Rmu_sc0000258.1_g000073

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000258.1
OG0000348
Physical Location & Seq
Reverse (-)
323026 .. 323926
901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000258.1_g000073.1.cds

Sequence Viewer

Length: 429 bp
atgatttgcagaggagaccatgaagttcgttgtgtgcaaaggaagctgttgttggaatcccttgcaaatgatcttcctagtggcacaaccaggttctcatcaaaagttgtttcaatcgaagaatcaggctactttaagcttctacatcttgctgatggaaccatccttaaagtcttggttgggtgtgatggagtcaactctgtggttgccaaatggctaaacttcaagcagctatcttttacaggaaaatccgatattagaggtcaggcaaacttcaagagcaatcatgggtttgatcccaaatccgtgcggttcttcaggcatggtgttagatctggtgtcatcccttgggagctaaggaaagttgatgaccttgttgaacagatttctgtggcctttaatccccaagttgctgttgaaaaaggctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

142

Amino Acids

15.82

Weight (kDa)

9.3

Isoelectric Point (pI)

17.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 310
AclWI GGATC 1 cut(s) 290
AcuI CTGAAG 1 cut(s) 301
AgsI TTSAA 5 cut(s) 114, 226, 277, 380, 419
AjnI CCWGG 1 cut(s) 89
AjuI GAANNNNNNNTTGG 2 cut(s) 35, 67
AluBI AGCT 4 cut(s) 46, 139, 232, 355
AluI AGCT 4 cut(s) 46, 139, 232, 355
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 290
AoxI GGCC 1 cut(s) 393
ApeKI GCWGC 1 cut(s) 229
BbvI GCAGC 1 cut(s) 241
BccI CCATC 3 cut(s) 149, 170, 182
BciT130I CCWGG 1 cut(s) 91
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 1 cut(s) 78
BglII AGATCT 1 cut(s) 332
BisI GCNGC 1 cut(s) 230
BlsI GCNGC 1 cut(s) 231
Bme1390I CCNGG 1 cut(s) 91
BmiI GGNNCC 1 cut(s) 160
BmrFI CCNGG 1 cut(s) 91
Bpu10I CCTNAGC 1 cut(s) 356
BsaI GGTCTC 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 347
BseBI CCWGG 1 cut(s) 91
BseDI CCNNGG 1 cut(s) 347
BseGI GGATG 2 cut(s) 162, 342
BseRI GAGGAG 1 cut(s) 27
BseXI GCAGC 1 cut(s) 241
BshFI GGCC 1 cut(s) 395
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 1 cut(s) 395
Bso31I GGTCTC 1 cut(s) 9
Bsp143I GATC 3 cut(s) 70, 295, 332
BspACI CCGC 1 cut(s) 310
BspANI GGCC 1 cut(s) 395
BspLI GGNNCC 1 cut(s) 160
BspPI GGATC 1 cut(s) 290
BspTNI GGTCTC 1 cut(s) 9
BssECI CCNNGG 1 cut(s) 347
BssMI GATC 3 cut(s) 70, 295, 332
BssT1I CCWWGG 1 cut(s) 347
Bst2UI CCWGG 1 cut(s) 91
BstDEI CTNAG 1 cut(s) 356
BstF5I GGATG 2 cut(s) 162, 342
BstKTI GATC 3 cut(s) 73, 298, 335
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 3 cut(s) 70, 295, 332
BstMWI GCNNNNNNNGC 1 cut(s) 43
BstNI CCWGG 1 cut(s) 91
BstSCI CCNGG 1 cut(s) 89
BstV1I GCAGC 1 cut(s) 241
BstX2I RGATCY 1 cut(s) 332
BstYI RGATCY 1 cut(s) 332
BsuRI GGCC 1 cut(s) 395
BtsCI GGATG 2 cut(s) 162, 342
CsiI ACCWGGT 1 cut(s) 89
CviAII CATG 3 cut(s) 20, 287, 323
CviJI RGCY 8 cut(s) 46, 129, 139, 217, 232, 355, 395, 426
CviKI_1 RGCY 8 cut(s) 46, 129, 139, 217, 232, 355, 395, 426
DdeI CTNAG 1 cut(s) 356
DpnI GATC 3 cut(s) 72, 297, 334
DpnII GATC 3 cut(s) 70, 295, 332
Eco130I CCWWGG 1 cut(s) 347
Eco31I GGTCTC 1 cut(s) 9
Eco57I CTGAAG 1 cut(s) 301
EcoRII CCWGG 1 cut(s) 89
EcoT14I CCWWGG 1 cut(s) 347
ErhI CCWWGG 1 cut(s) 347
FaeI CATG 3 cut(s) 23, 290, 326
FaiI YATR 3 cut(s) 21, 288, 324
FatI CATG 3 cut(s) 19, 286, 322
Fnu4HI GCNGC 1 cut(s) 230
FokI GGATG 2 cut(s) 149, 329
Fsp4HI GCNGC 1 cut(s) 230
FspBI CTAG 1 cut(s) 78
GluI GCNGC 1 cut(s) 230
HaeIII GGCC 1 cut(s) 395
Hin1II CATG 3 cut(s) 23, 290, 326
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HindIII AAGCTT 1 cut(s) 137
HinfI GANTC 3 cut(s) 56, 122, 192
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 1 cut(s) 253
Hpy188III TCNNGA 1 cut(s) 277
Hpy8I GTNNAC 1 cut(s) 196
HpyCH4V TGCA 3 cut(s) 9, 37, 65
HpyF10VI GCNNNNNNNGC 1 cut(s) 43
HpyF3I CTNAG 1 cut(s) 356
Hsp92II CATG 3 cut(s) 23, 290, 326
Kzo9I GATC 3 cut(s) 70, 295, 332
LmnI GCTCC 1 cut(s) 352
LpnPI CCDG 7 cut(s) 76, 103, 111, 228, 251, 304, 321
Lsp1109I GCAGC 1 cut(s) 241
MabI ACCWGGT 1 cut(s) 89
MaeI CTAG 1 cut(s) 78
MalI GATC 3 cut(s) 72, 297, 334
MboI GATC 3 cut(s) 70, 295, 332
MboII GAAGA 3 cut(s) 65, 131, 307
MflI RGATCY 1 cut(s) 332
MlyI GAGTC 1 cut(s) 201
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 2 cut(s) 5, 254
MseI TTAA 3 cut(s) 135, 168, 399
MspR9I CCNGG 1 cut(s) 91
MvaI CCWGG 1 cut(s) 91
MwoI GCNNNNNNNGC 1 cut(s) 43
NdeII GATC 3 cut(s) 70, 295, 332
NlaIII CATG 3 cut(s) 23, 290, 326
NlaIV GGNNCC 1 cut(s) 160
PfeI GAWTC 2 cut(s) 56, 122
PkrI GCNGC 1 cut(s) 231
PleI GAGTC 1 cut(s) 200
PpsI GAGTC 1 cut(s) 200
Psp6I CCWGG 1 cut(s) 89
PspGI CCWGG 1 cut(s) 89
PspN4I GGNNCC 1 cut(s) 160
PsuI RGATCY 1 cut(s) 332
SaqAI TTAA 3 cut(s) 135, 168, 399
SatI GCNGC 1 cut(s) 230
Sau3AI GATC 3 cut(s) 70, 295, 332
SchI GAGTC 1 cut(s) 201
ScrFI CCNGG 1 cut(s) 91
SetI ASST 7 cut(s) 48, 95, 141, 234, 265, 357, 375
SexAI ACCWGGT 1 cut(s) 89
SsiI CCGC 1 cut(s) 310
SspMI CTAG 1 cut(s) 78
StyD4I CCNGG 1 cut(s) 89
StyI CCWWGG 1 cut(s) 347
TaqI TCGA 1 cut(s) 117
TfiI GAWTC 2 cut(s) 56, 122
Tru1I TTAA 3 cut(s) 135, 168, 399
Tru9I TTAA 3 cut(s) 135, 168, 399
TseI GCWGC 1 cut(s) 229
TspDTI ATGAA 1 cut(s) 36
TspGWI ACGGA 1 cut(s) 295
XspI CTAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.