Rorug06G0118100

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000348
Physical Location & Seq
Reverse (-)
16155776 .. 16159478
3703 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0118100.1

Sequence Viewer

Length: 447 bp
ATGGTTCTGCAGATCAAGACATCACCAGCAATTTGGGGCAATGATTCAATGAATTCAATAAATCCAGCCCGTCCAAGGTTCCAATCCTGGATCCGCCACTGCTCTCGACCCAATTGCGTTTGGAGTTTTGAATCATCTCAGCCTCTTTTACTTAATCAGATATTATACATATATCTAAAGCTCGGTTCACTGTTCATCACTGTTCATAAAGGTGGGTATGATTCAGTTTCGAAGAAGAGGACCTTAGGAAATGGGGAGACTGAAAGTCATGGAACTTATTTAGAGATTATTGCTTTGCTTGTTTCTGCTGTTATTGTGCTTCTTACATGTTACGGAAACGAGCTCTTTATAATCAGTGAGTGGCCTGTGCTTAAACCCCTTCCATCTTATGGTACAAGAAGAGATGCAGCAGCTGGTATGGAAGTAGTGTTAGATCGTTGGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

148

Amino Acids

16.68

Weight (kDa)

8.84

Isoelectric Point (pI)

43.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 350
AccB7I CCANNNNNTGG 1 cut(s) 389
AciI CCGC 1 cut(s) 94
AclWI GGATC 2 cut(s) 85, 98
AcsI RAATTY 1 cut(s) 52
AfaI GTAC 1 cut(s) 394
AfiI CCNNNNNNNGG 2 cut(s) 75, 389
AflIII ACRYGT 1 cut(s) 326
AgsI TTSAA 3 cut(s) 48, 57, 131
AhdI GACNNNNNGTC 1 cut(s) 264
AjnI CCWGG 1 cut(s) 86
AluBI AGCT 3 cut(s) 181, 343, 413
AluI AGCT 3 cut(s) 181, 343, 413
Alw21I GWGCWC 1 cut(s) 345
Alw26I GTCTC 1 cut(s) 251
AlwI GGATC 2 cut(s) 85, 98
AlwNI CAGNNNCTG 1 cut(s) 413
AoxI GGCC 1 cut(s) 362
ApeKI GCWGC 2 cut(s) 407, 410
ApoI RAATTY 1 cut(s) 52
AspS9I GGNCC 1 cut(s) 240
AsuHPI GGTGA 1 cut(s) 15
AsuII TTCGAA 1 cut(s) 230
AvaII GGWCC 1 cut(s) 240
AxyI CCTNAGG 1 cut(s) 244
BamHI GGATCC 1 cut(s) 90
BanII GRGCYC 1 cut(s) 345
Bbv12I GWGCWC 1 cut(s) 345
BbvI GCAGC 2 cut(s) 419, 422
BccI CCATC 1 cut(s) 391
BcgI CGANNNNNNTGC 2 cut(s) 96, 130
BciT130I CCWGG 1 cut(s) 88
BcoDI GTCTC 1 cut(s) 251
BfaI CTAG 1 cut(s) 445
BfmI CTRYAG 1 cut(s) 8
BisI GCNGC 2 cut(s) 408, 411
BlsI GCNGC 2 cut(s) 409, 412
Bme1390I CCNGG 1 cut(s) 88
Bme18I GGWCC 1 cut(s) 240
BmeRI GACNNNNNGTC 1 cut(s) 264
BmgT120I GGNCC 1 cut(s) 240
BmiI GGNNCC 2 cut(s) 80, 92
BmrFI CCNGG 1 cut(s) 88
BmsI GCATC 1 cut(s) 394
Bpu14I TTCGAA 1 cut(s) 230
BsaJI CCNNGG 1 cut(s) 74
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 389
Bse21I CCTNAGG 1 cut(s) 244
Bse3DI GCAATG 1 cut(s) 46
BseBI CCWGG 1 cut(s) 88
BseDI CCNNGG 1 cut(s) 74
BseLI CCNNNNNNNGG 2 cut(s) 75, 389
BseMI GCAATG 1 cut(s) 46
BseMII CTCAG 1 cut(s) 152
BseXI GCAGC 2 cut(s) 419, 422
BshFI GGCC 1 cut(s) 364
BsiHKAI GWGCWC 1 cut(s) 345
BslI CCNNNNNNNGG 2 cut(s) 75, 389
BsmAI GTCTC 1 cut(s) 251
BsnI GGCC 1 cut(s) 364
Bsp119I TTCGAA 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 345
Bsp143I GATC 4 cut(s) 12, 90, 433, 441
BspACI CCGC 1 cut(s) 94
BspANI GGCC 1 cut(s) 364
BspCNI CTCAG 1 cut(s) 151
BspLI GGNNCC 2 cut(s) 80, 92
BspMAI CTGCAG 1 cut(s) 12
BspPI GGATC 2 cut(s) 85, 98
BspT104I TTCGAA 1 cut(s) 230
BsrDI GCAATG 1 cut(s) 46
BssECI CCNNGG 1 cut(s) 74
BssMI GATC 4 cut(s) 12, 90, 433, 441
BssT1I CCWWGG 1 cut(s) 74
Bst2UI CCWGG 1 cut(s) 88
Bst4CI ACNGT 2 cut(s) 192, 202
Bst6I CTCTTC 2 cut(s) 230, 394
BstBI TTCGAA 1 cut(s) 230
BstDEI CTNAG 2 cut(s) 138, 244
BstKTI GATC 4 cut(s) 15, 93, 436, 444
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 4 cut(s) 12, 90, 433, 441
BstNI CCWGG 1 cut(s) 88
BstNSI RCATGY 1 cut(s) 330
BstSCI CCNGG 1 cut(s) 86
BstSFI CTRYAG 1 cut(s) 8
BstV1I GCAGC 2 cut(s) 419, 422
BstX2I RGATCY 2 cut(s) 90, 441
BstXI CCANNNNNNTGG 1 cut(s) 33
BstYI RGATCY 2 cut(s) 90, 441
Bsu36I CCTNAGG 1 cut(s) 244
BsuRI GGCC 1 cut(s) 364
BtsI GCAGTG 1 cut(s) 97
BtsIMutI CAGTG 4 cut(s) 97, 188, 198, 361
CaiI CAGNNNCTG 1 cut(s) 413
Cfr13I GGNCC 1 cut(s) 240
Csp6I GTAC 1 cut(s) 393
CviAII CATG 2 cut(s) 269, 327
CviJI RGCY 6 cut(s) 68, 142, 181, 343, 364, 413
CviKI_1 RGCY 6 cut(s) 68, 142, 181, 343, 364, 413
CviQI GTAC 1 cut(s) 393
DdeI CTNAG 2 cut(s) 138, 244
DpnI GATC 4 cut(s) 14, 92, 435, 443
DpnII GATC 4 cut(s) 12, 90, 433, 441
DriI GACNNNNNGTC 1 cut(s) 264
Eam1104I CTCTTC 2 cut(s) 230, 394
Eam1105I GACNNNNNGTC 1 cut(s) 264
EarI CTCTTC 2 cut(s) 230, 394
EciI GGCGGA 1 cut(s) 83
Ecl136II GAGCTC 1 cut(s) 343
Eco130I CCWWGG 1 cut(s) 74
Eco24I GRGCYC 1 cut(s) 345
Eco47I GGWCC 1 cut(s) 240
Eco53kI GAGCTC 1 cut(s) 343
Eco81I CCTNAGG 1 cut(s) 244
EcoICRI GAGCTC 1 cut(s) 343
EcoO109I RGGNCCY 1 cut(s) 240
EcoRI GAATTC 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 86
EcoT14I CCWWGG 1 cut(s) 74
EcoT38I GRGCYC 1 cut(s) 345
ErhI CCWWGG 1 cut(s) 74
FaeI CATG 2 cut(s) 272, 330
FalI AAGNNNNNCTT 2 cut(s) 227, 259
FatI CATG 2 cut(s) 268, 326
Fnu4HI GCNGC 2 cut(s) 408, 411
FriOI GRGCYC 1 cut(s) 345
Fsp4HI GCNGC 2 cut(s) 408, 411
FspBI CTAG 1 cut(s) 445
GluI GCNGC 2 cut(s) 408, 411
HaeIII GGCC 1 cut(s) 364
Hin1II CATG 2 cut(s) 272, 330
HinfI GANTC 3 cut(s) 44, 131, 221
HphI GGTGA 1 cut(s) 15
Hpy166II GTNNAC 1 cut(s) 188
Hpy188I TCNGA 1 cut(s) 159
Hpy188III TCNNGA 2 cut(s) 16, 105
Hpy8I GTNNAC 1 cut(s) 188
HpyAV CCTTC 1 cut(s) 389
HpyCH4III ACNGT 2 cut(s) 192, 202
HpyCH4V TGCA 2 cut(s) 10, 407
HpyF3I CTNAG 2 cut(s) 138, 244
Hsp92II CATG 2 cut(s) 272, 330
Kzo9I GATC 4 cut(s) 12, 90, 433, 441
LpnPI CCDG 6 cut(s) 39, 73, 78, 100, 378, 399
Lsp1109I GCAGC 2 cut(s) 419, 422
LweI GCATC 1 cut(s) 394
MaeI CTAG 1 cut(s) 445
MaeIII GTNAC 1 cut(s) 329
MalI GATC 4 cut(s) 14, 92, 435, 443
MboI GATC 4 cut(s) 12, 90, 433, 441
MboII GAAGA 3 cut(s) 244, 247, 411
MfeI CAATTG 1 cut(s) 112
MflI RGATCY 2 cut(s) 90, 441
MhlI GDGCHC 1 cut(s) 345
MluCI AATT 3 cut(s) 30, 52, 112
MmeI TCCRAC 1 cut(s) 419
MnlI CCTC 2 cut(s) 153, 231
MseI TTAA 2 cut(s) 153, 372
MslI CAYNNNNRTG 1 cut(s) 210
MspA1I CMGCKG 1 cut(s) 413
MspR9I CCNGG 1 cut(s) 88
MunI CAATTG 1 cut(s) 112
MvaI CCWGG 1 cut(s) 88
NdeII GATC 4 cut(s) 12, 90, 433, 441
NlaIII CATG 2 cut(s) 272, 330
NlaIV GGNNCC 2 cut(s) 80, 92
NspI RCATGY 1 cut(s) 330
NspV TTCGAA 1 cut(s) 230
PciI ACATGT 1 cut(s) 326
PfeI GAWTC 3 cut(s) 44, 131, 221
PflMI CCANNNNNTGG 1 cut(s) 389
PfoI TCCNGGA 1 cut(s) 86
PkrI GCNGC 2 cut(s) 409, 412
PpuMI RGGWCCY 1 cut(s) 240
PscI ACATGT 1 cut(s) 326
PsiI TTATAA 1 cut(s) 350
Psp124BI GAGCTC 1 cut(s) 345
Psp5II RGGWCCY 1 cut(s) 240
Psp6I CCWGG 1 cut(s) 86
PspGI CCWGG 1 cut(s) 86
PspN4I GGNNCC 2 cut(s) 80, 92
PspPI GGNCC 1 cut(s) 240
PspPPI RGGWCCY 1 cut(s) 240
PstI CTGCAG 1 cut(s) 12
PstNI CAGNNNCTG 1 cut(s) 413
PsuI RGATCY 2 cut(s) 90, 441
PvuII CAGCTG 1 cut(s) 413
RsaI GTAC 1 cut(s) 394
RsaNI GTAC 1 cut(s) 393
RseI CAYNNNNRTG 1 cut(s) 210
SacI GAGCTC 1 cut(s) 345
SaqAI TTAA 2 cut(s) 153, 372
SatI GCNGC 2 cut(s) 408, 411
Sau3AI GATC 4 cut(s) 12, 90, 433, 441
Sau96I GGNCC 1 cut(s) 240
ScrFI CCNGG 1 cut(s) 88
SduI GDGCHC 1 cut(s) 345
SetI ASST 6 cut(s) 80, 183, 214, 245, 345, 415
SfaNI GCATC 1 cut(s) 394
SfcI CTRYAG 1 cut(s) 8
SfuI TTCGAA 1 cut(s) 230
SinI GGWCC 1 cut(s) 240
SmiMI CAYNNNNRTG 1 cut(s) 210
Sse9I AATT 3 cut(s) 30, 52, 112
SsiI CCGC 1 cut(s) 94
SspMI CTAG 1 cut(s) 445
SstI GAGCTC 1 cut(s) 345
StyD4I CCNGG 1 cut(s) 86
StyI CCWWGG 1 cut(s) 74
TaaI ACNGT 2 cut(s) 192, 202
TaqI TCGA 2 cut(s) 106, 230
TasI AATT 3 cut(s) 30, 52, 112
TfiI GAWTC 3 cut(s) 44, 131, 221
Tru1I TTAA 2 cut(s) 153, 372
Tru9I TTAA 2 cut(s) 153, 372
TscAI CASTG 4 cut(s) 104, 195, 205, 361
TseI GCWGC 2 cut(s) 407, 410
TspDTI ATGAA 3 cut(s) 65, 184, 194
TspGWI ACGGA 1 cut(s) 348
TspRI CASTG 4 cut(s) 104, 195, 205, 361
Van91I CCANNNNNTGG 1 cut(s) 389
VpaK11BI GGWCC 1 cut(s) 240
XapI RAATTY 1 cut(s) 52
XceI RCATGY 1 cut(s) 330
XspI CTAG 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.