Prupe.8G167500_v2.0.a1

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000348
Physical Location & Seq
Reverse (-)
17303362 .. 17304386
1025 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G167500.1

Sequence Viewer

Length: 444 bp
ATGGAAGTAGGAGCAGAAGCACAAGTTGTGATTGTAGGAGCTGGAATTGCTGGAATTGCAACATCCTTAGGACTTCATAGGCTTGGCATCCGACGCTTAGTGTTGGAATCGTCGGATAGTTTGAGGACAACGGGGTTTGCATTCTCAACATGGACAAATGCATGGAAGGCATTAGATGCCCTTGCTATTGGCGATACTCTTCACCGACAACATGAGACACTTCATGGGAATGTGACTTCCTCAACGATTTCTGGGCTTCCAATATTTGAAATATCATTTAAGGCCAGGGGAAAAAATTCGATGTGTGAAAAGGAACTTGTTGCAAATGAGCTCCCTAGTGGCACCATCAGGTTCTCATCCAAGGTGGTTTCAATTGACAAATTGGGCTACTTTAAGCTGGTTCATCTTGCTGATGGAACCATCCTCGAAGCCAAGGTAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

148

Amino Acids

15.75

Weight (kDa)

6.97

Isoelectric Point (pI)

8.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 341
AcsI RAATTY 1 cut(s) 295
AgsI TTSAA 2 cut(s) 269, 372
AjnI CCWGG 1 cut(s) 284
AluBI AGCT 3 cut(s) 41, 331, 397
AluI AGCT 3 cut(s) 41, 331, 397
Alw21I GWGCWC 1 cut(s) 333
Alw26I GTCTC 1 cut(s) 209
AoxI GGCC 1 cut(s) 282
ApoI RAATTY 1 cut(s) 295
Asp700I GAANNNNTTC 1 cut(s) 295
AsuHPI GGTGA 1 cut(s) 194
AxyI CCTNAGG 1 cut(s) 67
BanI GGYRCC 1 cut(s) 341
BanII GRGCYC 1 cut(s) 333
Bbv12I GWGCWC 1 cut(s) 333
BccI CCATC 3 cut(s) 353, 407, 428
BciT130I CCWGG 1 cut(s) 286
BcoDI GTCTC 1 cut(s) 209
BfaI CTAG 1 cut(s) 336
Bme1390I CCNGG 1 cut(s) 286
BmiI GGNNCC 2 cut(s) 343, 418
BmrFI CCNGG 1 cut(s) 286
BmsI GCATC 2 cut(s) 96, 166
BsaJI CCNNGG 3 cut(s) 285, 360, 432
Bse21I CCTNAGG 1 cut(s) 67
BseBI CCWGG 1 cut(s) 286
BseDI CCNNGG 3 cut(s) 285, 360, 432
BseGI GGATG 4 cut(s) 62, 87, 356, 420
BshFI GGCC 1 cut(s) 284
BshNI GGYRCC 1 cut(s) 341
BsiHKAI GWGCWC 1 cut(s) 333
BsmAI GTCTC 1 cut(s) 209
BsmI GAATGC 1 cut(s) 140
BsnI GGCC 1 cut(s) 284
Bsp1286I GDGCHC 1 cut(s) 333
BspANI GGCC 1 cut(s) 284
BspLI GGNNCC 2 cut(s) 343, 418
BspT107I GGYRCC 1 cut(s) 341
BssECI CCNNGG 3 cut(s) 285, 360, 432
BssT1I CCWWGG 2 cut(s) 360, 432
Bst2UI CCWGG 1 cut(s) 286
Bst6I CTCTTC 1 cut(s) 204
BstAPI GCANNNNNTGC 1 cut(s) 176
BstDEI CTNAG 2 cut(s) 67, 97
BstF5I GGATG 4 cut(s) 62, 87, 356, 420
BstMAI GTCTC 1 cut(s) 209
BstMWI GCNNNNNNNGC 5 cut(s) 47, 56, 93, 167, 176
BstNI CCWGG 1 cut(s) 286
BstSCI CCNGG 1 cut(s) 284
Bsu36I CCTNAGG 1 cut(s) 67
BsuRI GGCC 1 cut(s) 284
BtsCI GGATG 4 cut(s) 62, 87, 356, 420
CseI GACGC 1 cut(s) 102
CviAII CATG 4 cut(s) 150, 162, 212, 224
CviJI RGCY 8 cut(s) 41, 82, 256, 284, 331, 387, 397, 431
CviKI_1 RGCY 8 cut(s) 41, 82, 256, 284, 331, 387, 397, 431
DdeI CTNAG 2 cut(s) 67, 97
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Ecl136II GAGCTC 1 cut(s) 331
Eco130I CCWWGG 2 cut(s) 360, 432
Eco24I GRGCYC 1 cut(s) 333
Eco53kI GAGCTC 1 cut(s) 331
Eco81I CCTNAGG 1 cut(s) 67
EcoICRI GAGCTC 1 cut(s) 331
EcoRII CCWGG 1 cut(s) 284
EcoT14I CCWWGG 2 cut(s) 360, 432
EcoT22I ATGCAT 1 cut(s) 163
EcoT38I GRGCYC 1 cut(s) 333
ErhI CCWWGG 2 cut(s) 360, 432
FaeI CATG 4 cut(s) 153, 165, 215, 227
FaiI YATR 5 cut(s) 78, 151, 163, 213, 225
FatI CATG 4 cut(s) 149, 161, 211, 223
FokI GGATG 4 cut(s) 49, 74, 343, 407
FriOI GRGCYC 1 cut(s) 333
FspBI CTAG 1 cut(s) 336
HaeIII GGCC 1 cut(s) 284
HgaI GACGC 1 cut(s) 102
Hin1II CATG 4 cut(s) 153, 165, 215, 227
HinfI GANTC 1 cut(s) 107
HphI GGTGA 1 cut(s) 194
Hpy188I TCNGA 2 cut(s) 92, 115
Hpy99I CGWCG 2 cut(s) 96, 115
HpyAV CCTTC 1 cut(s) 160
HpyCH4V TGCA 4 cut(s) 59, 140, 161, 323
HpyF10VI GCNNNNNNNGC 5 cut(s) 47, 56, 93, 167, 176
HpyF3I CTNAG 2 cut(s) 67, 97
Hsp92II CATG 4 cut(s) 153, 165, 215, 227
LmnI GCTCC 3 cut(s) 11, 38, 336
LpnPI CCDG 7 cut(s) 27, 36, 237, 271, 298, 334, 383
LweI GCATC 2 cut(s) 96, 166
MaeI CTAG 1 cut(s) 336
MaeIII GTNAC 1 cut(s) 232
MboII GAAGA 1 cut(s) 191
MfeI CAATTG 1 cut(s) 372
MhlI GDGCHC 1 cut(s) 333
MluCI AATT 5 cut(s) 45, 54, 295, 372, 380
MmeI TCCRAC 3 cut(s) 84, 93, 115
MnlI CCTC 3 cut(s) 117, 250, 434
Mph1103I ATGCAT 1 cut(s) 163
MroXI GAANNNNTTC 1 cut(s) 295
MseI TTAA 3 cut(s) 279, 393, 442
MslI CAYNNNNRTG 1 cut(s) 228
MspR9I CCNGG 1 cut(s) 286
MunI CAATTG 1 cut(s) 372
Mva1269I GAATGC 1 cut(s) 140
MvaI CCWGG 1 cut(s) 286
MwoI GCNNNNNNNGC 5 cut(s) 47, 56, 93, 167, 176
NlaIII CATG 4 cut(s) 153, 165, 215, 227
NlaIV GGNNCC 2 cut(s) 343, 418
NmuCI GTSAC 1 cut(s) 232
NsiI ATGCAT 1 cut(s) 163
PctI GAATGC 1 cut(s) 140
PdmI GAANNNNTTC 1 cut(s) 295
PfeI GAWTC 1 cut(s) 107
Psp124BI GAGCTC 1 cut(s) 333
Psp6I CCWGG 1 cut(s) 284
PspGI CCWGG 1 cut(s) 284
PspN4I GGNNCC 2 cut(s) 343, 418
RseI CAYNNNNRTG 1 cut(s) 228
SacI GAGCTC 1 cut(s) 333
SaqAI TTAA 3 cut(s) 279, 393, 442
ScrFI CCNGG 1 cut(s) 286
SduI GDGCHC 1 cut(s) 333
SetI ASST 6 cut(s) 43, 333, 353, 366, 399, 438
SfaNI GCATC 2 cut(s) 96, 166
SmiMI CAYNNNNRTG 1 cut(s) 228
Sse9I AATT 5 cut(s) 45, 54, 295, 372, 380
SspI AATATT 1 cut(s) 264
SspMI CTAG 1 cut(s) 336
SstI GAGCTC 1 cut(s) 333
StyD4I CCNGG 1 cut(s) 284
StyI CCWWGG 2 cut(s) 360, 432
TaqI TCGA 2 cut(s) 299, 426
TasI AATT 5 cut(s) 45, 54, 295, 372, 380
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 3 cut(s) 279, 393, 442
Tru9I TTAA 3 cut(s) 279, 393, 442
TseFI GTSAC 1 cut(s) 232
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 3 cut(s) 65, 212, 392
XapI RAATTY 1 cut(s) 295
XmnI GAANNNNTTC 1 cut(s) 295
XspI CTAG 1 cut(s) 336
Zsp2I ATGCAT 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.