Rmu_ssc0000144.1_g000014

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000144.1
OG0000348
Physical Location & Seq
Reverse (-)
71282 .. 72961
1680 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000144.1_g000014.1.cds

Sequence Viewer

Length: 459 bp
atgcaacaagtagaggacgttgtgattgtgggagctggaatttctggcctcacaaccgccctgggacttcacaggctgggcattaggagcttagtgctggaatcgtttgatagcttgaggataacagggtttgcactcggaatatggactaatgcgtggagggctttagatgccattggtgttggtgatcatttacggcagcaacatcacactgttgttgggaatgtggttttctcgagaatttcagggcttcagatgtttaaggtgtcatttaaggcgaaaggaaaacaagaccatgaaatgcgttgtgtgaaaaggaagttgctgttggaagcccttgcaagtgaacttcctagcggcaccattaggttctcttcaaaagttgtttccattgaggaatcaggctactttaagctggtgcatcttgctgacggaaccatcctcaaagccaaggtataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

152

Amino Acids

16.62

Weight (kDa)

9.77

Isoelectric Point (pI)

24.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 359
AciI CCGC 2 cut(s) 57, 357
AcsI RAATTY 2 cut(s) 39, 240
AcuI CTGAAG 1 cut(s) 236
AgsI TTSAA 1 cut(s) 378
AjnI CCWGG 1 cut(s) 60
AjuI GAANNNNNNNTTGG 2 cut(s) 311, 343
AluBI AGCT 4 cut(s) 35, 90, 114, 415
AluI AGCT 4 cut(s) 35, 90, 114, 415
Ama87I CYCGRG 1 cut(s) 235
AoxI GGCC 1 cut(s) 46
ApeKI GCWGC 1 cut(s) 199
ApoI RAATTY 2 cut(s) 39, 240
AsuHPI GGTGA 1 cut(s) 197
AvaI CYCGRG 1 cut(s) 235
BanI GGYRCC 1 cut(s) 359
BbvI GCAGC 1 cut(s) 211
BccI CCATC 1 cut(s) 446
BceAI ACGGC 1 cut(s) 212
BciT130I CCWGG 1 cut(s) 62
BclI TGATCA 1 cut(s) 187
BfaI CTAG 1 cut(s) 354
BisI GCNGC 2 cut(s) 200, 358
BlsI GCNGC 2 cut(s) 201, 359
Bme1390I CCNGG 1 cut(s) 62
BmeT110I CYCGRG 1 cut(s) 235
BmiI GGNNCC 2 cut(s) 361, 436
BmrFI CCNGG 1 cut(s) 62
BmsI GCATC 2 cut(s) 160, 430
BpuEI CTTGAG 1 cut(s) 136
BsaJI CCNNGG 3 cut(s) 60, 61, 450
BseBI CCWGG 1 cut(s) 62
BseDI CCNNGG 3 cut(s) 60, 61, 450
BseGI GGATG 1 cut(s) 438
BseXI GCAGC 1 cut(s) 211
BseYI CCCAGC 1 cut(s) 76
BshFI GGCC 1 cut(s) 48
BshNI GGYRCC 1 cut(s) 359
BsiHKCI CYCGRG 1 cut(s) 235
BslFI GGGAC 1 cut(s) 78
BsmFI GGGAC 1 cut(s) 78
BsnI GGCC 1 cut(s) 48
BsoBI CYCGRG 1 cut(s) 235
Bsp143I GATC 1 cut(s) 187
BspACI CCGC 2 cut(s) 57, 357
BspANI GGCC 1 cut(s) 48
BspLI GGNNCC 2 cut(s) 361, 436
BspT107I GGYRCC 1 cut(s) 359
BssECI CCNNGG 3 cut(s) 60, 61, 450
BssMI GATC 1 cut(s) 187
BssT1I CCWWGG 1 cut(s) 450
Bst2UI CCWGG 1 cut(s) 62
Bst4CI ACNGT 1 cut(s) 214
Bst6I CTCTTC 1 cut(s) 379
BstDEI CTNAG 1 cut(s) 91
BstF5I GGATG 1 cut(s) 438
BstKTI GATC 1 cut(s) 190
BstMBI GATC 1 cut(s) 187
BstMWI GCNNNNNNNGC 3 cut(s) 87, 161, 170
BstNI CCWGG 1 cut(s) 62
BstSCI CCNGG 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 211
BsuRI GGCC 1 cut(s) 48
BtsCI GGATG 1 cut(s) 438
BtsIMutI CAGTG 1 cut(s) 210
CviAII CATG 1 cut(s) 296
DdeI CTNAG 1 cut(s) 91
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
Eam1104I CTCTTC 1 cut(s) 379
EarI CTCTTC 1 cut(s) 379
Eco130I CCWWGG 1 cut(s) 450
Eco57I CTGAAG 1 cut(s) 236
Eco88I CYCGRG 1 cut(s) 235
EcoRII CCWGG 1 cut(s) 60
EcoT14I CCWWGG 1 cut(s) 450
ErhI CCWWGG 1 cut(s) 450
FaeI CATG 1 cut(s) 299
FaiI YATR 3 cut(s) 145, 297, 457
FaqI GGGAC 1 cut(s) 78
FatI CATG 1 cut(s) 295
FbaI TGATCA 1 cut(s) 187
Fnu4HI GCNGC 2 cut(s) 200, 358
FokI GGATG 1 cut(s) 425
Fsp4HI GCNGC 2 cut(s) 200, 358
FspBI CTAG 1 cut(s) 354
GluI GCNGC 2 cut(s) 200, 358
GsaI CCCAGC 1 cut(s) 80
HaeIII GGCC 1 cut(s) 48
Hin1II CATG 1 cut(s) 299
HinfI GANTC 2 cut(s) 101, 398
HphI GGTGA 1 cut(s) 197
Hpy166II GTNNAC 1 cut(s) 347
Hpy188I TCNGA 2 cut(s) 140, 255
Hpy188III TCNNGA 2 cut(s) 235, 237
Hpy8I GTNNAC 1 cut(s) 347
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 4 cut(s) 4, 134, 341, 421
HpyF10VI GCNNNNNNNGC 3 cut(s) 87, 161, 170
HpyF3I CTNAG 1 cut(s) 91
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 1 cut(s) 299
Ksp22I TGATCA 1 cut(s) 187
Kzo9I GATC 1 cut(s) 187
LmnI GCTCC 2 cut(s) 32, 87
Lsp1109I GCAGC 1 cut(s) 211
LweI GCATC 2 cut(s) 160, 430
MaeI CTAG 1 cut(s) 354
MaeII ACGT 1 cut(s) 18
MalI GATC 1 cut(s) 189
MboI GATC 1 cut(s) 187
MboII GAAGA 1 cut(s) 366
MluCI AATT 2 cut(s) 39, 240
MmeI TCCRAC 1 cut(s) 309
MnlI CCTC 6 cut(s) 7, 59, 111, 153, 388, 452
MseI TTAA 3 cut(s) 261, 273, 411
MspR9I CCNGG 1 cut(s) 62
MvaI CCWGG 1 cut(s) 62
MwoI GCNNNNNNNGC 3 cut(s) 87, 161, 170
NdeII GATC 1 cut(s) 187
NlaIII CATG 1 cut(s) 299
NlaIV GGNNCC 2 cut(s) 361, 436
PaeR7I CTCGAG 1 cut(s) 235
PasI CCCWGGG 1 cut(s) 61
PfeI GAWTC 2 cut(s) 101, 398
PkrI GCNGC 2 cut(s) 201, 359
Psp6I CCWGG 1 cut(s) 60
PspFI CCCAGC 1 cut(s) 76
PspGI CCWGG 1 cut(s) 60
PspN4I GGNNCC 2 cut(s) 361, 436
SaqAI TTAA 3 cut(s) 261, 273, 411
SatI GCNGC 2 cut(s) 200, 358
Sau3AI GATC 1 cut(s) 187
ScrFI CCNGG 1 cut(s) 62
SetI ASST 8 cut(s) 21, 37, 92, 116, 267, 371, 417, 456
SfaNI GCATC 2 cut(s) 160, 430
Sfr274I CTCGAG 1 cut(s) 235
SlaI CTCGAG 1 cut(s) 235
SmlI CTYRAG 2 cut(s) 115, 235
SmoI CTYRAG 2 cut(s) 115, 235
Sse9I AATT 2 cut(s) 39, 240
SsiI CCGC 2 cut(s) 57, 357
SspMI CTAG 1 cut(s) 354
StyD4I CCNGG 1 cut(s) 60
StyI CCWWGG 1 cut(s) 450
TaaI ACNGT 1 cut(s) 214
TaiI ACGT 1 cut(s) 21
TaqI TCGA 1 cut(s) 236
TasI AATT 2 cut(s) 39, 240
TauI GCSGC 1 cut(s) 360
TfiI GAWTC 2 cut(s) 101, 398
Tru1I TTAA 3 cut(s) 261, 273, 411
Tru9I TTAA 3 cut(s) 261, 273, 411
TscAI CASTG 1 cut(s) 217
TseI GCWGC 1 cut(s) 199
TspDTI ATGAA 1 cut(s) 312
TspGWI ACGGA 1 cut(s) 447
TspRI CASTG 1 cut(s) 217
XapI RAATTY 2 cut(s) 39, 240
XhoI CTCGAG 1 cut(s) 235
XspI CTAG 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.