Rmu_sc0002777.1_g000006

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002777.1
OG0000348
Physical Location & Seq
Reverse (-)
18760 .. 22624
3865 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002777.1_g000006.1.cds

Sequence Viewer

Length: 1482 bp
atggttctgggcttgagaacacgcgcgtgttggagcaggcgtgctggggtagcagcagcaacaagtggcagcaaacggcggcagcagcaaaccgcaggttctgcagcagttttggatagcagcaagcagcagtttctgcagcaggggcacgtaggtgctgcaggggcaggtgtgcaagtgaggctagcgtgggctaggagctgcggctggaggttttcggcagttttacttattcaagtttcaatggaagtagtagaagaaattgtgattgttggagctggaattgctggcctcacaacttccttaggacttcacaggctgggaattcggagcttagtgttggaaacatctgagagtttgaggacgactggatttgcattctcaacatggacaaatgcctggaaggccttggatgccattggaattggggaatctcttcggagacaacacgagacacttcataggaatgttacttactcaacagtttctgggcttccagtgtttgagatgtcactgaaggacaagggaaaacaaggagaccatgaagttcgttgcgtgcagaggaagttgttgttggaagcccttgcaaatgaacttccaagtggcacaatcaggttctcctccaaggtggtttccattgaggaatcaggctactttaagctgctgcatcttgctgatggaaccatcctcaaggccaaggtcttggttgggtgtgatggagtgaactctgtggtggcgaaatggctgggcttcaagccaccggcctttacagggagacatggtataagaggtagtgcgaactacaagaacagtcatgggtttgatcccaacttcatgcagttctttggcaatggtgttagatctggtgccatcccttgtgatgataaaacagtttattggttcttcacttggactccaaccgaccaagagaaagagctagagaagaacccagctgagatgaagcaatttatgctgagcaagctgggaaatatacctgatgaaataaaggctgtcattggaaacactgaattcaatgcttttgtttcctctcctttgagatttaggcatccatgggagcttctttggggaaatattagcaaaggcaatgtttgtgtagctggagatgcgctccatcctatgaccccggaccttggccaaggaggctgctctgcaatagaagacggtgttgtgttggcaagatgtcttggtgaggccttgctgaaaaactcaaggcaagaaatgaaaggtaaaagtgaacaaggaaaggaggaatataagaaaattgagatggggttgaataagtttgccaatgagaggagatggagaggcattgacctgattagtagaggttatatgattgctttaatgcaagggagtgaaggtaaaatgatgtctaccttgaacaaatatttggttccaattctagctaggtggctgctacagaaggccgattttgattgtggaaagctcagcagcatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

493

Amino Acids

54.17

Weight (kDa)

9.43

Isoelectric Point (pI)

41.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 158
Acc36I ACCTGC 2 cut(s) 86, 158
AccB1I GGYRCC 1 cut(s) 866
AccI GTMKAC 1 cut(s) 1394
AccII CGCG 2 cut(s) 24, 26
AciI CCGC 3 cut(s) 79, 93, 204
AclWI GGATC 1 cut(s) 818
AcoI YGGCCR 1 cut(s) 1153
AcsI RAATTY 2 cut(s) 324, 1028
AcuI CTGAAG 1 cut(s) 536
AfiI CCNNNNNNNGG 3 cut(s) 771, 1151, 1314
AgsI TTSAA 6 cut(s) 236, 243, 754, 1033, 1297, 1402
AjnI CCWGG 1 cut(s) 398
AjuI GAANNNNNNNTTGG 4 cut(s) 557, 589, 1394, 1426
AleI CACNNNNGTG 2 cut(s) 25, 153
Alw26I GTCTC 4 cut(s) 436, 446, 531, 769
AlwI GGATC 1 cut(s) 818
AlwNI CAGNNNCTG 4 cut(s) 101, 136, 488, 1479
AoxI GGCC 7 cut(s) 289, 405, 693, 762, 1153, 1212, 1446
ApoI RAATTY 2 cut(s) 324, 1028
Asp700I GAANNNNTTC 1 cut(s) 435
AspLEI GCGC 2 cut(s) 26, 1129
AspS9I GGNCC 1 cut(s) 1147
AsuC2I CCSGG 1 cut(s) 1145
AsuHPI GGTGA 1 cut(s) 1220
AsuNHI GCTAGC 1 cut(s) 184
AvaII GGWCC 1 cut(s) 1147
AxyI CCTNAGG 1 cut(s) 304
BaeGI GKGCMC 1 cut(s) 150
BalI TGGCCA 1 cut(s) 1155
BanI GGYRCC 1 cut(s) 866
BauI CACGAG 1 cut(s) 449
BbsI GAAGAC 1 cut(s) 1185
BccI CCATC 7 cut(s) 671, 692, 710, 878, 1140, 1282, 1314
BceAI ACGGC 1 cut(s) 92
BciT130I CCWGG 1 cut(s) 400
BcnI CCSGG 1 cut(s) 1145
BcoDI GTCTC 4 cut(s) 436, 446, 531, 769
BfaI CTAG 5 cut(s) 185, 195, 938, 1424, 1428
BfmI CTRYAG 4 cut(s) 102, 137, 159, 1439
BfuAI ACCTGC 2 cut(s) 86, 158
BglI GCCNNNNNGGC 2 cut(s) 404, 1161
BglII AGATCT 1 cut(s) 860
BlpI GCTNAGC 2 cut(s) 974, 1469
Bme1390I CCNGG 2 cut(s) 400, 1145
Bme18I GGWCC 1 cut(s) 1147
BmgT120I GGNCC 1 cut(s) 1147
BmiI GGNNCC 3 cut(s) 682, 868, 1416
BmrFI CCNGG 2 cut(s) 400, 1145
BmsI GCATC 4 cut(s) 403, 676, 1075, 1114
BmtI GCTAGC 1 cut(s) 188
BpiI GAAGAC 1 cut(s) 1185
BplI GAGNNNNNCTC 2 cut(s) 1113, 1145
BpmI CTGGAG 2 cut(s) 229, 1140
Bpu1102I GCTNAGC 2 cut(s) 974, 1469
BpuEI CTTGAG 3 cut(s) 34, 674, 1213
BpuMI CCSGG 1 cut(s) 1145
BsaAI YACGTR 1 cut(s) 151
BsaI GGTCTC 1 cut(s) 531
BsaJI CCNNGG 7 cut(s) 408, 624, 696, 1070, 1143, 1150, 1156
BsaXI ACNNNNNCTCC 8 cut(s) 25, 55, 766, 796, 898, 928, 1366, 1396
Bsc4I CCNNNNNNNGG 3 cut(s) 771, 1151, 1314
Bse118I RCCGGY 1 cut(s) 760
Bse1I ACTGG 2 cut(s) 373, 497
Bse21I CCTNAGG 1 cut(s) 304
Bse3DI GCAATG 2 cut(s) 856, 1111
BseBI CCWGG 1 cut(s) 400
BseDI CCNNGG 7 cut(s) 408, 624, 696, 1070, 1143, 1150, 1156
BseGI GGATG 5 cut(s) 418, 684, 870, 1066, 1132
BseLI CCNNNNNNNGG 3 cut(s) 771, 1151, 1314
BseMI GCAATG 2 cut(s) 856, 1111
BseMII CTCAG 3 cut(s) 342, 945, 965
BseNI ACTGG 2 cut(s) 373, 497
BseRI GAGGAG 2 cut(s) 610, 1330
BseSI GKGCMC 1 cut(s) 150
BseYI CCCAGC 5 cut(s) 44, 319, 745, 949, 982
BsgI GTGCAG 1 cut(s) 578
Bsh1236I CGCG 2 cut(s) 24, 26
BshFI GGCC 7 cut(s) 291, 407, 695, 764, 1155, 1214, 1448
BshNI GGYRCC 1 cut(s) 866
BsiSI CCGG 2 cut(s) 761, 1145
BslI CCNNNNNNNGG 3 cut(s) 771, 1151, 1314
BsmAI GTCTC 4 cut(s) 436, 446, 531, 769
BsmI GAATGC 1 cut(s) 377
BsnI GGCC 7 cut(s) 291, 407, 695, 764, 1155, 1214, 1448
Bso31I GGTCTC 1 cut(s) 531
Bsp1286I GDGCHC 1 cut(s) 150
Bsp143I GATC 2 cut(s) 823, 860
Bsp1720I GCTNAGC 2 cut(s) 974, 1469
Bsp19I CCATGG 1 cut(s) 1070
BspACI CCGC 3 cut(s) 79, 93, 204
BspANI GGCC 7 cut(s) 291, 407, 695, 764, 1155, 1214, 1448
BspCNI CTCAG 4 cut(s) 343, 946, 966, 1482
BspFNI CGCG 2 cut(s) 24, 26
BspLI GGNNCC 3 cut(s) 682, 868, 1416
BspMAI CTGCAG 3 cut(s) 106, 141, 163
BspMI ACCTGC 2 cut(s) 86, 158
BspOI GCTAGC 1 cut(s) 188
BspPI GGATC 1 cut(s) 818
BspT107I GGYRCC 1 cut(s) 866
BspTNI GGTCTC 1 cut(s) 531
BsrDI GCAATG 2 cut(s) 856, 1111
BsrFI RCCGGY 1 cut(s) 760
BsrI ACTGG 2 cut(s) 373, 497
BssAI RCCGGY 1 cut(s) 760
BssECI CCNNGG 7 cut(s) 408, 624, 696, 1070, 1143, 1150, 1156
BssMI GATC 2 cut(s) 823, 860
BssSI CACGAG 1 cut(s) 449
BssT1I CCWWGG 6 cut(s) 408, 624, 696, 1070, 1150, 1156
Bst2BI CACGAG 1 cut(s) 449
Bst2UI CCWGG 1 cut(s) 400
Bst4CI ACNGT 4 cut(s) 484, 812, 892, 1184
Bst6I CTCTTC 1 cut(s) 441
BstAPI GCANNNNNTGC 3 cut(s) 101, 136, 970
BstBAI YACGTR 1 cut(s) 151
BstC8I GCNNGC 7 cut(s) 38, 42, 125, 186, 289, 557, 980
BstDEI CTNAG 6 cut(s) 304, 334, 351, 954, 974, 1469
BstDSI CCRYGG 1 cut(s) 1070
BstF5I GGATG 5 cut(s) 418, 684, 870, 1066, 1132
BstFNI CGCG 2 cut(s) 24, 26
BstHHI GCGC 2 cut(s) 26, 1129
BstKTI GATC 2 cut(s) 826, 863
BstMAI GTCTC 4 cut(s) 436, 446, 531, 769
BstMBI GATC 2 cut(s) 823, 860
BstNI CCWGG 1 cut(s) 400
BstSCI CCNGG 2 cut(s) 398, 1143
BstSFI CTRYAG 4 cut(s) 102, 137, 159, 1439
BstSLI GKGCMC 1 cut(s) 150
BstUI CGCG 2 cut(s) 24, 26
BstV2I GAAGAC 1 cut(s) 1185
BstX2I RGATCY 1 cut(s) 860
BstXI CCANNNNNNTGG 1 cut(s) 703
BstYI RGATCY 1 cut(s) 860
Bsu36I CCTNAGG 1 cut(s) 304
BsuRI GGCC 7 cut(s) 291, 407, 695, 764, 1155, 1214, 1448
BtgI CCRYGG 1 cut(s) 1070
BtsCI GGATG 5 cut(s) 418, 684, 870, 1066, 1132
BtsIMutI CAGTG 3 cut(s) 504, 512, 1023
BveI ACCTGC 2 cut(s) 86, 158
Cac8I GCNNGC 7 cut(s) 38, 42, 125, 186, 289, 557, 980
CaiI CAGNNNCTG 4 cut(s) 101, 136, 488, 1479
CfoI GCGC 2 cut(s) 26, 1129
Cfr10I RCCGGY 1 cut(s) 760
Cfr13I GGNCC 1 cut(s) 1147
CviAII CATG 6 cut(s) 387, 542, 779, 815, 835, 1071
DdeI CTNAG 6 cut(s) 304, 334, 351, 954, 974, 1469
DpnI GATC 2 cut(s) 825, 862
DpnII GATC 2 cut(s) 823, 860
EaeI YGGCCR 1 cut(s) 1153
Eam1104I CTCTTC 1 cut(s) 441
EarI CTCTTC 1 cut(s) 441
Eco130I CCWWGG 6 cut(s) 408, 624, 696, 1070, 1150, 1156
Eco147I AGGCCT 2 cut(s) 407, 1214
Eco31I GGTCTC 1 cut(s) 531
Eco47I GGWCC 1 cut(s) 1147
Eco57I CTGAAG 1 cut(s) 536
Eco81I CCTNAGG 1 cut(s) 304
EcoRI GAATTC 2 cut(s) 324, 1028
EcoRII CCWGG 1 cut(s) 398
EcoT14I CCWWGG 6 cut(s) 408, 624, 696, 1070, 1150, 1156
ErhI CCWWGG 6 cut(s) 408, 624, 696, 1070, 1150, 1156
FaeI CATG 6 cut(s) 390, 545, 782, 818, 838, 1074
FatI CATG 6 cut(s) 386, 541, 778, 814, 834, 1070
FblI GTMKAC 1 cut(s) 1394
FokI GGATG 5 cut(s) 425, 671, 857, 1053, 1119
FspBI CTAG 5 cut(s) 185, 195, 938, 1424, 1428
GlaI GCGC 2 cut(s) 25, 1128
GsaI CCCAGC 5 cut(s) 48, 323, 749, 953, 986
GsuI CTGGAG 2 cut(s) 229, 1140
HaeIII GGCC 7 cut(s) 291, 407, 695, 764, 1155, 1214, 1448
HapII CCGG 2 cut(s) 761, 1145
HhaI GCGC 2 cut(s) 26, 1129
Hin1II CATG 6 cut(s) 390, 545, 782, 818, 838, 1074
Hin6I GCGC 2 cut(s) 24, 1127
HinP1I GCGC 2 cut(s) 24, 1127
HinfI GANTC 3 cut(s) 431, 644, 913
HpaII CCGG 2 cut(s) 761, 1145
HphI GGTGA 1 cut(s) 1220
Hpy166II GTNNAC 3 cut(s) 724, 1256, 1395
Hpy188I TCNGA 4 cut(s) 330, 352, 441, 1481
Hpy8I GTNNAC 3 cut(s) 724, 1256, 1395
HpyAV CCTTC 4 cut(s) 397, 511, 1373, 1438
HpyCH4III ACNGT 4 cut(s) 484, 812, 892, 1184
HpyCH4IV ACGT 1 cut(s) 150
HpyF3I CTNAG 6 cut(s) 304, 334, 351, 954, 974, 1469
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 6 cut(s) 390, 545, 782, 818, 838, 1074
HspAI GCGC 2 cut(s) 24, 1127
Kzo9I GATC 2 cut(s) 823, 860
LmnI GCTCC 6 cut(s) 33, 198, 275, 330, 1075, 1134
LweI GCATC 4 cut(s) 403, 676, 1075, 1114
MaeI CTAG 5 cut(s) 185, 195, 938, 1424, 1428
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 2 cut(s) 469, 510
MalI GATC 2 cut(s) 825, 862
MboI GATC 2 cut(s) 823, 860
MboII GAAGA 5 cut(s) 269, 428, 895, 955, 1190
MflI RGATCY 1 cut(s) 860
MhlI GDGCHC 1 cut(s) 150
MlsI TGGCCA 1 cut(s) 1155
MluCI AATT 8 cut(s) 261, 282, 324, 423, 965, 1028, 1281, 1419
MluNI TGGCCA 1 cut(s) 1155
MlyI GAGTC 1 cut(s) 907
MmeI TCCRAC 5 cut(s) 11, 253, 321, 555, 941
Mox20I TGGCCA 1 cut(s) 1155
MroXI GAANNNNTTC 1 cut(s) 435
MscI TGGCCA 1 cut(s) 1155
MseI TTAA 2 cut(s) 657, 1364
MslI CAYNNNNRTG 3 cut(s) 25, 153, 465
Msp20I TGGCCA 1 cut(s) 1155
MspA1I CMGCKG 1 cut(s) 953
MspI CCGG 2 cut(s) 761, 1145
MspR9I CCNGG 2 cut(s) 400, 1145
Mva1269I GAATGC 1 cut(s) 377
MvaI CCWGG 1 cut(s) 400
MvnI CGCG 2 cut(s) 24, 26
NciI CCSGG 1 cut(s) 1145
NcoI CCATGG 1 cut(s) 1070
NdeII GATC 2 cut(s) 823, 860
NheI GCTAGC 1 cut(s) 184
NlaIII CATG 6 cut(s) 390, 545, 782, 818, 838, 1074
NlaIV GGNNCC 3 cut(s) 682, 868, 1416
NmuCI GTSAC 1 cut(s) 510
OliI CACNNNNGTG 2 cut(s) 25, 153
PaqCI CACCTGC 1 cut(s) 158
PceI AGGCCT 2 cut(s) 407, 1214
PctI GAATGC 1 cut(s) 377
PdmI GAANNNNTTC 1 cut(s) 435
PfeI GAWTC 2 cut(s) 431, 644
PleI GAGTC 1 cut(s) 907
PpsI GAGTC 1 cut(s) 907
Ppu21I YACGTR 1 cut(s) 151
Psp6I CCWGG 1 cut(s) 398
PspFI CCCAGC 5 cut(s) 44, 319, 745, 949, 982
PspGI CCWGG 1 cut(s) 398
PspN4I GGNNCC 3 cut(s) 682, 868, 1416
PspPI GGNCC 1 cut(s) 1147
PstI CTGCAG 3 cut(s) 106, 141, 163
PstNI CAGNNNCTG 4 cut(s) 101, 136, 488, 1479
PsuI RGATCY 1 cut(s) 860
PvuII CAGCTG 1 cut(s) 953
RseI CAYNNNNRTG 3 cut(s) 25, 153, 465
SaqAI TTAA 2 cut(s) 657, 1364
Sau3AI GATC 2 cut(s) 823, 860
Sau96I GGNCC 1 cut(s) 1147
SchI GAGTC 1 cut(s) 907
ScrFI CCNGG 2 cut(s) 400, 1145
SduI GDGCHC 1 cut(s) 150
SfaNI GCATC 4 cut(s) 403, 676, 1075, 1114
SfcI CTRYAG 4 cut(s) 102, 137, 159, 1439
SinI GGWCC 1 cut(s) 1147
SmiMI CAYNNNNRTG 3 cut(s) 25, 153, 465
SmlI CTYRAG 3 cut(s) 13, 689, 1228
SmoI CTYRAG 3 cut(s) 13, 689, 1228
Sse9I AATT 8 cut(s) 261, 282, 324, 423, 965, 1028, 1281, 1419
SseBI AGGCCT 2 cut(s) 407, 1214
SsiI CCGC 3 cut(s) 79, 93, 204
SspI AATATT 2 cut(s) 1093, 1409
SspMI CTAG 5 cut(s) 185, 195, 938, 1424, 1428
StuI AGGCCT 2 cut(s) 407, 1214
StyD4I CCNGG 2 cut(s) 398, 1143
StyI CCWWGG 6 cut(s) 408, 624, 696, 1070, 1150, 1156
TaaI ACNGT 4 cut(s) 484, 812, 892, 1184
TaiI ACGT 1 cut(s) 153
TasI AATT 8 cut(s) 261, 282, 324, 423, 965, 1028, 1281, 1419
TauI GCSGC 2 cut(s) 82, 207
TfiI GAWTC 2 cut(s) 431, 644
Tru1I TTAA 2 cut(s) 657, 1364
Tru9I TTAA 2 cut(s) 657, 1364
TscAI CASTG 3 cut(s) 504, 519, 1030
TseFI GTSAC 1 cut(s) 510
Tsp45I GTSAC 1 cut(s) 510
TspDTI ATGAA 7 cut(s) 449, 558, 606, 823, 974, 1014, 1256
TspRI CASTG 3 cut(s) 504, 519, 1030
VpaK11BI GGWCC 1 cut(s) 1147
XapI RAATTY 2 cut(s) 324, 1028
XmiI GTMKAC 1 cut(s) 1394
XmnI GAANNNNTTC 1 cut(s) 435
XspI CTAG 5 cut(s) 185, 195, 938, 1424, 1428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.