Rw6G019920

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000348
Physical Location & Seq
Reverse (-)
39861008 .. 39864032
3025 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G019920.1

Sequence Viewer

Length: 1170 bp
ATGCAAGTAGTAGAGGACGTTGTGATTGTGGGAGCTGGAATTTCTGGCCTCACAACCGCCCTGGGACTTCACAGGCTGGGCATTAGGAGCTTAGTGCTGGAATCGTTTGATAGCTTGAGGATAACAGGGTTTGCACTCGGAATATGGACTAATGCGTGGAGGGCTTTAGATGCCATTGGTGTTGGTGATCATTTACGGCAGCAACATCACACTGTTGTTGGGAATGTGGTTTTCTCGAGAATTTCAGGGCTTCAGATGTTTAAGGTGTCATTTAAGGCGAAAGGAAAACATGGAGACCATGAAGTGCGTTGTGTGAAAAGGAAGTTGCTGTTGGAAGCCCTTGCAAGTGAACTTCCTAGCGGCACCATTAGGTTCTCTTCAAAGGTTGTTTCCATTGAGGAATCAGGCTACTTTAAGCTGGTGCATCTTGCTGACGGAACCATCCTCAAAGCCAAGGTTTTGGTTGGATGTGATGGAGTAAACTCAGTGGTTGCAAAATGGCTGGGTTTCAAGCCGCCGGTCTTTACAGGAAGATCTGCCATTCGAGGTTGTGCTGAGTTCAAGAGCAGCCATGAGTTTGATCCCATGTTAATGCAGTACGTTGGGAATGGTGTTAGATCTGGTACCGTTCCTTGTGATGATAAAAATGTTTACTGGTTCTTCAGTTGGTCTCCCTCCAGCCAAGAGAAAGAGCTAGAAGGAAACCCAGCTCAGTTGAAGCAATATATGTTAAGCAAGCTCGGGAAGGTGTCAGATGAAGTAAGGGCTGTTGTGGAAAACACTAATTTGGATGCTTTTATATCCTCTCCCTTGAGATATAGGCATCCTTGGGAGCTTCTTTGGGGAAATATTAGCAAAGGTACTGTATGTAACATTGCACAAGGCGGCTGTGCTGCATTAGAGGACGGTGTTGTATTAGCAAGGTGTCTTGGTGAGGCCTTGTTGAAGAATCGGAGGCAAGAAATTAGAAATGAAGGTGAACAAGGAAAAGAGGAATATAAAATGATTGAAAGAGGGTTGAATAAGTATGCCACTTATGTGGTTGGTTTTATACAGGATGCTCATGGAAAAATAATGACTTTCTTGAGGAACAAGTTTTTTACTCCAATCCTGGCTGGGTTGCTGTTGAAGAAGGCTGATTATGATTGTGGTAAGCTCAGAAGCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

389

Amino Acids

42.98

Weight (kDa)

9.2

Isoelectric Point (pI)

34.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 6 - 311 1.1e-18 FAD binding domain
DAO PF01266 6 - 56 3e-06 FAD dependent oxidoreductase
Lycopene_cycl PF05834 6 - 196 2.6e-06 Lycopene cyclase protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 623
AccB1I GGYRCC 2 cut(s) 362, 623
AciI CCGC 4 cut(s) 57, 360, 515, 885
AclWI GGATC 1 cut(s) 575
AcsI RAATTY 2 cut(s) 39, 240
AcuI CTGAAG 2 cut(s) 236, 646
AfaI GTAC 3 cut(s) 599, 625, 862
AgsI TTSAA 8 cut(s) 381, 511, 562, 718, 946, 1010, 1021, 1129
AjnI CCWGG 2 cut(s) 60, 1110
AjuI GAANNNNNNNTTGG 2 cut(s) 314, 346
AleI CACNNNNGTG 1 cut(s) 1037
Alw26I GTCTC 2 cut(s) 288, 675
AlwI GGATC 1 cut(s) 575
Ama87I CYCGRG 2 cut(s) 235, 740
AoxI GGCC 2 cut(s) 46, 936
ApeKI GCWGC 3 cut(s) 199, 567, 893
ApoI RAATTY 2 cut(s) 39, 240
Asp718I GGTACC 1 cut(s) 623
AsuHPI GGTGA 3 cut(s) 197, 944, 989
AvaI CYCGRG 2 cut(s) 235, 740
BanI GGYRCC 2 cut(s) 362, 623
BbvI GCAGC 3 cut(s) 211, 579, 880
BccI CCATC 2 cut(s) 449, 467
BceAI ACGGC 1 cut(s) 212
BciT130I CCWGG 2 cut(s) 62, 1112
BclI TGATCA 1 cut(s) 187
BcoDI GTCTC 2 cut(s) 288, 675
BfaI CTAG 2 cut(s) 357, 695
BglII AGATCT 2 cut(s) 533, 617
BisI GCNGC 6 cut(s) 200, 361, 515, 568, 886, 894
BlsI GCNGC 6 cut(s) 201, 362, 516, 569, 887, 895
Bme1390I CCNGG 2 cut(s) 62, 1112
BmeT110I CYCGRG 2 cut(s) 235, 740
BmiI GGNNCC 3 cut(s) 364, 439, 625
BmrFI CCNGG 2 cut(s) 62, 1112
BmsI GCATC 5 cut(s) 160, 433, 781, 832, 1048
BpmI CTGGAG 1 cut(s) 661
BpuEI CTTGAG 3 cut(s) 136, 832, 1105
BsaI GGTCTC 2 cut(s) 288, 675
BsaJI CCNNGG 4 cut(s) 60, 61, 453, 827
Bse118I RCCGGY 1 cut(s) 517
Bse1I ACTGG 1 cut(s) 659
Bse3DI GCAATG 1 cut(s) 873
BseBI CCWGG 2 cut(s) 62, 1112
BseDI CCNNGG 4 cut(s) 60, 61, 453, 827
BseGI GGATG 5 cut(s) 441, 473, 796, 823, 1063
BseMI GCAATG 1 cut(s) 873
BseMII CTCAG 3 cut(s) 498, 546, 725
BseNI ACTGG 1 cut(s) 659
BseXI GCAGC 3 cut(s) 211, 579, 880
BseYI CCCAGC 4 cut(s) 76, 502, 706, 1115
BshFI GGCC 2 cut(s) 48, 938
BshNI GGYRCC 2 cut(s) 362, 623
BsiHKCI CYCGRG 2 cut(s) 235, 740
BsiSI CCGG 1 cut(s) 518
BslFI GGGAC 1 cut(s) 78
BsmAI GTCTC 2 cut(s) 288, 675
BsmFI GGGAC 1 cut(s) 78
BsnI GGCC 2 cut(s) 48, 938
Bso31I GGTCTC 2 cut(s) 288, 675
BsoBI CYCGRG 2 cut(s) 235, 740
Bsp143I GATC 4 cut(s) 187, 533, 580, 617
BspACI CCGC 4 cut(s) 57, 360, 515, 885
BspANI GGCC 2 cut(s) 48, 938
BspCNI CTCAG 4 cut(s) 497, 547, 724, 1170
BspLI GGNNCC 3 cut(s) 364, 439, 625
BspPI GGATC 1 cut(s) 575
BspT107I GGYRCC 2 cut(s) 362, 623
BspTNI GGTCTC 2 cut(s) 288, 675
BsrDI GCAATG 1 cut(s) 873
BsrFI RCCGGY 1 cut(s) 517
BsrI ACTGG 1 cut(s) 659
BssAI RCCGGY 1 cut(s) 517
BssECI CCNNGG 4 cut(s) 60, 61, 453, 827
BssMI GATC 4 cut(s) 187, 533, 580, 617
BssT1I CCWWGG 2 cut(s) 453, 827
Bst2UI CCWGG 2 cut(s) 62, 1112
Bst4CI ACNGT 4 cut(s) 214, 628, 865, 908
Bst6I CTCTTC 1 cut(s) 382
BstC8I GCNNGC 1 cut(s) 737
BstDEI CTNAG 5 cut(s) 91, 484, 555, 711, 1157
BstF5I GGATG 5 cut(s) 441, 473, 796, 823, 1063
BstKTI GATC 4 cut(s) 190, 536, 583, 620
BstMAI GTCTC 2 cut(s) 288, 675
BstMBI GATC 4 cut(s) 187, 533, 580, 617
BstMWI GCNNNNNNNGC 3 cut(s) 87, 161, 170
BstNI CCWGG 2 cut(s) 62, 1112
BstSCI CCNGG 2 cut(s) 60, 1110
BstV1I GCAGC 3 cut(s) 211, 579, 880
BstX2I RGATCY 2 cut(s) 533, 617
BstXI CCANNNNNNTGG 2 cut(s) 460, 1039
BstYI RGATCY 2 cut(s) 533, 617
BsuRI GGCC 2 cut(s) 48, 938
BtsCI GGATG 5 cut(s) 441, 473, 796, 823, 1063
BtsIMutI CAGTG 2 cut(s) 210, 492
Cac8I GCNNGC 1 cut(s) 737
Cfr10I RCCGGY 1 cut(s) 517
Csp6I GTAC 3 cut(s) 598, 624, 861
CviAII CATG 5 cut(s) 290, 299, 572, 586, 1064
CviQI GTAC 3 cut(s) 598, 624, 861
DdeI CTNAG 5 cut(s) 91, 484, 555, 711, 1157
DpnI GATC 4 cut(s) 189, 535, 582, 619
DpnII GATC 4 cut(s) 187, 533, 580, 617
Eam1104I CTCTTC 1 cut(s) 382
EarI CTCTTC 1 cut(s) 382
Eco130I CCWWGG 2 cut(s) 453, 827
Eco147I AGGCCT 1 cut(s) 938
Eco31I GGTCTC 2 cut(s) 288, 675
Eco57I CTGAAG 2 cut(s) 236, 646
Eco88I CYCGRG 2 cut(s) 235, 740
EcoRII CCWGG 2 cut(s) 60, 1110
EcoT14I CCWWGG 2 cut(s) 453, 827
ErhI CCWWGG 2 cut(s) 453, 827
FaeI CATG 5 cut(s) 293, 302, 575, 589, 1067
FaqI GGGAC 1 cut(s) 78
FatI CATG 5 cut(s) 289, 298, 571, 585, 1063
FbaI TGATCA 1 cut(s) 187
Fnu4HI GCNGC 6 cut(s) 200, 361, 515, 568, 886, 894
FokI GGATG 5 cut(s) 428, 480, 803, 810, 1070
Fsp4HI GCNGC 6 cut(s) 200, 361, 515, 568, 886, 894
FspBI CTAG 2 cut(s) 357, 695
GluI GCNGC 6 cut(s) 200, 361, 515, 568, 886, 894
GsaI CCCAGC 4 cut(s) 80, 506, 710, 1119
GsuI CTGGAG 1 cut(s) 661
HaeIII GGCC 2 cut(s) 48, 938
HapII CCGG 1 cut(s) 518
Hin1II CATG 5 cut(s) 293, 302, 575, 589, 1067
HinfI GANTC 3 cut(s) 101, 401, 949
HpaII CCGG 1 cut(s) 518
HphI GGTGA 3 cut(s) 197, 944, 989
Hpy166II GTNNAC 4 cut(s) 350, 481, 652, 980
Hpy188I TCNGA 5 cut(s) 140, 255, 754, 954, 1160
Hpy188III TCNNGA 5 cut(s) 235, 237, 562, 742, 1084
Hpy8I GTNNAC 4 cut(s) 350, 481, 652, 980
HpyAV CCTTC 4 cut(s) 692, 739, 968, 1126
HpyCH4III ACNGT 4 cut(s) 214, 628, 865, 908
HpyCH4IV ACGT 2 cut(s) 18, 600
HpyCH4V TGCA 8 cut(s) 4, 134, 344, 424, 494, 595, 878, 896
HpyF10VI GCNNNNNNNGC 3 cut(s) 87, 161, 170
HpyF3I CTNAG 5 cut(s) 91, 484, 555, 711, 1157
HpySE526I ACGT 2 cut(s) 18, 600
Hsp92II CATG 5 cut(s) 293, 302, 575, 589, 1067
KpnI GGTACC 1 cut(s) 627
Ksp22I TGATCA 1 cut(s) 187
Kzo9I GATC 4 cut(s) 187, 533, 580, 617
LmnI GCTCC 3 cut(s) 32, 87, 832
Lsp1109I GCAGC 3 cut(s) 211, 579, 880
LweI GCATC 5 cut(s) 160, 433, 781, 832, 1048
MaeI CTAG 2 cut(s) 357, 695
MaeII ACGT 2 cut(s) 18, 600
MaeIII GTNAC 1 cut(s) 869
MalI GATC 4 cut(s) 189, 535, 582, 619
MboI GATC 4 cut(s) 187, 533, 580, 617
MboII GAAGA 5 cut(s) 369, 543, 652, 958, 1141
MflI RGATCY 2 cut(s) 533, 617
MluCI AATT 4 cut(s) 39, 240, 784, 963
MmeI TCCRAC 2 cut(s) 312, 445
MseI TTAA 6 cut(s) 261, 273, 414, 590, 731, 1168
MslI CAYNNNNRTG 2 cut(s) 590, 1037
MspI CCGG 1 cut(s) 518
MspR9I CCNGG 2 cut(s) 62, 1112
MvaI CCWGG 2 cut(s) 62, 1112
MwoI GCNNNNNNNGC 3 cut(s) 87, 161, 170
NdeII GATC 4 cut(s) 187, 533, 580, 617
NlaIII CATG 5 cut(s) 293, 302, 575, 589, 1067
NlaIV GGNNCC 3 cut(s) 364, 439, 625
OliI CACNNNNGTG 1 cut(s) 1037
PaeR7I CTCGAG 1 cut(s) 235
PasI CCCWGGG 1 cut(s) 61
PceI AGGCCT 1 cut(s) 938
PfeI GAWTC 3 cut(s) 101, 401, 949
PkrI GCNGC 6 cut(s) 201, 362, 516, 569, 887, 895
Psp6I CCWGG 2 cut(s) 60, 1110
PspFI CCCAGC 4 cut(s) 76, 502, 706, 1115
PspGI CCWGG 2 cut(s) 60, 1110
PspN4I GGNNCC 3 cut(s) 364, 439, 625
PsuI RGATCY 2 cut(s) 533, 617
RsaI GTAC 3 cut(s) 599, 625, 862
RsaNI GTAC 3 cut(s) 598, 624, 861
RseI CAYNNNNRTG 2 cut(s) 590, 1037
SaqAI TTAA 6 cut(s) 261, 273, 414, 590, 731, 1168
SatI GCNGC 6 cut(s) 200, 361, 515, 568, 886, 894
Sau3AI GATC 4 cut(s) 187, 533, 580, 617
ScrFI CCNGG 2 cut(s) 62, 1112
SfaNI GCATC 5 cut(s) 160, 433, 781, 832, 1048
Sfr274I CTCGAG 1 cut(s) 235
SlaI CTCGAG 1 cut(s) 235
SmiMI CAYNNNNRTG 2 cut(s) 590, 1037
SmlI CTYRAG 4 cut(s) 115, 235, 811, 1084
SmoI CTYRAG 4 cut(s) 115, 235, 811, 1084
Sse9I AATT 4 cut(s) 39, 240, 784, 963
SseBI AGGCCT 1 cut(s) 938
SsiI CCGC 4 cut(s) 57, 360, 515, 885
SspI AATATT 1 cut(s) 850
SspMI CTAG 2 cut(s) 357, 695
StuI AGGCCT 1 cut(s) 938
StyD4I CCNGG 2 cut(s) 60, 1110
StyI CCWWGG 2 cut(s) 453, 827
TaaI ACNGT 4 cut(s) 214, 628, 865, 908
TaiI ACGT 2 cut(s) 21, 603
TaqI TCGA 2 cut(s) 236, 544
TasI AATT 4 cut(s) 39, 240, 784, 963
TauI GCSGC 3 cut(s) 363, 517, 888
TfiI GAWTC 3 cut(s) 101, 401, 949
Tru1I TTAA 6 cut(s) 261, 273, 414, 590, 731, 1168
Tru9I TTAA 6 cut(s) 261, 273, 414, 590, 731, 1168
TscAI CASTG 2 cut(s) 217, 492
TseI GCWGC 3 cut(s) 199, 567, 893
TspDTI ATGAA 3 cut(s) 315, 771, 987
TspGWI ACGGA 1 cut(s) 450
TspRI CASTG 2 cut(s) 217, 492
XapI RAATTY 2 cut(s) 39, 240
XhoI CTCGAG 1 cut(s) 235
XspI CTAG 2 cut(s) 357, 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.