Rroxscaffold_7G00189710

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000348
Physical Location & Seq
Forward (+)
29528298 .. 29529591
1294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00189710.1

Sequence Viewer

Length: 444 bp
ATGCAAGTAGTAGAGGACGTTGTGATTGTAGGAGCTGGAATTTCTGGCCTCACAACCGCCCTGGGACTTCACAGGCTGGGCATTAGGAGCTTAGTGCTGGAATCGTTTGATAGCTTGAGGATAACAGGGTTTGCACTCACAACATGGACTAATGCGTGGAAGGCTTTAGATGCCATTGGTGTTGGTGATTATTTACGGCAGCAACACCTGACTCTTCTTGGAATTTCAGGGCTTCAGACGTTTGAGATGTCATTTAAGGAGAAAGGAGAACATGGAGACCATGAAAATCGTTGTGTGAAAAGGAAGTTGCTGTTAGAAGCCCTTGCAAGTGAACTTCCTAGTGGCAGCATTAGGTTCTCTTCAAAGGTTGTTTCCATTGAGGAATCAGGCTGCTTTAAGCTGGTGCATCTTGCTGACGGAACCATCCTCAAAGCCAAGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

147

Amino Acids

15.96

Weight (kDa)

6.96

Isoelectric Point (pI)

26.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 6 - 82 3.1e-08 FAD binding domain
DAO PF01266 6 - 45 1.9e-06 FAD dependent oxidoreductase
Lycopene_cycl PF05834 6 - 146 1.6e-06 Lycopene cyclase protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 57
AcsI RAATTY 2 cut(s) 39, 222
AcuI CTGAAG 1 cut(s) 218
AgsI TTSAA 1 cut(s) 363
AjnI CCWGG 1 cut(s) 60
AluBI AGCT 4 cut(s) 35, 90, 114, 400
AluI AGCT 4 cut(s) 35, 90, 114, 400
Alw26I GTCTC 1 cut(s) 270
AoxI GGCC 1 cut(s) 46
ApeKI GCWGC 3 cut(s) 199, 345, 390
ApoI RAATTY 2 cut(s) 39, 222
AsuHPI GGTGA 1 cut(s) 197
BbvI GCAGC 3 cut(s) 211, 357, 377
BccI CCATC 1 cut(s) 431
BceAI ACGGC 1 cut(s) 212
BciT130I CCWGG 1 cut(s) 62
BcoDI GTCTC 1 cut(s) 270
BfaI CTAG 1 cut(s) 339
BisI GCNGC 3 cut(s) 200, 346, 391
BlsI GCNGC 3 cut(s) 201, 347, 392
Bme1390I CCNGG 1 cut(s) 62
BmiI GGNNCC 1 cut(s) 421
BmrFI CCNGG 1 cut(s) 62
BmsI GCATC 2 cut(s) 160, 415
BpuEI CTTGAG 1 cut(s) 136
BsaI GGTCTC 1 cut(s) 270
BsaJI CCNNGG 3 cut(s) 60, 61, 435
BseBI CCWGG 1 cut(s) 62
BseDI CCNNGG 3 cut(s) 60, 61, 435
BseGI GGATG 1 cut(s) 423
BseXI GCAGC 3 cut(s) 211, 357, 377
BseYI CCCAGC 1 cut(s) 76
BshFI GGCC 1 cut(s) 48
BslFI GGGAC 1 cut(s) 78
BsmAI GTCTC 1 cut(s) 270
BsmFI GGGAC 1 cut(s) 78
BsnI GGCC 1 cut(s) 48
Bso31I GGTCTC 1 cut(s) 270
BspACI CCGC 1 cut(s) 57
BspANI GGCC 1 cut(s) 48
BspLI GGNNCC 1 cut(s) 421
BspTNI GGTCTC 1 cut(s) 270
BssECI CCNNGG 3 cut(s) 60, 61, 435
BssT1I CCWWGG 1 cut(s) 435
Bst2UI CCWGG 1 cut(s) 62
Bst6I CTCTTC 2 cut(s) 219, 364
BstDEI CTNAG 1 cut(s) 91
BstF5I GGATG 1 cut(s) 423
BstMAI GTCTC 1 cut(s) 270
BstMWI GCNNNNNNNGC 3 cut(s) 87, 161, 170
BstNI CCWGG 1 cut(s) 62
BstSCI CCNGG 1 cut(s) 60
BstV1I GCAGC 3 cut(s) 211, 357, 377
BsuRI GGCC 1 cut(s) 48
BtsCI GGATG 1 cut(s) 423
CviAII CATG 3 cut(s) 144, 272, 281
DdeI CTNAG 1 cut(s) 91
Eam1104I CTCTTC 2 cut(s) 219, 364
EarI CTCTTC 2 cut(s) 219, 364
Eco130I CCWWGG 1 cut(s) 435
Eco31I GGTCTC 1 cut(s) 270
Eco57I CTGAAG 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 60
EcoT14I CCWWGG 1 cut(s) 435
ErhI CCWWGG 1 cut(s) 435
FaeI CATG 3 cut(s) 147, 275, 284
FaiI YATR 4 cut(s) 145, 273, 282, 442
FaqI GGGAC 1 cut(s) 78
FatI CATG 3 cut(s) 143, 271, 280
Fnu4HI GCNGC 3 cut(s) 200, 346, 391
FokI GGATG 1 cut(s) 410
Fsp4HI GCNGC 3 cut(s) 200, 346, 391
FspBI CTAG 1 cut(s) 339
GluI GCNGC 3 cut(s) 200, 346, 391
GsaI CCCAGC 1 cut(s) 80
HaeIII GGCC 1 cut(s) 48
Hin1II CATG 3 cut(s) 147, 275, 284
HinfI GANTC 3 cut(s) 101, 211, 383
HphI GGTGA 1 cut(s) 197
Hpy166II GTNNAC 1 cut(s) 332
Hpy188I TCNGA 1 cut(s) 237
Hpy8I GTNNAC 1 cut(s) 332
HpyAV CCTTC 1 cut(s) 154
HpyCH4IV ACGT 2 cut(s) 18, 239
HpyCH4V TGCA 4 cut(s) 4, 134, 326, 406
HpyF10VI GCNNNNNNNGC 3 cut(s) 87, 161, 170
HpyF3I CTNAG 1 cut(s) 91
HpySE526I ACGT 2 cut(s) 18, 239
Hsp92II CATG 3 cut(s) 147, 275, 284
LmnI GCTCC 2 cut(s) 32, 87
Lsp1109I GCAGC 3 cut(s) 211, 357, 377
LweI GCATC 2 cut(s) 160, 415
MaeI CTAG 1 cut(s) 339
MaeII ACGT 2 cut(s) 18, 239
MboII GAAGA 2 cut(s) 206, 351
MluCI AATT 2 cut(s) 39, 222
MlyI GAGTC 1 cut(s) 205
MnlI CCTC 5 cut(s) 7, 59, 111, 373, 437
MseI TTAA 2 cut(s) 255, 396
MspR9I CCNGG 1 cut(s) 62
MvaI CCWGG 1 cut(s) 62
MwoI GCNNNNNNNGC 3 cut(s) 87, 161, 170
NlaIII CATG 3 cut(s) 147, 275, 284
NlaIV GGNNCC 1 cut(s) 421
PasI CCCWGGG 1 cut(s) 61
PfeI GAWTC 2 cut(s) 101, 383
PkrI GCNGC 3 cut(s) 201, 347, 392
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
Psp6I CCWGG 1 cut(s) 60
PspFI CCCAGC 1 cut(s) 76
PspGI CCWGG 1 cut(s) 60
PspN4I GGNNCC 1 cut(s) 421
SaqAI TTAA 2 cut(s) 255, 396
SatI GCNGC 3 cut(s) 200, 346, 391
SchI GAGTC 1 cut(s) 205
ScrFI CCNGG 1 cut(s) 62
SfaNI GCATC 2 cut(s) 160, 415
SmlI CTYRAG 1 cut(s) 115
SmoI CTYRAG 1 cut(s) 115
Sse9I AATT 2 cut(s) 39, 222
SsiI CCGC 1 cut(s) 57
SspMI CTAG 1 cut(s) 339
StyD4I CCNGG 1 cut(s) 60
StyI CCWWGG 1 cut(s) 435
TaiI ACGT 2 cut(s) 21, 242
TasI AATT 2 cut(s) 39, 222
TfiI GAWTC 2 cut(s) 101, 383
Tru1I TTAA 2 cut(s) 255, 396
Tru9I TTAA 2 cut(s) 255, 396
TseI GCWGC 3 cut(s) 199, 345, 390
TspDTI ATGAA 1 cut(s) 297
TspGWI ACGGA 1 cut(s) 432
XapI RAATTY 2 cut(s) 39, 222
XspI CTAG 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.