 479, 576, 597, 939, 998
HapII CCGG 2 cut(s) 153, 545
HgaI GACGC 1 cut(s) 917
HhaI GCGC 2 cut(s) 913, 953
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 8 cut(s) 28, 174, 186, 236, 329, 602, 925, 1261
Hin6I GCGC 2 cut(s) 911, 951
HinP1I GCGC 2 cut(s) 911, 951
HinfI GANTC 3 cut(s) 109, 128, 428
HpaII CCGG 2 cut(s) 153, 545
HphI GGTGA 2 cut(s) 224, 1004
Hpy166II GTNNAC 2 cut(s) 508, 552
Hpy188I TCNGA 4 cut(s) 114, 136, 572, 759
Hpy188III TCNNGA 2 cut(s) 326, 589
Hpy8I GTNNAC 2 cut(s) 508, 552
Hpy99I CGWCG 2 cut(s) 136, 339
HpyAV CCTTC 3 cut(s) 181, 1034, 1222
HpyCH4III ACNGT 1 cut(s) 676
HpyCH4V TGCA 6 cut(s) 83, 182, 371, 451, 622, 1153
HpyF10VI GCNNNNNNNGC 7 cut(s) 68, 100, 188, 197, 714, 908, 945
HpyF3I CTNAG 4 cut(s) 487, 758, 780, 839
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 8 cut(s) 28, 174, 186, 236, 329, 602, 925, 1261
HspAI GCGC 2 cut(s) 911, 951
KroI GCCGGC 1 cut(s) 544
KroNI GCCGGC 1 cut(s) 546
Kzo9I GATC 4 cut(s) 322, 560, 607, 1117
LmnI GCTCC 6 cut(s) 59, 114, 703, 859, 918, 1204
Lsp1109I GCAGC 4 cut(s) 95, 553, 935, 940
LweI GCATC 3 cut(s) 187, 460, 808
MaeI CTAG 3 cut(s) 384, 530, 722
MaeIII GTNAC 3 cut(s) 253, 497, 1126
MalI GATC 4 cut(s) 324, 562, 609, 1119
MbiI CCGCTC 1 cut(s) 594
MboI GATC 4 cut(s) 322, 560, 607, 1117
MboII GAAGA 5 cut(s) 50, 212, 737, 974, 1237
MflI RGATCY 1 cut(s) 560
MhlI GDGCHC 2 cut(s) 241, 700
MluCI AATT 4 cut(s) 66, 267, 1170, 1190
MmeI TCCRAC 3 cut(s) 37, 114, 1226
Mph1103I ATGCAT 1 cut(s) 184
MroNI GCCGGC 1 cut(s) 544
MseI TTAA 3 cut(s) 164, 300, 1264
MslI CAYNNNNRTG 1 cut(s) 617
MspI CCGG 2 cut(s) 153, 545
MspR9I CCNGG 1 cut(s) 154
MvnI CGCG 2 cut(s) 339, 911
MwoI GCNNNNNNNGC 7 cut(s) 68, 100, 188, 197, 714, 908, 945
NaeI GCCGGC 1 cut(s) 546
NciI CCSGG 1 cut(s) 154
NcoI CCATGG 1 cut(s) 598
NdeII GATC 4 cut(s) 322, 560, 607, 1117
NgoMIV GCCGGC 1 cut(s) 544
NlaIII CATG 8 cut(s) 28, 174, 186, 236, 329, 602, 925, 1261
NlaIV GGNNCC 5 cut(s) 391, 466, 699, 777, 1200
NmuCI GTSAC 3 cut(s) 253, 497, 1126
NsiI ATGCAT 1 cut(s) 184
PagI TCATGA 1 cut(s) 325
PceI AGGCCT 3 cut(s) 191, 576, 998
PdiI GCCGGC 1 cut(s) 546
PfeI GAWTC 3 cut(s) 109, 128, 428
PkrI GCNGC 6 cut(s) 85, 543, 596, 947, 950, 955
PsiI TTATAA 1 cut(s) 1059
PspFI CCCAGC 3 cut(s) 103, 733, 902
PspN4I GGNNCC 5 cut(s) 391, 466, 699, 777, 1200
PstI CTGCAG 1 cut(s) 85
PsuI RGATCY 1 cut(s) 560
RsaI GTAC 1 cut(s) 686
RsaNI GTAC 1 cut(s) 685
RseI CAYNNNNRTG 1 cut(s) 617
SaqAI TTAA 3 cut(s) 164, 300, 1264
SatI GCNGC 6 cut(s) 84, 542, 595, 946, 949, 954
Sau3AI GATC 4 cut(s) 322, 560, 607, 1117
ScrFI CCNGG 1 cut(s) 154
SduI GDGCHC 2 cut(s) 241, 700
SfaNI GCATC 3 cut(s) 187, 460, 808
SfcI CTRYAG 1 cut(s) 81
SmiMI CAYNNNNRTG 1 cut(s) 617
SmlI CTYRAG 2 cut(s) 473, 1012
SmoI CTYRAG 2 cut(s) 473, 1012
Sse9I AATT 4 cut(s) 66, 267, 1170, 1190
SseBI AGGCCT 3 cut(s) 191, 576, 998
SsiI CCGC 2 cut(s) 594, 945
SspI AATATT 1 cut(s) 1055
SspMI CTAG 3 cut(s) 384, 530, 722
StuI AGGCCT 3 cut(s) 191, 576, 998
StyD4I CCNGG 1 cut(s) 152
TaaI ACNGT 1 cut(s) 676
TasI AATT 4 cut(s) 66, 267, 1170, 1190
TauI GCSGC 2 cut(s) 597, 948
TfiI GAWTC 3 cut(s) 109, 128, 428
Tru1I TTAA 3 cut(s) 164, 300, 1264
Tru9I TTAA 3 cut(s) 164, 300, 1264
TscAI CASTG 2 cut(s) 843, 1135
TseFI GTSAC 3 cut(s) 253, 497, 1126
TseI GCWGC 4 cut(s) 83, 541, 948, 953
Tsp45I GTSAC 3 cut(s) 253, 497, 1126
TspDTI ATGAA 4 cut(s) 342, 390, 1053, 1110
TspGWI ACGGA 3 cut(s) 323, 333, 516
TspRI CASTG 2 cut(s) 843, 1135
XagI CCTNNNNNAGG 1 cut(s) 770
XapI RAATTY 1 cut(s) 1190
XspI CTAG 3 cut(s) 384, 530, 722
Zsp2I ATGCAT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.