Rh6BG232300

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000348
Physical Location & Seq
Reverse (-)
43780522 .. 43787597
7076 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG232300.1

Sequence Viewer

Length: 1242 bp
ATGCAAGTAGTAGAGGACGTTGTGATTGTGGGAGCTGGAATTTCTGGCCTCACAACCGCCCTGGGACTTCACAGGCTGGGCATTAGGAGCTTAGTGCTGGAATCTTTTGATAGCTTGAGGATAACAGGGTTTGCACTCACAACATGGACTAATGCGTGGAAGGCTTTAGATGCCATTGGTGTTGGTGATCATTTACGGCAGCAACACCTGGCTCTTCTTGGGAATGTGGTTTTCTCGAGAATTTCAGGGCTTCAGAAGTCTGAAAGGTCACTTAAGGGGAAAGGAAAACATGGAGACCATGAAATTCGTTGTGTGAAAAGGAAGTCGCTGTTAGAAGCCCTTGCGAGTGAACTTCCTAGGGGCACCATTAGGTTCTCTTCAAAGGTTGTTTCCATTGAGGAATCAGGCTACTTTAAGCTGGTGCATCTTGCCGACGGAACCATCCTCAAAGCCAAGGTTTTGATTGGATGTGACGGAGTAAATTCAGTGGTTGCAAAATGGCTGGGCTTCAAGCCTCCGGTCTTTACAGGAAGATCTGCCGTTCGAGGTAGTCCTGAGTTCAAGAGCAGCCATGAGTTTGATCCCATGTTCATGGAGTACTTTGGGAATGGTGTTAGATCTGGTGTAGTTCCTTGTGATGATAAAAATGTTTACTGGTACTTCACTTGGTCTCCCTCCAGCCAAGAGAAAGAGCTAGAAGAAAACCCAGCTCAGTTGAAGCAATGTGTGTTAAGCAAGCTCGGAAAGGTATCAGATGAAGTAAGGGCCGTTGTGGAAAACACTGATTTGGTTGCTTTTATATTCTCTCCATTGAGATATAGGCATCCTTGGGAACTTCTTTGGGGAAATATTAGCAAAGGTAATGTATGTGTAGCTGGAGACGCGCTCCACCCCATGACCCCAGACATTGGACAAGGTGGCTGTGCTGCATTAGAGGACGGTATTGTATTAGCAAGGTGTCTCGGTGAGGCCTTGTTGAAGAATCGGAGCCAAGAAATTAGAGATGAAGGTGAACAAGGAAAAGTGGAATATAAAATGATTGAAAGAGGGTTGAATAAGTATGCCAGTGAGAGGAAATGGAGAAGTTTTGATCTTATTAGTACAGCTTATGTGGTTGGTTTTATACAGGAGGCTGATGGAAAAATAATGACTTTCTTGAGGGACAAGTTTTTCTCTCCAATCCTGGCCGGGTTGCGGTTGAAGAAGGCTGATTATGATTGTGGTAAGCTCAGAAGCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

413

Amino Acids

45.71

Weight (kDa)

8.86

Isoelectric Point (pI)

35.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 6 - 333 7.5e-27 FAD binding domain
Lycopene_cycl PF05834 6 - 164 1.2e-06 Lycopene cyclase protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 362
AccB7I CCANNNNNTGG 1 cut(s) 908
AccII CGCG 1 cut(s) 884
AciI CCGC 2 cut(s) 57, 1195
AclWI GGATC 1 cut(s) 575
AcoI YGGCCR 1 cut(s) 1185
AcsI RAATTY 4 cut(s) 39, 240, 303, 481
AcuI CTGAAG 1 cut(s) 236
AfaI GTAC 3 cut(s) 599, 659, 1102
AfiI CCNNNNNNNGG 3 cut(s) 908, 1071, 1194
AflII CTTAAG 1 cut(s) 272
AgsI TTSAA 8 cut(s) 381, 511, 562, 718, 979, 1043, 1054, 1201
AjnI CCWGG 3 cut(s) 60, 207, 1182
Alw26I GTCTC 4 cut(s) 288, 675, 873, 965
AlwI GGATC 1 cut(s) 575
Ama87I CYCGRG 1 cut(s) 235
AoxI GGCC 4 cut(s) 46, 765, 969, 1185
ApeKI GCWGC 3 cut(s) 199, 567, 926
ApoI RAATTY 4 cut(s) 39, 240, 303, 481
AspA2I CCTAGG 1 cut(s) 356
AspLEI GCGC 1 cut(s) 886
AspS9I GGNCC 1 cut(s) 765
AsuC2I CCSGG 1 cut(s) 1189
AsuHPI GGTGA 3 cut(s) 197, 977, 1022
AvaI CYCGRG 1 cut(s) 235
AvrII CCTAGG 1 cut(s) 356
BaeGI GKGCMC 1 cut(s) 365
BanI GGYRCC 1 cut(s) 362
BbvI GCAGC 3 cut(s) 211, 579, 913
BccI CCATC 2 cut(s) 449, 1130
BceAI ACGGC 3 cut(s) 212, 524, 752
BciT130I CCWGG 3 cut(s) 62, 209, 1184
BclI TGATCA 1 cut(s) 187
BcnI CCSGG 1 cut(s) 1189
BcoDI GTCTC 4 cut(s) 288, 675, 873, 965
BfaI CTAG 2 cut(s) 357, 695
BfrI CTTAAG 1 cut(s) 272
BglII AGATCT 2 cut(s) 533, 617
BisI GCNGC 3 cut(s) 200, 568, 927
BlnI CCTAGG 1 cut(s) 356
BlsI GCNGC 3 cut(s) 201, 569, 928
BmcAI AGTACT 1 cut(s) 599
Bme1390I CCNGG 4 cut(s) 62, 209, 1184, 1189
BmeT110I CYCGRG 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 765
BmiI GGNNCC 3 cut(s) 364, 439, 989
BmrFI CCNGG 4 cut(s) 62, 209, 1184, 1189
BmsI GCATC 3 cut(s) 160, 433, 832
BplI GAGNNNNNCTC 2 cut(s) 870, 902
BpmI CTGGAG 2 cut(s) 661, 897
BpuEI CTTGAG 2 cut(s) 136, 1177
BpuMI CCSGG 1 cut(s) 1189
BsaI GGTCTC 2 cut(s) 288, 675
BsaJI CCNNGG 5 cut(s) 60, 61, 356, 453, 827
BsaWI WCCGGW 1 cut(s) 517
BsaXI ACNNNNNCTCC 2 cut(s) 655, 685
Bsc4I CCNNNNNNNGG 3 cut(s) 908, 1071, 1194
Bse1I ACTGG 2 cut(s) 659, 1065
Bse3DI GCAATG 1 cut(s) 728
BseBI CCWGG 3 cut(s) 62, 209, 1184
BseDI CCNNGG 5 cut(s) 60, 61, 356, 453, 827
BseGI GGATG 3 cut(s) 441, 473, 823
BseLI CCNNNNNNNGG 3 cut(s) 908, 1071, 1194
BseMI GCAATG 1 cut(s) 728
BseMII CTCAG 2 cut(s) 546, 725
BseNI ACTGG 2 cut(s) 659, 1065
BseSI GKGCMC 1 cut(s) 365
BseXI GCAGC 3 cut(s) 211, 579, 913
BseYI CCCAGC 3 cut(s) 76, 502, 706
Bsh1236I CGCG 1 cut(s) 884
BshFI GGCC 4 cut(s) 48, 767, 971, 1187
BshNI GGYRCC 1 cut(s) 362
BsiHKCI CYCGRG 1 cut(s) 235
BsiSI CCGG 2 cut(s) 518, 1188
BslFI GGGAC 2 cut(s) 78, 1175
BslI CCNNNNNNNGG 3 cut(s) 908, 1071, 1194
BsmAI GTCTC 4 cut(s) 288, 675, 873, 965
BsmBI CGTCTC 1 cut(s) 873
BsmFI GGGAC 2 cut(s) 78, 1175
BsnI GGCC 4 cut(s) 48, 767, 971, 1187
Bso31I GGTCTC 2 cut(s) 288, 675
BsoBI CYCGRG 1 cut(s) 235
Bsp1286I GDGCHC 1 cut(s) 365
Bsp143I GATC 5 cut(s) 187, 533, 580, 617, 1090
BspACI CCGC 2 cut(s) 57, 1195
BspANI GGCC 4 cut(s) 48, 767, 971, 1187
BspCNI CTCAG 3 cut(s) 547, 724, 1242
BspFNI CGCG 1 cut(s) 884
BspLI GGNNCC 3 cut(s) 364, 439, 989
BspPI GGATC 1 cut(s) 575
BspQI GCTCTTC 1 cut(s) 219
BspT107I GGYRCC 1 cut(s) 362
BspTI CTTAAG 1 cut(s) 272
BspTNI GGTCTC 2 cut(s) 288, 675
BsrDI GCAATG 1 cut(s) 728
BsrI ACTGG 2 cut(s) 659, 1065
BssECI CCNNGG 5 cut(s) 60, 61, 356, 453, 827
BssMI GATC 5 cut(s) 187, 533, 580, 617, 1090
BssT1I CCWWGG 3 cut(s) 356, 453, 827
Bst2UI CCWGG 3 cut(s) 62, 209, 1184
Bst4CI ACNGT 1 cut(s) 941
Bst6I CTCTTC 2 cut(s) 219, 382
BstAFI CTTAAG 1 cut(s) 272
BstC8I GCNNGC 1 cut(s) 737
BstDEI CTNAG 4 cut(s) 91, 555, 711, 1229
BstF5I GGATG 3 cut(s) 441, 473, 823
BstFNI CGCG 1 cut(s) 884
BstHHI GCGC 1 cut(s) 886
BstKTI GATC 5 cut(s) 190, 536, 583, 620, 1093
BstMAI GTCTC 4 cut(s) 288, 675, 873, 965
BstMBI GATC 5 cut(s) 187, 533, 580, 617, 1090
BstMWI GCNNNNNNNGC 4 cut(s) 87, 161, 170, 881
BstNI CCWGG 3 cut(s) 62, 209, 1184
BstSCI CCNGG 4 cut(s) 60, 207, 1182, 1187
BstSLI GKGCMC 1 cut(s) 365
BstUI CGCG 1 cut(s) 884
BstV1I GCAGC 3 cut(s) 211, 579, 913
BstX2I RGATCY 2 cut(s) 533, 617
BstXI CCANNNNNNTGG 1 cut(s) 592
BstYI RGATCY 2 cut(s) 533, 617
BsuRI GGCC 4 cut(s) 48, 767, 971, 1187
BtsCI GGATG 3 cut(s) 441, 473, 823
BtsIMutI CAGTG 3 cut(s) 492, 780, 1072
Cac8I GCNNGC 1 cut(s) 737
CfoI GCGC 1 cut(s) 886
Cfr13I GGNCC 1 cut(s) 765
CseI GACGC 1 cut(s) 890
Csp6I GTAC 3 cut(s) 598, 658, 1101
CviAII CATG 7 cut(s) 144, 290, 299, 572, 586, 592, 895
CviQI GTAC 3 cut(s) 598, 658, 1101
DdeI CTNAG 4 cut(s) 91, 555, 711, 1229
DpnI GATC 5 cut(s) 189, 535, 582, 619, 1092
DpnII GATC 5 cut(s) 187, 533, 580, 617, 1090
EaeI YGGCCR 1 cut(s) 1185
Eam1104I CTCTTC 2 cut(s) 219, 382
EarI CTCTTC 2 cut(s) 219, 382
Eco130I CCWWGG 3 cut(s) 356, 453, 827
Eco147I AGGCCT 1 cut(s) 971
Eco31I GGTCTC 2 cut(s) 288, 675
Eco57I CTGAAG 1 cut(s) 236
Eco88I CYCGRG 1 cut(s) 235
EcoRII CCWGG 3 cut(s) 60, 207, 1182
EcoT14I CCWWGG 3 cut(s) 356, 453, 827
ErhI CCWWGG 3 cut(s) 356, 453, 827
Esp3I CGTCTC 1 cut(s) 873
FaeI CATG 7 cut(s) 147, 293, 302, 575, 589, 595, 898
FaqI GGGAC 2 cut(s) 78, 1175
FatI CATG 7 cut(s) 143, 289, 298, 571, 585, 591, 894
FbaI TGATCA 1 cut(s) 187
Fnu4HI GCNGC 3 cut(s) 200, 568, 927
FokI GGATG 3 cut(s) 428, 480, 810
Fsp4HI GCNGC 3 cut(s) 200, 568, 927
FspBI CTAG 2 cut(s) 357, 695
GlaI GCGC 1 cut(s) 885
GluI GCNGC 3 cut(s) 200, 568, 927
GsaI CCCAGC 3 cut(s) 80, 506, 710
GsuI CTGGAG 2 cut(s) 661, 897
HaeIII GGCC 4 cut(s) 48, 767, 971, 1187
HapII CCGG 2 cut(s) 518, 1188
HgaI GACGC 1 cut(s) 890
HhaI GCGC 1 cut(s) 886
Hin1II CATG 7 cut(s) 147, 293, 302, 575, 589, 595, 898
Hin6I GCGC 1 cut(s) 884
HinP1I GCGC 1 cut(s) 884
HinfI GANTC 3 cut(s) 101, 401, 982
HpaII CCGG 2 cut(s) 518, 1188
HphI GGTGA 3 cut(s) 197, 977, 1022
Hpy166II GTNNAC 3 cut(s) 350, 652, 1013
Hpy188I TCNGA 6 cut(s) 255, 262, 743, 754, 987, 1232
Hpy188III TCNNGA 5 cut(s) 235, 237, 554, 562, 1156
Hpy8I GTNNAC 3 cut(s) 350, 652, 1013
Hpy99I CGWCG 1 cut(s) 437
HpyAV CCTTC 3 cut(s) 154, 1001, 1198
HpyCH4III ACNGT 1 cut(s) 941
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 5 cut(s) 4, 134, 424, 494, 929
HpyF10VI GCNNNNNNNGC 4 cut(s) 87, 161, 170, 881
HpyF3I CTNAG 4 cut(s) 91, 555, 711, 1229
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 7 cut(s) 147, 293, 302, 575, 589, 595, 898
HspAI GCGC 1 cut(s) 884
Ksp22I TGATCA 1 cut(s) 187
Kzo9I GATC 5 cut(s) 187, 533, 580, 617, 1090
LguI GCTCTTC 1 cut(s) 219
LmnI GCTCC 4 cut(s) 32, 87, 891, 987
Lsp1109I GCAGC 3 cut(s) 211, 579, 913
LweI GCATC 3 cut(s) 160, 433, 832
MaeI CTAG 2 cut(s) 357, 695
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 2 cut(s) 267, 470
MalI GATC 5 cut(s) 189, 535, 582, 619, 1092
MboI GATC 5 cut(s) 187, 533, 580, 617, 1090
MboII GAAGA 6 cut(s) 206, 369, 543, 710, 991, 1213
MflI RGATCY 2 cut(s) 533, 617
MhlI GDGCHC 1 cut(s) 365
MluCI AATT 5 cut(s) 39, 240, 303, 481, 996
MseI TTAA 4 cut(s) 273, 414, 731, 1240
MslI CAYNNNNRTG 1 cut(s) 590
MspCI CTTAAG 1 cut(s) 272
MspI CCGG 2 cut(s) 518, 1188
MspR9I CCNGG 4 cut(s) 62, 209, 1184, 1189
MvaI CCWGG 3 cut(s) 62, 209, 1184
MvnI CGCG 1 cut(s) 884
MwoI GCNNNNNNNGC 4 cut(s) 87, 161, 170, 881
NciI CCSGG 1 cut(s) 1189
NdeII GATC 5 cut(s) 187, 533, 580, 617, 1090
NlaIII CATG 7 cut(s) 147, 293, 302, 575, 589, 595, 898
NlaIV GGNNCC 3 cut(s) 364, 439, 989
NmuCI GTSAC 2 cut(s) 267, 470
PaeR7I CTCGAG 1 cut(s) 235
PasI CCCWGGG 1 cut(s) 61
PceI AGGCCT 1 cut(s) 971
PciSI GCTCTTC 1 cut(s) 219
PfeI GAWTC 3 cut(s) 101, 401, 982
PflMI CCANNNNNTGG 1 cut(s) 908
PkrI GCNGC 3 cut(s) 201, 569, 928
Psp6I CCWGG 3 cut(s) 60, 207, 1182
PspFI CCCAGC 3 cut(s) 76, 502, 706
PspGI CCWGG 3 cut(s) 60, 207, 1182
PspN4I GGNNCC 3 cut(s) 364, 439, 989
PspPI GGNCC 1 cut(s) 765
PsuI RGATCY 2 cut(s) 533, 617
RsaI GTAC 3 cut(s) 599, 659, 1102
RsaNI GTAC 3 cut(s) 598, 658, 1101
RseI CAYNNNNRTG 1 cut(s) 590
SapI GCTCTTC 1 cut(s) 219
SaqAI TTAA 4 cut(s) 273, 414, 731, 1240
SatI GCNGC 3 cut(s) 200, 568, 927
Sau3AI GATC 5 cut(s) 187, 533, 580, 617, 1090
Sau96I GGNCC 1 cut(s) 765
ScaI AGTACT 1 cut(s) 599
ScrFI CCNGG 4 cut(s) 62, 209, 1184, 1189
SduI GDGCHC 1 cut(s) 365
SfaNI GCATC 3 cut(s) 160, 433, 832
Sfr274I CTCGAG 1 cut(s) 235
SlaI CTCGAG 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 590
SmlI CTYRAG 4 cut(s) 115, 235, 272, 1156
SmoI CTYRAG 4 cut(s) 115, 235, 272, 1156
Sse9I AATT 5 cut(s) 39, 240, 303, 481, 996
SseBI AGGCCT 1 cut(s) 971
SsiI CCGC 2 cut(s) 57, 1195
SspI AATATT 1 cut(s) 850
SspMI CTAG 2 cut(s) 357, 695
StuI AGGCCT 1 cut(s) 971
StyD4I CCNGG 4 cut(s) 60, 207, 1182, 1187
StyI CCWWGG 3 cut(s) 356, 453, 827
TaaI ACNGT 1 cut(s) 941
TaiI ACGT 1 cut(s) 21
TaqI TCGA 2 cut(s) 236, 544
TasI AATT 5 cut(s) 39, 240, 303, 481, 996
TatI WGTACW 2 cut(s) 597, 1100
TfiI GAWTC 3 cut(s) 101, 401, 982
Tru1I TTAA 4 cut(s) 273, 414, 731, 1240
Tru9I TTAA 4 cut(s) 273, 414, 731, 1240
TscAI CASTG 3 cut(s) 492, 787, 1072
TseFI GTSAC 2 cut(s) 267, 470
TseI GCWGC 3 cut(s) 199, 567, 926
Tsp45I GTSAC 2 cut(s) 267, 470
TspDTI ATGAA 4 cut(s) 315, 580, 771, 1020
TspGWI ACGGA 2 cut(s) 450, 489
TspRI CASTG 3 cut(s) 492, 787, 1072
Van91I CCANNNNNTGG 1 cut(s) 908
Vha464I CTTAAG 1 cut(s) 272
XapI RAATTY 4 cut(s) 39, 240, 303, 481
XhoI CTCGAG 1 cut(s) 235
XmaJI CCTAGG 1 cut(s) 356
XspI CTAG 2 cut(s) 357, 695
ZrmI AGTACT 1 cut(s) 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.