Rorug06G0117400

Zeaxanthin epoxidase, chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
16034181 .. 16054190
20010 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0117400.1

Sequence Viewer

Length: 3123 bp
ATGAATTCATTGGCCTCTCAATTTGGAGCCTCCTCCTCTTCTTCTTCCACCCATTCGTGGACATATGATGTGTTTTTGAGCTTTAGAGGGAAGGATACACGCTACAATTTTACAGACCACTTGCATAGCAATTTGGTTCAAAAGGGAATTAAAACCTTTATAGATGACGAGCTCACCAGAGGAGAAGAGATATCACCAGCACTTCTCAAAGCAATTGAGGAGTCGAGGATTTCTATCATTGTATTCTCTGCAAATTACGCAGCCTCAAAGTGGTGTTTGGATGAACTGGTTCATATTCTTGAATGTAGAAGATCAAAGAAACAAATGGTTCGGCCAATTTTTTACAAAGTGGATCCCTCAAACGTAAGAAACCAAAGAGGTAGTTTTGGTGATGCACTAGCCAATCATGAAAGCAATTTTAAAGGTAACAGGGAAAGAATAGCGAGATGGAGGGCAGCTCTTTCACAAGCAGCAAATTTGTCAGGGTGGACTTTTCAGGACGGGTATGAAGCAAAATTTATTCATAAAATTGTTGATGATATTTCGGCTCAAGTATTAAAACATACCGATTTAAATGTGGCAAAATACCCTGTTGGGATAGAGTCTCGCGTAGATGATGTGCTCAGACTACTAGATGTTCAGGAAAGTAATGTTCGCATGGTAGGGATATGGGGAATTGGTGGAATAGGCAAGACAACTATTGCTAAAGCTGTTTACAATTTAATTGCCCATAAGTTTGAAGTTGGCTGTTTTTTAACAAATGTCAGAGAACGATCATTATCATACAAAGGTCTAGTAAACCTACAAAATATTCTTCTTTCTAAGATTCCTGGGGCTAACGGATTGATTAGTGTGACCAATACTGATAGAGGAATTAGTGTAATTAAGAAAAGATTTAGCCAGAAAAGAGTTCTTTTAGTTCTTGATGATGTGAATCATATAGACCAATTGAACGCATTAGCTGGGGAGTCTAGTTGGTTTGGTTCACATAGTAGAATTATCATAACAACAAGAGATAAGCATTTCCTATCAGGTCATCTAATATATCAAGTCAAGGAATTAAATTATGAAGAAGGTTTAGAGCTCTTCAATTTTCATGCCTTCAGAGGAGATAGACGTGTGGAACAGTGCAGAAAACTTGCAGATAAGATAACACTCTATGCTAGAGGGCTTCCTTTAGCTTTGGTCGTGTTGGGTTCACATATGTCTAGTATCAGTAAAGATCATTGGCAAGAGCCATTAAATAGTTACATAAGTACTGTTCCTAATCAAGAGATTCAAGAAATTCTCAAAATAAGTTATGATGCACTGGGAGATTTAACTAAAGAAATTTTCCTTCACATTGCTTGTTTCTTTAAAGGTAGAAATAAAAATGATGTGATAGCAATACTAGAAAGTTGTGATCTCTGTCCTAAATATGGTATAGAGGTACTCATAGAGAAGGCCTTCATATCTATTACTGAAGCAAATGATATATGGATGCATGATCGGCTAGAAGAAATGGGTAAAGAAATAGTTCGTCAAGAATCACCAATTGAGCCTGGCAAACGTAGCAGATTGTGGTCTTATGAGGATATTTACCATGTTTTTGAGGAAAATACAGGAACAAATAAAGTTAAAGGCATTATGGTGAAAAATTGTGGATCGGAACATATATGCTTGAGAGGTGAAAGCTTCTCAAAGTTGAAAAATCTTCAACTGTTGATGATCTATGAAGATATTTTTCGCGGAGATCATGTGGATTATATTTCCAAGGAGTTGAGGTTCTTTGAGTGGAAAAGGTGTCCCTTACGGTCTTTCCCATCTATTGATCCGAAGAAACTTGTTTTGCTTAAGATGGATTGGAGTCACACATCACTCGGGGAGGGACTGAAGATGCTAAATTTAATATCTATGGATTTGTCATGGTGTGGTCTCACAAAAATTCCCAACTTATCTGGACTTCCAAACTTAGTGGACTTGATTCTTAAATGGTGTATAAATTTAGTTGAAGTTCATCCTTCGGTTGGATTTCTTGATAAGCTGGTTAAGTTGGACCTGGAGGGATGCCAATTCCTTACTGTTCTCCCAGGAAGAATCAATTTGAAATCTTTGGAAACTCTTAGCCTGCGGTATTGCCATAGGCTTGAGAACTTTCCTGAAATCTTGGGAGAGATGAAGTCCTTAAAATGTCTTGATCTAGCGGAGACTGCCATCAAAGCATTGCCATCATCAATCCGATATCTCATTAATCTCGAAAGGCTAAACTTAAGAGCATGTGGAAATCTTACAAATGTACCATGCATCATATATGAGTTGCAACATCTACAGTGTCTTGATCTCCAGTATTGCCAAAAATTGGTTACATTTCCAAGCAAGTCTGAATCACTTCCTTCCTTGACTTCAACCAAATCAATGAACTTGTATAATTGTCAGAGACTGTGCGATAATGTGTCTCGTGACATGGCAAAGATGAAAACGAATCTAGTGAAGGATGATGACCAGAAGTCTGAATTCCAGGTTGTATTTTCTGGAAGTCAAGTTCCAAAGTGGTTCAGTTGCCGTAAGGATTTCAGTGATCCAGACTACACCTTCACATGTAAGTTTTGTATTGAACTCCCTCGAAATTTCAAATGGGAAAACAAAGGATTGGCACTTTGTATTGCTGCTGAAACATCTTTAGATGTAACTAGAATCATACGTGCAATCCACATCAATGAAAAATTGATTTACCGCAATCCTAATTCAGAAGACGTCCCTGATCTTCTTCAGATGTCGGCTCATGTGTGGGTATACTACATCACATTCCTTACAATAATAAGGAGGCTCAGTGAGAGTGGGTTACCGCCACCATATATGTGTCGAATCAGGTTTGAATTTGAATATTATGATGTGGTGGGAAGCTGTGGGGTTCATGTAGTAATGCCACAACATGAAGATGTGTCTATGGAGCTATTGGTCCATGAAGTTGATGATGAGCACTCCAGCTTCAGTGATGAAGACTTTGAAGACGAGGAATTGATCTCAGAAGATGAAGACTTGAGAAATGTGTACTTGTCTCAAAATGATGACCATCATCACCAGAAATCAATGAATCCTCGAAAGCGGAAGGTCAACTGGGTTGAACCAAATTCTTGTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1040

Amino Acids

119.31

Weight (kDa)

6.51

Isoelectric Point (pI)

42.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 22 - 189 1.8e-56 TIR domain
TIR_2 PF13676 24 - 119 3.4e-14 TIR domain
NB-ARC PF00931 201 - 370 2.3e-15 NB-ARC domain
WHD_ROQ1 PF23282 442 - 510 1.2e-17 Disease resistance protein Roq1-like, winged-helix domain
LRR_13 PF23286 695 - 780 2.6e-08 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 716 - 818 5.5e-09 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 2736
AccB7I CCANNNNNTGG 1 cut(s) 2338
AccI GTMKAC 1 cut(s) 2772
AccII CGCG 2 cut(s) 609, 1728
AciI CCGC 6 cut(s) 1728, 2110, 2183, 2713, 2825, 3085
AclWI GGATC 5 cut(s) 347, 360, 1651, 1805, 2552
AcoI YGGCCR 1 cut(s) 332
AcuI CTGAAG 5 cut(s) 1087, 1482, 1892, 2732, 2953
AcyI GRCGYC 1 cut(s) 2733
AfaI GTAC 4 cut(s) 1258, 1431, 2277, 3032
AfiI CCNNNNNNNGG 5 cut(s) 57, 270, 1418, 2006, 2338
AflII CTTAAG 2 cut(s) 1832, 2248
AflIII ACRYGT 2 cut(s) 1117, 2576
AhdI GACNNNNNGTC 1 cut(s) 2485
AjiI CACGTC 1 cut(s) 1118
AjnI CCWGG 5 cut(s) 829, 1540, 2037, 2068, 2496
AloI GAACNNNNNNTCC 4 cut(s) 1748, 1780, 2505, 2537
Alw21I GWGCWC 4 cut(s) 174, 624, 1086, 2961
Alw26I GTCTC 6 cut(s) 609, 1919, 2180, 2410, 2439, 3042
AlwI GGATC 5 cut(s) 347, 360, 1651, 1805, 2552
AlwNI CAGNNNCTG 1 cut(s) 2419
Ama87I CYCGRG 1 cut(s) 1859
AoxI GGCC 3 cut(s) 12, 332, 1443
ApeKI GCWGC 4 cut(s) 260, 455, 470, 2645
AseI ATTAAT 1 cut(s) 2229
Asp700I GAANNNNTTC 4 cut(s) 288, 1445, 1515, 2367
AspS9I GGNCC 2 cut(s) 2035, 2938
AsuHPI GGTGA 7 cut(s) 166, 186, 401, 1521, 1642, 1679, 3050
AvaI CYCGRG 1 cut(s) 1859
AvaII GGWCC 2 cut(s) 2035, 2938
BaeI ACNNNNGTAYC 2 cut(s) 2259, 2292
BamHI GGATCC 1 cut(s) 352
BanII GRGCYC 2 cut(s) 174, 1086
BauI CACGAG 1 cut(s) 2436
BbsI GAAGAC 4 cut(s) 2736, 2985, 2994, 3021
Bbv12I GWGCWC 4 cut(s) 174, 624, 1086, 2961
BbvI GCAGC 4 cut(s) 272, 467, 482, 2632
BccI CCATC 6 cut(s) 441, 1810, 1831, 2201, 2215, 3060
BceAI ACGGC 1 cut(s) 2526
BciT130I CCWGG 5 cut(s) 831, 1542, 2039, 2070, 2498
BciVI GTATCC 1 cut(s) 88
BcoDI GTCTC 6 cut(s) 609, 1919, 2180, 2410, 2439, 3042
BfmI CTRYAG 1 cut(s) 2306
BfrI CTTAAG 2 cut(s) 1832, 2248
BfuI GTATCC 1 cut(s) 88
BisI GCNGC 4 cut(s) 261, 456, 471, 2646
BlsI GCNGC 4 cut(s) 262, 457, 472, 2647
BmcAI AGTACT 1 cut(s) 1258
Bme1390I CCNGG 5 cut(s) 831, 1542, 2039, 2070, 2498
Bme18I GGWCC 2 cut(s) 2035, 2938
BmeRI GACNNNNNGTC 1 cut(s) 2485
BmeT110I CYCGRG 1 cut(s) 1859
BmgBI CACGTC 1 cut(s) 1118
BmgT120I GGNCC 2 cut(s) 2035, 2938
BmiI GGNNCC 2 cut(s) 28, 354
BmrFI CCNGG 5 cut(s) 831, 1542, 2039, 2070, 2498
BmrI ACTGGG 2 cut(s) 1319, 3106
BmsI GCATC 6 cut(s) 382, 1294, 1470, 1866, 2036, 2292
BmuI ACTGGG 2 cut(s) 1319, 3106
BpiI GAAGAC 4 cut(s) 2736, 2985, 2994, 3021
BplI GAGNNNNNCTC 2 cut(s) 442, 474
BpmI CTGGAG 3 cut(s) 2060, 2306, 2947
BpuEI CTTGAG 4 cut(s) 534, 1681, 2147, 3040
BsaAI YACGTR 1 cut(s) 2681
BsaBI GATNNNNATC 4 cut(s) 233, 778, 933, 3051
BsaHI GRCGYC 1 cut(s) 2733
BsaI GGTCTC 1 cut(s) 1919
BsaJI CCNNGG 3 cut(s) 830, 1752, 2068
BsaXI ACNNNNNCTCC 6 cut(s) 1722, 1748, 1752, 1778, 2794, 2824
Bsc4I CCNNNNNNNGG 5 cut(s) 57, 270, 1418, 2006, 2338
Bse1I ACTGG 4 cut(s) 291, 1314, 2323, 3101
Bse3DI GCAATG 2 cut(s) 1341, 2201
Bse8I GATNNNNATC 4 cut(s) 233, 778, 933, 3051
BseBI CCWGG 5 cut(s) 831, 1542, 2039, 2070, 2498
BseDI CCNNGG 3 cut(s) 830, 1752, 2068
BseGI GGATG 5 cut(s) 286, 1485, 1996, 2051, 2479
BseJI GATNNNNATC 4 cut(s) 233, 778, 933, 3051
BseLI CCNNNNNNNGG 5 cut(s) 57, 270, 1418, 2006, 2338
BseMI GCAATG 2 cut(s) 1341, 2201
BseMII CTCAG 3 cut(s) 637, 2821, 3018
BseNI ACTGG 4 cut(s) 291, 1314, 2323, 3101
BseRI GAGGAG 5 cut(s) 22, 25, 195, 233, 1122
BseXI GCAGC 4 cut(s) 272, 467, 482, 2632
BseYI CCCAGC 1 cut(s) 962
BsgI GTGCAG 1 cut(s) 1150
Bsh1236I CGCG 2 cut(s) 609, 1728
BshFI GGCC 3 cut(s) 14, 334, 1445
BsiHKAI GWGCWC 4 cut(s) 174, 624, 1086, 2961
BsiHKCI CYCGRG 1 cut(s) 1859
BslFI GGGAC 3 cut(s) 1770, 1881, 2720
BslI CCNNNNNNNGG 5 cut(s) 57, 270, 1418, 2006, 2338
BsmAI GTCTC 6 cut(s) 609, 1919, 2180, 2410, 2439, 3042
BsmFI GGGAC 3 cut(s) 1770, 1881, 2720
BsnI GGCC 3 cut(s) 14, 334, 1445
Bso31I GGTCTC 1 cut(s) 1919
BsoBI CYCGRG 1 cut(s) 1859
Bsp1286I GDGCHC 4 cut(s) 174, 624, 1086, 2961
BspACI CCGC 6 cut(s) 1728, 2110, 2183, 2713, 2825, 3085
BspANI GGCC 3 cut(s) 14, 334, 1445
BspCNI CTCAG 3 cut(s) 636, 2820, 3017
BspFNI CGCG 2 cut(s) 609, 1728
BspHI TCATGA 1 cut(s) 406
BspLI GGNNCC 2 cut(s) 28, 354
BspPI GGATC 5 cut(s) 347, 360, 1651, 1805, 2552
BspQI GCTCTTC 1 cut(s) 1091
BspTI CTTAAG 2 cut(s) 1832, 2248
BspTNI GGTCTC 1 cut(s) 1919
BsrDI GCAATG 2 cut(s) 1341, 2201
BsrI ACTGG 4 cut(s) 291, 1314, 2323, 3101
BssECI CCNNGG 3 cut(s) 830, 1752, 2068
BssNAI GTATAC 1 cut(s) 2773
BssNI GRCGYC 1 cut(s) 2733
BssSI CACGAG 1 cut(s) 2436
BssT1I CCWWGG 1 cut(s) 1752
Bst1107I GTATAC 1 cut(s) 2773
Bst2BI CACGAG 1 cut(s) 2436
Bst2UI CCWGG 5 cut(s) 831, 1542, 2039, 2070, 2498
Bst4CI ACNGT 7 cut(s) 1128, 1261, 1701, 1794, 2062, 2310, 2421
Bst6I CTCTTC 3 cut(s) 43, 180, 1091
BstACI GRCGYC 1 cut(s) 2733
BstAFI CTTAAG 2 cut(s) 1832, 2248
BstBAI YACGTR 1 cut(s) 2681
BstC8I GCNNGC 1 cut(s) 2108
BstDEI CTNAG 6 cut(s) 623, 822, 1951, 2102, 2807, 3004
BstEII GGTNACC 1 cut(s) 2820
BstF5I GGATG 5 cut(s) 286, 1485, 1996, 2051, 2479
BstFNI CGCG 2 cut(s) 609, 1728
BstMAI GTCTC 6 cut(s) 609, 1919, 2180, 2410, 2439, 3042
BstMWI GCNNNNNNNGC 5 cut(s) 257, 1489, 1551, 2189, 2198
BstNI CCWGG 5 cut(s) 831, 1542, 2039, 2070, 2498
BstNSI RCATGY 2 cut(s) 2259, 2580
BstPI GGTNACC 1 cut(s) 2820
BstSCI CCNGG 5 cut(s) 829, 1540, 2037, 2068, 2496
BstSFI CTRYAG 1 cut(s) 2306
BstUI CGCG 2 cut(s) 609, 1728
BstV1I GCAGC 4 cut(s) 272, 467, 482, 2632
BstV2I GAAGAC 4 cut(s) 2736, 2985, 2994, 3021
BstX2I RGATCY 1 cut(s) 352
BstYI RGATCY 1 cut(s) 352
BstZ17I GTATAC 1 cut(s) 2773
BsuI GTATCC 1 cut(s) 88
BsuRI GGCC 3 cut(s) 14, 334, 1445
BtrI CACGTC 1 cut(s) 1118
BtsCI GGATG 5 cut(s) 286, 1485, 1996, 2051, 2479
BtsIMutI CAGTG 6 cut(s) 1133, 1307, 2315, 2560, 2815, 2977
Cac8I GCNNGC 1 cut(s) 2108
CaiI CAGNNNCTG 1 cut(s) 2419
CciI TCATGA 1 cut(s) 406
Cfr13I GGNCC 2 cut(s) 2035, 2938
Csp6I GTAC 4 cut(s) 1257, 1430, 2276, 3031
CspCI CAANNNNNGTGG 2 cut(s) 1935, 1970
CviQI GTAC 4 cut(s) 1257, 1430, 2276, 3031
DdeI CTNAG 6 cut(s) 623, 822, 1951, 2102, 2807, 3004
DraI TTTAAA 3 cut(s) 421, 573, 1357
DriI GACNNNNNGTC 1 cut(s) 2485
EaeI YGGCCR 1 cut(s) 332
Eam1104I CTCTTC 3 cut(s) 43, 180, 1091
Eam1105I GACNNNNNGTC 1 cut(s) 2485
EarI CTCTTC 3 cut(s) 43, 180, 1091
Ecl136II GAGCTC 2 cut(s) 172, 1084
Eco130I CCWWGG 1 cut(s) 1752
Eco147I AGGCCT 1 cut(s) 1445
Eco24I GRGCYC 2 cut(s) 174, 1086
Eco31I GGTCTC 1 cut(s) 1919
Eco32I GATATC 2 cut(s) 192, 2222
Eco47I GGWCC 2 cut(s) 2035, 2938
Eco53kI GAGCTC 2 cut(s) 172, 1084
Eco57I CTGAAG 5 cut(s) 1087, 1482, 1892, 2732, 2953
Eco88I CYCGRG 1 cut(s) 1859
Eco91I GGTNACC 1 cut(s) 2820
EcoICRI GAGCTC 2 cut(s) 172, 1084
EcoO65I GGTNACC 1 cut(s) 2820
EcoRI GAATTC 2 cut(s) 4, 2492
EcoRII CCWGG 5 cut(s) 829, 1540, 2037, 2068, 2496
EcoRV GATATC 2 cut(s) 192, 2222
EcoT14I CCWWGG 1 cut(s) 1752
EcoT22I ATGCAT 2 cut(s) 1485, 2285
EcoT38I GRGCYC 2 cut(s) 174, 1086
ErhI CCWWGG 1 cut(s) 1752
FaqI GGGAC 3 cut(s) 1770, 1881, 2720
FauNDI CATATG 2 cut(s) 64, 1203
FblI GTMKAC 1 cut(s) 2772
Fnu4HI GCNGC 4 cut(s) 261, 456, 471, 2646
FokI GGATG 5 cut(s) 293, 1492, 1983, 2058, 2486
FriOI GRGCYC 2 cut(s) 174, 1086
Fsp4HI GCNGC 4 cut(s) 261, 456, 471, 2646
GluI GCNGC 4 cut(s) 261, 456, 471, 2646
GsaI CCCAGC 1 cut(s) 966
GsuI CTGGAG 3 cut(s) 2060, 2306, 2947
HaeIII GGCC 3 cut(s) 14, 334, 1445
Hin1I GRCGYC 1 cut(s) 2733
HincII GTYRAC 1 cut(s) 3094
HindII GTYRAC 1 cut(s) 3094
HindIII AAGCTT 1 cut(s) 1672
HphI GGTGA 7 cut(s) 166, 186, 401, 1521, 1642, 1679, 3050
HpyCH4III ACNGT 7 cut(s) 1128, 1261, 1701, 1794, 2062, 2310, 2421
HpyCH4IV ACGT 5 cut(s) 363, 1117, 1549, 2680, 2733
HpyF10VI GCNNNNNNNGC 5 cut(s) 257, 1489, 1551, 2189, 2198
HpyF3I CTNAG 6 cut(s) 623, 822, 1951, 2102, 2807, 3004
HpySE526I ACGT 5 cut(s) 363, 1117, 1549, 2680, 2733
Hsp92I GRCGYC 1 cut(s) 2733
LguI GCTCTTC 1 cut(s) 1091
LmnI GCTCC 2 cut(s) 26, 2929
Lsp1109I GCAGC 4 cut(s) 272, 467, 482, 2632
LweI GCATC 6 cut(s) 382, 1294, 1470, 1866, 2036, 2292
MaeII ACGT 5 cut(s) 363, 1117, 1549, 2680, 2733
MaeIII GTNAC 8 cut(s) 425, 853, 1247, 1847, 2341, 2438, 2665, 2820
MfeI CAATTG 3 cut(s) 213, 947, 1533
MflI RGATCY 1 cut(s) 352
MhlI GDGCHC 4 cut(s) 174, 624, 1086, 2961
MlyI GAGTC 4 cut(s) 230, 611, 977, 1855
MmeI TCCRAC 2 cut(s) 1987, 2013
Mph1103I ATGCAT 2 cut(s) 1485, 2285
MroXI GAANNNNTTC 4 cut(s) 288, 1445, 1515, 2367
MslI CAYNNNNRTG 4 cut(s) 1628, 2694, 2836, 2916
MspCI CTTAAG 2 cut(s) 1832, 2248
MspR9I CCNGG 5 cut(s) 831, 1542, 2039, 2070, 2498
MunI CAATTG 3 cut(s) 213, 947, 1533
MvaI CCWGG 5 cut(s) 831, 1542, 2039, 2070, 2498
MvnI CGCG 2 cut(s) 609, 1728
MwoI GCNNNNNNNGC 5 cut(s) 257, 1489, 1551, 2189, 2198
NdeI CATATG 2 cut(s) 64, 1203
NlaIV GGNNCC 2 cut(s) 28, 354
NmuCI GTSAC 3 cut(s) 853, 1847, 2438
NsiI ATGCAT 2 cut(s) 1485, 2285
NspI RCATGY 2 cut(s) 2259, 2580
PagI TCATGA 1 cut(s) 406
PceI AGGCCT 1 cut(s) 1445
PciI ACATGT 1 cut(s) 2576
PciSI GCTCTTC 1 cut(s) 1091
PdmI GAANNNNTTC 4 cut(s) 288, 1445, 1515, 2367
PflMI CCANNNNNTGG 1 cut(s) 2338
PkrI GCNGC 4 cut(s) 262, 457, 472, 2647
PleI GAGTC 4 cut(s) 229, 610, 976, 1854
PpsI GAGTC 4 cut(s) 229, 610, 976, 1854
Ppu21I YACGTR 1 cut(s) 2681
PscI ACATGT 1 cut(s) 2576
PshBI ATTAAT 1 cut(s) 2229
Psp124BI GAGCTC 2 cut(s) 174, 1086
Psp6I CCWGG 5 cut(s) 829, 1540, 2037, 2068, 2496
PspEI GGTNACC 1 cut(s) 2820
PspFI CCCAGC 1 cut(s) 962
PspGI CCWGG 5 cut(s) 829, 1540, 2037, 2068, 2496
PspN4I GGNNCC 2 cut(s) 28, 354
PspPI GGNCC 2 cut(s) 2035, 2938
PstNI CAGNNNCTG 1 cut(s) 2419
PsuI RGATCY 1 cut(s) 352
RsaI GTAC 4 cut(s) 1258, 1431, 2277, 3032
RsaNI GTAC 4 cut(s) 1257, 1430, 2276, 3031
RseI CAYNNNNRTG 4 cut(s) 1628, 2694, 2836, 2916
SacI GAGCTC 2 cut(s) 174, 1086
SapI GCTCTTC 1 cut(s) 1091
SatI GCNGC 4 cut(s) 261, 456, 471, 2646
Sau96I GGNCC 2 cut(s) 2035, 2938
ScaI AGTACT 1 cut(s) 1258
SchI GAGTC 4 cut(s) 230, 611, 977, 1855
ScrFI CCNGG 5 cut(s) 831, 1542, 2039, 2070, 2498
SduI GDGCHC 4 cut(s) 174, 624, 1086, 2961
SfaNI GCATC 6 cut(s) 382, 1294, 1470, 1866, 2036, 2292
SfcI CTRYAG 1 cut(s) 2306
SinI GGWCC 2 cut(s) 2035, 2938
SmiI ATTTAAAT 1 cut(s) 573
SmiMI CAYNNNNRTG 4 cut(s) 1628, 2694, 2836, 2916
SmlI CTYRAG 6 cut(s) 549, 1660, 1832, 2126, 2248, 3019
SmoI CTYRAG 6 cut(s) 549, 1660, 1832, 2126, 2248, 3019
SseBI AGGCCT 1 cut(s) 1445
SsiI CCGC 6 cut(s) 1728, 2110, 2183, 2713, 2825, 3085
SspI AATATT 2 cut(s) 811, 2864
SstI GAGCTC 2 cut(s) 174, 1086
StuI AGGCCT 1 cut(s) 1445
StyD4I CCNGG 5 cut(s) 829, 1540, 2037, 2068, 2496
StyI CCWWGG 1 cut(s) 1752
SwaI ATTTAAAT 1 cut(s) 573
TaaI ACNGT 7 cut(s) 1128, 1261, 1701, 1794, 2062, 2310, 2421
TaiI ACGT 5 cut(s) 366, 1120, 1552, 2683, 2736
TaqI TCGA 5 cut(s) 224, 2235, 2602, 2842, 3079
TatI WGTACW 2 cut(s) 1256, 3030
TscAI CASTG 6 cut(s) 1133, 1314, 2315, 2560, 2815, 2977
TseFI GTSAC 3 cut(s) 853, 1847, 2438
TseI GCWGC 4 cut(s) 260, 455, 470, 2645
Tsp45I GTSAC 3 cut(s) 853, 1847, 2438
TspGWI ACGGA 1 cut(s) 855
TspRI CASTG 6 cut(s) 1133, 1314, 2315, 2560, 2815, 2977
Van91I CCANNNNNTGG 1 cut(s) 2338
Vha464I CTTAAG 2 cut(s) 1832, 2248
VpaK11BI GGWCC 2 cut(s) 2035, 2938
VspI ATTAAT 1 cut(s) 2229
XceI RCATGY 2 cut(s) 2259, 2580
XmiI GTMKAC 1 cut(s) 2772
XmnI GAANNNNTTC 4 cut(s) 288, 1445, 1515, 2367
ZraI GACGTC 1 cut(s) 2734
ZrmI AGTACT 1 cut(s) 1258
Zsp2I ATGCAT 2 cut(s) 1485, 2285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.