Rh6DG225500

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000348
Physical Location & Seq
Reverse (-)
40353668 .. 40355141
1474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG225500.1

Sequence Viewer

Length: 258 bp
ATGAAGTTCGTTGTGTGCAAAGGAAGCTGTTGTTGGAATCCCTTGCAAATAAATGAACTTCCTAGTGGCACAACCAGGTTCTCATCAAAATTTGTTTCAATCGAAGAATCAGGCTACTTTAAGCTTCTGCATCTTGCTGATGGAACCATCCTCAAAGACAAAGGGAAATCCGCTATTAGAGGTCAGGCAAACTTCAAGAGCAATCATGGATTTGATCCCATATCCATGCGGGATGTGCGTGTCCGGAAAGATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

85

Amino Acids

9.57

Weight (kDa)

9.55

Isoelectric Point (pI)

24.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 243
AciI CCGC 2 cut(s) 171, 229
AclWI GGATC 1 cut(s) 209
AcsI RAATTY 1 cut(s) 89
AgsI TTSAA 2 cut(s) 99, 196
AjnI CCWGG 1 cut(s) 74
AjuI GAANNNNNNNTTGG 2 cut(s) 16, 48
AluBI AGCT 2 cut(s) 27, 124
AluI AGCT 2 cut(s) 27, 124
AlwI GGATC 1 cut(s) 209
Aor13HI TCCGGA 1 cut(s) 243
ApoI RAATTY 1 cut(s) 89
BccI CCATC 2 cut(s) 134, 155
BciT130I CCWGG 1 cut(s) 76
BfaI CTAG 1 cut(s) 63
Bme1390I CCNGG 1 cut(s) 76
BmiI GGNNCC 1 cut(s) 145
BmrFI CCNGG 1 cut(s) 76
BmsI GCATC 1 cut(s) 139
BsaWI WCCGGW 1 cut(s) 243
BseAI TCCGGA 1 cut(s) 243
BseBI CCWGG 1 cut(s) 76
BseGI GGATG 2 cut(s) 147, 238
BsiSI CCGG 1 cut(s) 244
Bsp13I TCCGGA 1 cut(s) 243
Bsp143I GATC 2 cut(s) 214, 250
BspACI CCGC 2 cut(s) 171, 229
BspEI TCCGGA 1 cut(s) 243
BspLI GGNNCC 1 cut(s) 145
BspPI GGATC 1 cut(s) 209
BssMI GATC 2 cut(s) 214, 250
Bst2UI CCWGG 1 cut(s) 76
BstF5I GGATG 2 cut(s) 147, 238
BstKTI GATC 2 cut(s) 217, 253
BstMBI GATC 2 cut(s) 214, 250
BstMWI GCNNNNNNNGC 2 cut(s) 24, 235
BstNI CCWGG 1 cut(s) 76
BstSCI CCNGG 1 cut(s) 74
BtsCI GGATG 2 cut(s) 147, 238
CsiI ACCWGGT 1 cut(s) 74
CviAII CATG 2 cut(s) 206, 226
CviJI RGCY 3 cut(s) 27, 114, 124
CviKI_1 RGCY 3 cut(s) 27, 114, 124
DpnI GATC 2 cut(s) 216, 252
DpnII GATC 2 cut(s) 214, 250
EcoRII CCWGG 1 cut(s) 74
FaeI CATG 2 cut(s) 209, 229
FaiI YATR 3 cut(s) 207, 221, 227
FatI CATG 2 cut(s) 205, 225
FauI CCCGC 1 cut(s) 222
FokI GGATG 2 cut(s) 134, 245
FspBI CTAG 1 cut(s) 63
HapII CCGG 1 cut(s) 244
Hin1II CATG 2 cut(s) 209, 229
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 2 cut(s) 37, 107
HpaII CCGG 1 cut(s) 244
Hpy188III TCNNGA 2 cut(s) 196, 244
HpyCH4V TGCA 3 cut(s) 18, 46, 130
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 235
Hsp92II CATG 2 cut(s) 209, 229
Kpn2I TCCGGA 1 cut(s) 243
Kzo9I GATC 2 cut(s) 214, 250
LpnPI CCDG 4 cut(s) 61, 88, 96, 170
LweI GCATC 1 cut(s) 139
MabI ACCWGGT 1 cut(s) 74
MaeI CTAG 1 cut(s) 63
MalI GATC 2 cut(s) 216, 252
MboI GATC 2 cut(s) 214, 250
MboII GAAGA 1 cut(s) 116
MluCI AATT 1 cut(s) 89
MmeI TCCRAC 1 cut(s) 14
MnlI CCTC 2 cut(s) 161, 173
MroI TCCGGA 1 cut(s) 243
MseI TTAA 1 cut(s) 120
MslI CAYNNNNRTG 1 cut(s) 224
MspI CCGG 1 cut(s) 244
MspR9I CCNGG 1 cut(s) 76
MvaI CCWGG 1 cut(s) 76
MwoI GCNNNNNNNGC 2 cut(s) 24, 235
NdeII GATC 2 cut(s) 214, 250
NlaIII CATG 2 cut(s) 209, 229
NlaIV GGNNCC 1 cut(s) 145
PfeI GAWTC 2 cut(s) 37, 107
Psp6I CCWGG 1 cut(s) 74
PspGI CCWGG 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 145
RseI CAYNNNNRTG 1 cut(s) 224
SaqAI TTAA 1 cut(s) 120
Sau3AI GATC 2 cut(s) 214, 250
ScrFI CCNGG 1 cut(s) 76
SetI ASST 4 cut(s) 29, 80, 126, 184
SexAI ACCWGGT 1 cut(s) 74
SfaNI GCATC 1 cut(s) 139
SmiMI CAYNNNNRTG 1 cut(s) 224
Sse9I AATT 1 cut(s) 89
SsiI CCGC 2 cut(s) 171, 229
SspMI CTAG 1 cut(s) 63
StyD4I CCNGG 1 cut(s) 74
TaqI TCGA 1 cut(s) 102
TasI AATT 1 cut(s) 89
TfiI GAWTC 2 cut(s) 37, 107
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TspDTI ATGAA 2 cut(s) 17, 69
XapI RAATTY 1 cut(s) 89
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.