FvH4_7g17841

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000348
Physical Location & Seq
Forward (+)
15034386 .. 15035605
1220 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g17841.t1

Sequence Viewer

Length: 405 bp
ATGTACACCTCTTCCAGCCCAAAACGAGTGTCGCCTAGGCCCTTTAAGACGTTGGTTATAGTCGGGTACTCGGGTACTCGGGAGAAAAATAGAAACCCAGAAAATCAAAATCCACAAGAAATAATAGTGGCTCAGATTGCTCCTTGCTTCACAAGAACTGAGAGCTCAGCTCTTCTATTGATTTTGTGTTTCGAGATTTTCCGGATCAAATTCCGATCTCTCCGTTGCCGGAAGCTATGCCTTCGCCGGCGGGTGTGCGGTGACGATTCCGGTTGGTGTTTCAGTCACGAGCTTTCATCAGCTGCACCATGGAAGGTACTATTTGCTCTCATTTCCAAGTGTTTGAGCTCGTCTGTTACTCTATCTATCTCTCTCGGTTTGGTTGCTGATGCGAAATTAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.01

Weight (kDa)

9.8

Isoelectric Point (pI)

56.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 201
AciI CCGC 2 cut(s) 250, 258
AclWI GGATC 1 cut(s) 212
AcsI RAATTY 1 cut(s) 209
AfaI GTAC 4 cut(s) 5, 68, 76, 318
AluBI AGCT 6 cut(s) 165, 170, 235, 292, 302, 348
AluI AGCT 6 cut(s) 165, 170, 235, 292, 302, 348
Alw21I GWGCWC 2 cut(s) 167, 350
AlwI GGATC 1 cut(s) 212
Ama87I CYCGRG 2 cut(s) 70, 78
Aor13HI TCCGGA 1 cut(s) 201
AoxI GGCC 1 cut(s) 38
ApeKI GCWGC 1 cut(s) 302
ApoI RAATTY 1 cut(s) 209
ArsI GACNNNNNNTTYG 2 cut(s) 14, 46
AspA2I CCTAGG 1 cut(s) 35
AspS9I GGNCC 1 cut(s) 39
AsuHPI GGTGA 1 cut(s) 272
AvaI CYCGRG 2 cut(s) 70, 78
AvrII CCTAGG 1 cut(s) 35
BaeI ACNNNNGTAYC 2 cut(s) 58, 91
BanII GRGCYC 2 cut(s) 167, 350
BauI CACGAG 1 cut(s) 287
Bbv12I GWGCWC 2 cut(s) 167, 350
BbvI GCAGC 1 cut(s) 289
BfaI CTAG 1 cut(s) 36
BisI GCNGC 1 cut(s) 303
BlnI CCTAGG 1 cut(s) 35
BlpI GCTNAGC 1 cut(s) 166
BlsI GCNGC 1 cut(s) 304
BmeT110I CYCGRG 2 cut(s) 70, 78
BmgT120I GGNCC 1 cut(s) 39
BmsI GCATC 1 cut(s) 379
BplI GAGNNNNNCTC 2 cut(s) 154, 186
Bpu1102I GCTNAGC 1 cut(s) 166
BsaJI CCNNGG 2 cut(s) 35, 308
BsaWI WCCGGW 2 cut(s) 201, 269
Bse118I RCCGGY 1 cut(s) 246
BseAI TCCGGA 1 cut(s) 201
BseDI CCNNGG 2 cut(s) 35, 308
BseMII CTCAG 3 cut(s) 146, 150, 180
BseXI GCAGC 1 cut(s) 289
BsgI GTGCAG 1 cut(s) 288
BshFI GGCC 1 cut(s) 40
BsiHKAI GWGCWC 2 cut(s) 167, 350
BsiHKCI CYCGRG 2 cut(s) 70, 78
BsiSI CCGG 4 cut(s) 202, 229, 247, 270
BsnI GGCC 1 cut(s) 40
BsoBI CYCGRG 2 cut(s) 70, 78
Bsp1286I GDGCHC 2 cut(s) 167, 350
Bsp13I TCCGGA 1 cut(s) 201
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 2 cut(s) 204, 215
Bsp1720I GCTNAGC 1 cut(s) 166
Bsp19I CCATGG 1 cut(s) 308
BspACI CCGC 2 cut(s) 250, 258
BspANI GGCC 1 cut(s) 40
BspCNI CTCAG 3 cut(s) 145, 151, 179
BspEI TCCGGA 1 cut(s) 201
BspPI GGATC 1 cut(s) 212
BspQI GCTCTTC 1 cut(s) 177
BsrFI RCCGGY 1 cut(s) 246
BsrGI TGTACA 1 cut(s) 3
BssAI RCCGGY 1 cut(s) 246
BssECI CCNNGG 2 cut(s) 35, 308
BssMI GATC 2 cut(s) 204, 215
BssSI CACGAG 1 cut(s) 287
BssT1I CCWWGG 2 cut(s) 35, 308
Bst2BI CACGAG 1 cut(s) 287
Bst6I CTCTTC 2 cut(s) 16, 177
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 1 cut(s) 248
BstDEI CTNAG 3 cut(s) 132, 159, 166
BstDSI CCRYGG 1 cut(s) 308
BstKTI GATC 2 cut(s) 207, 218
BstMBI GATC 2 cut(s) 204, 215
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstV1I GCAGC 1 cut(s) 289
BsuRI GGCC 1 cut(s) 40
BtgI CCRYGG 1 cut(s) 308
Cac8I GCNNGC 1 cut(s) 248
Cfr10I RCCGGY 1 cut(s) 246
Cfr13I GGNCC 1 cut(s) 39
Csp6I GTAC 4 cut(s) 4, 67, 75, 317
CviAII CATG 1 cut(s) 309
CviJI RGCY 9 cut(s) 18, 40, 131, 165, 170, 235, 292, 302, 348
CviKI_1 RGCY 9 cut(s) 18, 40, 131, 165, 170, 235, 292, 302, 348
CviQI GTAC 4 cut(s) 4, 67, 75, 317
DdeI CTNAG 3 cut(s) 132, 159, 166
DpnI GATC 2 cut(s) 206, 217
DpnII GATC 2 cut(s) 204, 215
Eam1104I CTCTTC 2 cut(s) 16, 177
EarI CTCTTC 2 cut(s) 16, 177
Ecl136II GAGCTC 2 cut(s) 165, 348
Eco130I CCWWGG 2 cut(s) 35, 308
Eco24I GRGCYC 2 cut(s) 167, 350
Eco53kI GAGCTC 2 cut(s) 165, 348
Eco88I CYCGRG 2 cut(s) 70, 78
EcoICRI GAGCTC 2 cut(s) 165, 348
EcoO109I RGGNCCY 1 cut(s) 39
EcoT14I CCWWGG 2 cut(s) 35, 308
EcoT38I GRGCYC 2 cut(s) 167, 350
ErhI CCWWGG 2 cut(s) 35, 308
FaeI CATG 1 cut(s) 312
FaiI YATR 3 cut(s) 59, 238, 310
FatI CATG 1 cut(s) 308
FauI CCCGC 1 cut(s) 243
Fnu4HI GCNGC 1 cut(s) 303
FriOI GRGCYC 2 cut(s) 167, 350
Fsp4HI GCNGC 1 cut(s) 303
FspBI CTAG 1 cut(s) 36
GluI GCNGC 1 cut(s) 303
HaeIII GGCC 1 cut(s) 40
HapII CCGG 4 cut(s) 202, 229, 247, 270
Hin1II CATG 1 cut(s) 312
HinfI GANTC 1 cut(s) 266
HpaII CCGG 4 cut(s) 202, 229, 247, 270
HphI GGTGA 1 cut(s) 272
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 2 cut(s) 135, 215
Hpy188III TCNNGA 4 cut(s) 80, 193, 202, 287
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 2 cut(s) 251, 307
HpyCH4IV ACGT 1 cut(s) 50
HpyCH4V TGCA 1 cut(s) 305
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 3 cut(s) 132, 159, 166
HpySE526I ACGT 1 cut(s) 50
Hsp92II CATG 1 cut(s) 312
Kpn2I TCCGGA 1 cut(s) 201
KroI GCCGGC 1 cut(s) 246
KroNI GCCGGC 1 cut(s) 248
Kzo9I GATC 2 cut(s) 204, 215
LguI GCTCTTC 1 cut(s) 177
LmnI GCTCC 1 cut(s) 145
LpnPI CCDG 6 cut(s) 28, 111, 215, 242, 260, 283
Lsp1109I GCAGC 1 cut(s) 289
LweI GCATC 1 cut(s) 379
MaeI CTAG 1 cut(s) 36
MaeII ACGT 1 cut(s) 50
MaeIII GTNAC 3 cut(s) 260, 284, 355
MalI GATC 2 cut(s) 206, 217
MboI GATC 2 cut(s) 204, 215
MboII GAAGA 2 cut(s) 3, 164
MhlI GDGCHC 2 cut(s) 167, 350
MluCI AATT 2 cut(s) 209, 395
MnlI CCTC 1 cut(s) 19
MreI CGCCGGCG 1 cut(s) 246
MroI TCCGGA 1 cut(s) 201
MroNI GCCGGC 1 cut(s) 246
MseI TTAA 2 cut(s) 45, 398
MspA1I CMGCKG 1 cut(s) 302
MspI CCGG 4 cut(s) 202, 229, 247, 270
MwoI GCNNNNNNNGC 1 cut(s) 137
NaeI GCCGGC 1 cut(s) 248
NcoI CCATGG 1 cut(s) 308
NdeII GATC 2 cut(s) 204, 215
NgoMIV GCCGGC 1 cut(s) 246
NlaIII CATG 1 cut(s) 312
NmuCI GTSAC 2 cut(s) 260, 284
PciSI GCTCTTC 1 cut(s) 177
PdiI GCCGGC 1 cut(s) 248
PfeI GAWTC 1 cut(s) 266
PkrI GCNGC 1 cut(s) 304
Psp124BI GAGCTC 2 cut(s) 167, 350
PspPI GGNCC 1 cut(s) 39
PvuII CAGCTG 1 cut(s) 302
RsaI GTAC 4 cut(s) 5, 68, 76, 318
RsaNI GTAC 4 cut(s) 4, 67, 75, 317
SacI GAGCTC 2 cut(s) 167, 350
SapI GCTCTTC 1 cut(s) 177
SaqAI TTAA 2 cut(s) 45, 398
SatI GCNGC 1 cut(s) 303
Sau3AI GATC 2 cut(s) 204, 215
Sau96I GGNCC 1 cut(s) 39
SduI GDGCHC 2 cut(s) 167, 350
SetI ASST 9 cut(s) 11, 53, 167, 172, 237, 294, 304, 318, 350
SfaNI GCATC 1 cut(s) 379
SgrAI CRCCGGYG 1 cut(s) 246
Sse9I AATT 2 cut(s) 209, 395
SsiI CCGC 2 cut(s) 250, 258
SspMI CTAG 1 cut(s) 36
SstI GAGCTC 2 cut(s) 167, 350
StyI CCWWGG 2 cut(s) 35, 308
TaiI ACGT 1 cut(s) 53
TaqI TCGA 1 cut(s) 192
TasI AATT 2 cut(s) 209, 395
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 1 cut(s) 266
Tru1I TTAA 2 cut(s) 45, 398
Tru9I TTAA 2 cut(s) 45, 398
TseFI GTSAC 2 cut(s) 260, 284
TseI GCWGC 1 cut(s) 302
Tsp45I GTSAC 2 cut(s) 260, 284
TspDTI ATGAA 1 cut(s) 285
TspGWI ACGGA 1 cut(s) 212
XapI RAATTY 1 cut(s) 209
XmaJI CCTAGG 1 cut(s) 35
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.