RchiOBHm_Chr6g0278671

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000348
Physical Location & Seq
Reverse (-)
41743736 .. 41745710
1975 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24996

Sequence Viewer

Length: 954 bp
ATGTGCAGTGGAGACCATGAAATTCGTTGTGTGAAAAGGAAGTCGCTGTTAGAAGCCCTTTCGAGTGAACTTCCTAGGGCCACCATTAGGTTCTCTTCAAAGGTTGTTTCCATTGAGGAATCAGGCTACTTTAAGCTGGTGCATCTTGCCGACGGAACCATCCTCAAAGCCAAGGTTTTGGTTGGATGTGACGGAGTAAATTCAGTGGTTGCAAAATGGCTGGGCTTCAAGCCTCCGGTCTTTACAGGAAGATCTGCCATTCGAGGTAGTGCTGAGTTCAAGAGCAGCCATGAGTTTGATCCCATGTTCATGGAGTACTTTGGGAATGGTGTTAGATCTGGTGTAGTTCCTTGTAATGATAAAAATGTTTACTGGTACTTCACTTGGTCTCCCTCCAGCCAAGAGCTAGAGGAAAACCCAGCTCAGTTGAAGCGATATATGTTAAGCAAGCTCGGAAAGGTATCAGATGAAGTACGGGCCGTTGTGGAAAACACCGATTTGGATGCTTTTATACCCTCTCCATTGAGATATAGGCATCCTTGGGAACTTATTTGGGGAAATATTAGCAAAGGTAATGTATGTGTGGCTGGAGACGCGCTCCACCCCATGACCCCAGACATTGGACAAGGTGGCTGTGCTGCATTAGAGGACGGTGTTGTATTAGCAAGGTGTCTTGGTGAGGCTTTGTTGAAGAATCGGAGCCAAGAAATTAGAGATGAAGGTGAACAAGGAAAAGTGGAATATAAAATGATTGAAAGAGGGTTGAATAAGTATGCCAGTGAGAGGAAATGGAGAAGTTTTGATCTTATTAGTACAGCTTATGTGGTTGGTTTTATACAGGAGGCTGATGGAAAAATAATGACTTTCTTGAGGGACAAGTTTTTCTCTCCAATCCTGGCCGGGTTGCGGTTGAAGAAGGCTGATTATGATTGTGGTAAGCTCAGAAGATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

317

Amino Acids

35.51

Weight (kDa)

8.66

Isoelectric Point (pI)

40.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 17 - 237 4.1e-16 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 620
AccII CGCG 1 cut(s) 596
AciI CCGC 1 cut(s) 907
AclWI GGATC 1 cut(s) 293
AcoI YGGCCR 1 cut(s) 897
AcsI RAATTY 2 cut(s) 21, 199
AfaI GTAC 4 cut(s) 317, 377, 474, 814
AfiI CCNNNNNNNGG 4 cut(s) 87, 620, 783, 906
AgsI TTSAA 8 cut(s) 99, 229, 280, 430, 691, 755, 766, 913
AjnI CCWGG 1 cut(s) 894
AluBI AGCT 6 cut(s) 136, 406, 422, 451, 818, 940
AluI AGCT 6 cut(s) 136, 406, 422, 451, 818, 940
Alw26I GTCTC 3 cut(s) 6, 393, 585
AlwI GGATC 1 cut(s) 293
AoxI GGCC 3 cut(s) 78, 477, 897
ApeKI GCWGC 2 cut(s) 285, 638
ApoI RAATTY 2 cut(s) 21, 199
AspA2I CCTAGG 1 cut(s) 74
AspLEI GCGC 1 cut(s) 598
AspS9I GGNCC 2 cut(s) 78, 477
AsuC2I CCSGG 1 cut(s) 901
AsuHPI GGTGA 2 cut(s) 689, 734
AvrII CCTAGG 1 cut(s) 74
BbvI GCAGC 2 cut(s) 297, 625
BccI CCATC 2 cut(s) 167, 842
BceAI ACGGC 1 cut(s) 464
BcgI CGANNNNNNTGC 2 cut(s) 485, 519
BciT130I CCWGG 1 cut(s) 896
BcnI CCSGG 1 cut(s) 901
BcoDI GTCTC 3 cut(s) 6, 393, 585
BfaI CTAG 2 cut(s) 75, 407
BglII AGATCT 3 cut(s) 251, 335, 947
BisI GCNGC 2 cut(s) 286, 639
BlnI CCTAGG 1 cut(s) 74
BlsI GCNGC 2 cut(s) 287, 640
BmcAI AGTACT 1 cut(s) 317
Bme1390I CCNGG 2 cut(s) 896, 901
BmgT120I GGNCC 2 cut(s) 78, 477
BmiI GGNNCC 2 cut(s) 157, 701
BmrFI CCNGG 2 cut(s) 896, 901
BmsI GCATC 3 cut(s) 151, 493, 544
BplI GAGNNNNNCTC 2 cut(s) 582, 614
BpmI CTGGAG 2 cut(s) 379, 609
BpuEI CTTGAG 1 cut(s) 889
BpuMI CCSGG 1 cut(s) 901
BsaI GGTCTC 2 cut(s) 6, 393
BsaJI CCNNGG 3 cut(s) 74, 171, 539
BsaWI WCCGGW 1 cut(s) 235
BsaXI ACNNNNNCTCC 2 cut(s) 373, 403
Bsc4I CCNNNNNNNGG 4 cut(s) 87, 620, 783, 906
Bse1I ACTGG 2 cut(s) 377, 777
BseBI CCWGG 1 cut(s) 896
BseDI CCNNGG 3 cut(s) 74, 171, 539
BseGI GGATG 4 cut(s) 159, 191, 508, 535
BseLI CCNNNNNNNGG 4 cut(s) 87, 620, 783, 906
BseMII CTCAG 2 cut(s) 264, 437
BseNI ACTGG 2 cut(s) 377, 777
BseXI GCAGC 2 cut(s) 297, 625
BseYI CCCAGC 2 cut(s) 220, 418
BsgI GTGCAG 1 cut(s) 25
Bsh1236I CGCG 1 cut(s) 596
BshFI GGCC 3 cut(s) 80, 479, 899
BsiSI CCGG 2 cut(s) 236, 900
BslFI GGGAC 1 cut(s) 887
BslI CCNNNNNNNGG 4 cut(s) 87, 620, 783, 906
BsmAI GTCTC 3 cut(s) 6, 393, 585
BsmBI CGTCTC 1 cut(s) 585
BsmFI GGGAC 1 cut(s) 887
BsnI GGCC 3 cut(s) 80, 479, 899
Bso31I GGTCTC 2 cut(s) 6, 393
Bsp143I GATC 5 cut(s) 251, 298, 335, 802, 947
BspACI CCGC 1 cut(s) 907
BspANI GGCC 3 cut(s) 80, 479, 899
BspCNI CTCAG 3 cut(s) 265, 436, 954
BspFNI CGCG 1 cut(s) 596
BspLI GGNNCC 2 cut(s) 157, 701
BspPI GGATC 1 cut(s) 293
BspTNI GGTCTC 2 cut(s) 6, 393
BsrI ACTGG 2 cut(s) 377, 777
BssECI CCNNGG 3 cut(s) 74, 171, 539
BssMI GATC 5 cut(s) 251, 298, 335, 802, 947
BssT1I CCWWGG 3 cut(s) 74, 171, 539
Bst2UI CCWGG 1 cut(s) 896
Bst4CI ACNGT 1 cut(s) 653
Bst6I CTCTTC 1 cut(s) 100
BstC8I GCNNGC 1 cut(s) 449
BstDEI CTNAG 3 cut(s) 273, 423, 941
BstF5I GGATG 4 cut(s) 159, 191, 508, 535
BstFNI CGCG 1 cut(s) 596
BstHHI GCGC 1 cut(s) 598
BstKTI GATC 5 cut(s) 254, 301, 338, 805, 950
BstMAI GTCTC 3 cut(s) 6, 393, 585
BstMBI GATC 5 cut(s) 251, 298, 335, 802, 947
BstMWI GCNNNNNNNGC 1 cut(s) 593
BstNI CCWGG 1 cut(s) 896
BstSCI CCNGG 2 cut(s) 894, 899
BstUI CGCG 1 cut(s) 596
BstV1I GCAGC 2 cut(s) 297, 625
BstX2I RGATCY 3 cut(s) 251, 335, 947
BstXI CCANNNNNNTGG 2 cut(s) 178, 310
BstYI RGATCY 3 cut(s) 251, 335, 947
BsuRI GGCC 3 cut(s) 80, 479, 899
BtsCI GGATG 4 cut(s) 159, 191, 508, 535
BtsI GCAGTG 1 cut(s) 13
BtsIMutI CAGTG 3 cut(s) 13, 210, 784
Cac8I GCNNGC 1 cut(s) 449
CfoI GCGC 1 cut(s) 598
Cfr13I GGNCC 2 cut(s) 78, 477
CseI GACGC 1 cut(s) 602
Csp6I GTAC 4 cut(s) 316, 376, 473, 813
CviAII CATG 5 cut(s) 17, 290, 304, 310, 607
CviQI GTAC 4 cut(s) 316, 376, 473, 813
DdeI CTNAG 3 cut(s) 273, 423, 941
DpnI GATC 5 cut(s) 253, 300, 337, 804, 949
DpnII GATC 5 cut(s) 251, 298, 335, 802, 947
EaeI YGGCCR 1 cut(s) 897
Eam1104I CTCTTC 1 cut(s) 100
EarI CTCTTC 1 cut(s) 100
Eco130I CCWWGG 3 cut(s) 74, 171, 539
Eco31I GGTCTC 2 cut(s) 6, 393
EcoRII CCWGG 1 cut(s) 894
EcoT14I CCWWGG 3 cut(s) 74, 171, 539
ErhI CCWWGG 3 cut(s) 74, 171, 539
Esp3I CGTCTC 1 cut(s) 585
FaeI CATG 5 cut(s) 20, 293, 307, 313, 610
FaqI GGGAC 1 cut(s) 887
FatI CATG 5 cut(s) 16, 289, 303, 309, 606
Fnu4HI GCNGC 2 cut(s) 286, 639
FokI GGATG 4 cut(s) 146, 198, 515, 522
Fsp4HI GCNGC 2 cut(s) 286, 639
FspBI CTAG 2 cut(s) 75, 407
GlaI GCGC 1 cut(s) 597
GluI GCNGC 2 cut(s) 286, 639
GsaI CCCAGC 2 cut(s) 224, 422
GsuI CTGGAG 2 cut(s) 379, 609
HaeIII GGCC 3 cut(s) 80, 479, 899
HapII CCGG 2 cut(s) 236, 900
HgaI GACGC 1 cut(s) 602
HhaI GCGC 1 cut(s) 598
Hin1II CATG 5 cut(s) 20, 293, 307, 313, 610
Hin6I GCGC 1 cut(s) 596
HinP1I GCGC 1 cut(s) 596
HinfI GANTC 2 cut(s) 119, 694
HpaII CCGG 2 cut(s) 236, 900
HphI GGTGA 2 cut(s) 689, 734
Hpy166II GTNNAC 3 cut(s) 68, 370, 725
Hpy188I TCNGA 4 cut(s) 455, 466, 699, 944
Hpy188III TCNNGA 2 cut(s) 280, 868
Hpy8I GTNNAC 3 cut(s) 68, 370, 725
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 2 cut(s) 713, 910
HpyCH4III ACNGT 1 cut(s) 653
HpyCH4V TGCA 4 cut(s) 6, 142, 212, 641
HpyF10VI GCNNNNNNNGC 1 cut(s) 593
HpyF3I CTNAG 3 cut(s) 273, 423, 941
Hsp92II CATG 5 cut(s) 20, 293, 307, 313, 610
HspAI GCGC 1 cut(s) 596
Kzo9I GATC 5 cut(s) 251, 298, 335, 802, 947
LmnI GCTCC 2 cut(s) 603, 699
Lsp1109I GCAGC 2 cut(s) 297, 625
LweI GCATC 3 cut(s) 151, 493, 544
MaeI CTAG 2 cut(s) 75, 407
MaeIII GTNAC 1 cut(s) 188
MalI GATC 5 cut(s) 253, 300, 337, 804, 949
MboI GATC 5 cut(s) 251, 298, 335, 802, 947
MboII GAAGA 4 cut(s) 87, 261, 703, 925
MflI RGATCY 3 cut(s) 251, 335, 947
MluCI AATT 3 cut(s) 21, 199, 708
MmeI TCCRAC 1 cut(s) 163
MseI TTAA 3 cut(s) 132, 443, 952
MslI CAYNNNNRTG 1 cut(s) 308
MspI CCGG 2 cut(s) 236, 900
MspR9I CCNGG 2 cut(s) 896, 901
MvaI CCWGG 1 cut(s) 896
MvnI CGCG 1 cut(s) 596
MwoI GCNNNNNNNGC 1 cut(s) 593
NciI CCSGG 1 cut(s) 901
NdeII GATC 5 cut(s) 251, 298, 335, 802, 947
NlaIII CATG 5 cut(s) 20, 293, 307, 313, 610
NlaIV GGNNCC 2 cut(s) 157, 701
NmuCI GTSAC 1 cut(s) 188
PfeI GAWTC 2 cut(s) 119, 694
PflMI CCANNNNNTGG 1 cut(s) 620
PkrI GCNGC 2 cut(s) 287, 640
Psp6I CCWGG 1 cut(s) 894
PspFI CCCAGC 2 cut(s) 220, 418
PspGI CCWGG 1 cut(s) 894
PspN4I GGNNCC 2 cut(s) 157, 701
PspPI GGNCC 2 cut(s) 78, 477
PsuI RGATCY 3 cut(s) 251, 335, 947
RsaI GTAC 4 cut(s) 317, 377, 474, 814
RsaNI GTAC 4 cut(s) 316, 376, 473, 813
RseI CAYNNNNRTG 1 cut(s) 308
SaqAI TTAA 3 cut(s) 132, 443, 952
SatI GCNGC 2 cut(s) 286, 639
Sau3AI GATC 5 cut(s) 251, 298, 335, 802, 947
Sau96I GGNCC 2 cut(s) 78, 477
ScaI AGTACT 1 cut(s) 317
ScrFI CCNGG 2 cut(s) 896, 901
SfaNI GCATC 3 cut(s) 151, 493, 544
SmiMI CAYNNNNRTG 1 cut(s) 308
SmlI CTYRAG 1 cut(s) 868
SmoI CTYRAG 1 cut(s) 868
Sse9I AATT 3 cut(s) 21, 199, 708
SsiI CCGC 1 cut(s) 907
SspI AATATT 1 cut(s) 562
SspMI CTAG 2 cut(s) 75, 407
StyD4I CCNGG 2 cut(s) 894, 899
StyI CCWWGG 3 cut(s) 74, 171, 539
TaaI ACNGT 1 cut(s) 653
TaqI TCGA 2 cut(s) 62, 262
TasI AATT 3 cut(s) 21, 199, 708
TatI WGTACW 2 cut(s) 315, 812
TfiI GAWTC 2 cut(s) 119, 694
Tru1I TTAA 3 cut(s) 132, 443, 952
Tru9I TTAA 3 cut(s) 132, 443, 952
TscAI CASTG 3 cut(s) 13, 210, 784
TseFI GTSAC 1 cut(s) 188
TseI GCWGC 2 cut(s) 285, 638
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 4 cut(s) 33, 298, 483, 732
TspGWI ACGGA 2 cut(s) 168, 207
TspRI CASTG 3 cut(s) 13, 210, 784
Van91I CCANNNNNTGG 1 cut(s) 620
XapI RAATTY 2 cut(s) 21, 199
XmaJI CCTAGG 1 cut(s) 74
XspI CTAG 2 cut(s) 75, 407
ZrmI AGTACT 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.