Rroxscaffold_7G00189770

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000348
Physical Location & Seq
Forward (+)
29596619 .. 29599969
3351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00189770.1

Sequence Viewer

Length: 1242 bp
ATGCAAGTAGTAGAGGACGTTGTGATTGTGGGAGCTGGAATTTCTGGCCTCACAACCGCCCTGGGACTTCACAGGCTGGGCATTAGGAGCTTAGTGCTGGAATCGTTTGATAGCTTGAGGATAACAGGGTTTGCACTCACAACATGGACTAATGCGTGGAAGGCTTTAGACGCCATTGGTGTTGGTGATTATTTACGGCAGCAACACCTGACTCTTCTTGGAAATGTGGTTTTCTCGAGAATTTCAGCGCTTCAGACGTTTGAGATGTCATTTAAGGAGAAAGGAAAACATGGAGACCATGAAAATCGTTGTGTGAAAAGGAAGTTGCTGTTGGAAGCCCTTGCAAGTGAACTTCCTAGTGGCACCATTAGGTTCTCTTCAAAGGTTGTTTCCATTGAGGAATCAGGCTACTTTAAGCTGGTGCGTCTTGCTGACGGAACCATCCTCAAAGCCAAGGTTTTGGTTGGATGTGATGGAGTAAACTCAGTGGTTGCAAAATGGCTGGGCTTCAAGCAGCCGGTCTTTACAGGAAGATCTGCCATTCGAGGTTGTGCTGAGTTCAAGAGCAGCCATGAGTTTGATCCCATGCTCATGCAGTACCTTGGGAATGGTGTTAGATCTGGTACCATTCCTTGTGATGATAAAAATGTTTACTGGTTCTTCACTTGGTCTCCCTCCAGCCAAGAGAAAGAGCTAGAAGAAAACCCAGCTCAGTTGAAGCAATATGTGTTAAGCAAGCTCGGAAAGGTATCAGATGAAGTACGGGCCGTTTTGGAAAACACCGATTTGGATGCTTTTATATCCTCTCCATTGAGATATAGGCATCCTTGGGAACTTATTTGGGGAAATATTAGCAAAGGTAATGTATGTGTAGCCGGAGACGCGCTCCACCCGATGACCCCAGACATTGGACAAGGTGGCTGTGCTGCATTAGAGGACGGTGTTGTATTAGCAAGGTGTCTTGGTGAGGCTTTGTTGAACAATCGGAGCCAAGAAATTAGAGATGAAGGTGAACAAGGAAAAGAGGAATATAAAATGATTGAAAGAGGGTTGAATAAGTATGCCAGTGAGAGGAGATGGAGAAGTTTTGATCTTATTAGTACAGCTTATGTGGTTGGTTTTATACAGGAGGCTGATGGAAAAATAATGACTTTCTTGAGGGACAAGTTTTTCTCTCCAATCCTGGCCGGGTTGCTGTTGAAGAAGGCTGATTATGATTGTGGTAAGCTCAGAAGCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

413

Amino Acids

45.9

Weight (kDa)

7.57

Isoelectric Point (pI)

37.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 6 - 335 1.1e-26 FAD binding domain
Lycopene_cycl PF05834 6 - 196 4.1e-07 Lycopene cyclase protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 623
AccB1I GGYRCC 2 cut(s) 362, 623
AccB7I CCANNNNNTGG 1 cut(s) 908
AccII CGCG 1 cut(s) 884
AciI CCGC 1 cut(s) 57
AclWI GGATC 1 cut(s) 575
AcoI YGGCCR 1 cut(s) 1185
AcsI RAATTY 2 cut(s) 39, 240
AcuI CTGAAG 1 cut(s) 236
AcyI GRCGYC 1 cut(s) 171
AfaI GTAC 4 cut(s) 599, 625, 762, 1102
AfeI AGCGCT 1 cut(s) 249
AfiI CCNNNNNNNGG 2 cut(s) 908, 1071
AgsI TTSAA 8 cut(s) 381, 511, 562, 718, 979, 1043, 1054, 1201
AjnI CCWGG 2 cut(s) 60, 1182
AjuI GAANNNNNNNTTGG 2 cut(s) 314, 346
Alw26I GTCTC 3 cut(s) 288, 675, 873
AlwI GGATC 1 cut(s) 575
Ama87I CYCGRG 1 cut(s) 235
Aor51HI AGCGCT 1 cut(s) 249
AoxI GGCC 3 cut(s) 46, 765, 1185
ApeKI GCWGC 4 cut(s) 199, 514, 567, 926
ApoI RAATTY 2 cut(s) 39, 240
Asp718I GGTACC 1 cut(s) 623
AspLEI GCGC 2 cut(s) 250, 886
AspS9I GGNCC 1 cut(s) 765
AsuC2I CCSGG 1 cut(s) 1189
AsuHPI GGTGA 3 cut(s) 197, 977, 1022
AvaI CYCGRG 1 cut(s) 235
BanI GGYRCC 2 cut(s) 362, 623
BbvI GCAGC 4 cut(s) 211, 526, 579, 913
BccI CCATC 4 cut(s) 449, 467, 1071, 1130
BceAI ACGGC 2 cut(s) 212, 752
BcgI CGANNNNNNTGC 2 cut(s) 773, 807
BciT130I CCWGG 2 cut(s) 62, 1184
BcnI CCSGG 1 cut(s) 1189
BcoDI GTCTC 3 cut(s) 288, 675, 873
BfaI CTAG 2 cut(s) 357, 695
BfoI RGCGCY 1 cut(s) 251
BglII AGATCT 2 cut(s) 533, 617
BisI GCNGC 4 cut(s) 200, 515, 568, 927
BlsI GCNGC 4 cut(s) 201, 516, 569, 928
Bme1390I CCNGG 3 cut(s) 62, 1184, 1189
BmeT110I CYCGRG 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 765
BmiI GGNNCC 4 cut(s) 364, 439, 625, 989
BmrFI CCNGG 3 cut(s) 62, 1184, 1189
BmsI GCATC 2 cut(s) 781, 832
BplI GAGNNNNNCTC 2 cut(s) 870, 902
BpmI CTGGAG 1 cut(s) 661
BpuEI CTTGAG 2 cut(s) 136, 1177
BpuMI CCSGG 1 cut(s) 1189
BsaHI GRCGYC 1 cut(s) 171
BsaI GGTCTC 2 cut(s) 288, 675
BsaJI CCNNGG 5 cut(s) 60, 61, 453, 601, 827
BsaXI ACNNNNNCTCC 2 cut(s) 655, 685
Bsc4I CCNNNNNNNGG 2 cut(s) 908, 1071
Bse118I RCCGGY 1 cut(s) 517
Bse1I ACTGG 2 cut(s) 659, 1065
BseBI CCWGG 2 cut(s) 62, 1184
BseDI CCNNGG 5 cut(s) 60, 61, 453, 601, 827
BseGI GGATG 4 cut(s) 441, 473, 796, 823
BseLI CCNNNNNNNGG 2 cut(s) 908, 1071
BseMII CTCAG 3 cut(s) 498, 546, 725
BseNI ACTGG 2 cut(s) 659, 1065
BseRI GAGGAG 1 cut(s) 1087
BseXI GCAGC 4 cut(s) 211, 526, 579, 913
BseYI CCCAGC 3 cut(s) 76, 502, 706
Bsh1236I CGCG 1 cut(s) 884
BshFI GGCC 3 cut(s) 48, 767, 1187
BshNI GGYRCC 2 cut(s) 362, 623
BsiHKCI CYCGRG 1 cut(s) 235
BsiSI CCGG 3 cut(s) 518, 876, 1188
BslFI GGGAC 2 cut(s) 78, 1175
BslI CCNNNNNNNGG 2 cut(s) 908, 1071
BsmAI GTCTC 3 cut(s) 288, 675, 873
BsmBI CGTCTC 1 cut(s) 873
BsmFI GGGAC 2 cut(s) 78, 1175
BsnI GGCC 3 cut(s) 48, 767, 1187
Bso31I GGTCTC 2 cut(s) 288, 675
BsoBI CYCGRG 1 cut(s) 235
Bsp143I GATC 4 cut(s) 533, 580, 617, 1090
BspACI CCGC 1 cut(s) 57
BspANI GGCC 3 cut(s) 48, 767, 1187
BspCNI CTCAG 4 cut(s) 497, 547, 724, 1242
BspFNI CGCG 1 cut(s) 884
BspLI GGNNCC 4 cut(s) 364, 439, 625, 989
BspPI GGATC 1 cut(s) 575
BspT107I GGYRCC 2 cut(s) 362, 623
BspTNI GGTCTC 2 cut(s) 288, 675
BsrFI RCCGGY 1 cut(s) 517
BsrI ACTGG 2 cut(s) 659, 1065
BssAI RCCGGY 1 cut(s) 517
BssECI CCNNGG 5 cut(s) 60, 61, 453, 601, 827
BssMI GATC 4 cut(s) 533, 580, 617, 1090
BssNI GRCGYC 1 cut(s) 171
BssT1I CCWWGG 3 cut(s) 453, 601, 827
Bst2UI CCWGG 2 cut(s) 62, 1184
Bst4CI ACNGT 1 cut(s) 941
Bst6I CTCTTC 2 cut(s) 219, 382
BstACI GRCGYC 1 cut(s) 171
BstC8I GCNNGC 1 cut(s) 737
BstDEI CTNAG 5 cut(s) 91, 484, 555, 711, 1229
BstF5I GGATG 4 cut(s) 441, 473, 796, 823
BstFNI CGCG 1 cut(s) 884
BstH2I RGCGCY 1 cut(s) 251
BstHHI GCGC 2 cut(s) 250, 886
BstKTI GATC 4 cut(s) 536, 583, 620, 1093
BstMAI GTCTC 3 cut(s) 288, 675, 873
BstMBI GATC 4 cut(s) 533, 580, 617, 1090
BstMWI GCNNNNNNNGC 4 cut(s) 87, 161, 170, 881
BstNI CCWGG 2 cut(s) 62, 1184
BstSCI CCNGG 3 cut(s) 60, 1182, 1187
BstUI CGCG 1 cut(s) 884
BstV1I GCAGC 4 cut(s) 211, 526, 579, 913
BstX2I RGATCY 2 cut(s) 533, 617
BstXI CCANNNNNNTGG 1 cut(s) 460
BstYI RGATCY 2 cut(s) 533, 617
BsuRI GGCC 3 cut(s) 48, 767, 1187
BtsCI GGATG 4 cut(s) 441, 473, 796, 823
BtsIMutI CAGTG 2 cut(s) 492, 1072
Cac8I GCNNGC 1 cut(s) 737
CfoI GCGC 2 cut(s) 250, 886
Cfr10I RCCGGY 1 cut(s) 517
Cfr13I GGNCC 1 cut(s) 765
CseI GACGC 3 cut(s) 179, 413, 890
Csp6I GTAC 4 cut(s) 598, 624, 761, 1101
CviAII CATG 6 cut(s) 144, 290, 299, 572, 586, 592
CviQI GTAC 4 cut(s) 598, 624, 761, 1101
DdeI CTNAG 5 cut(s) 91, 484, 555, 711, 1229
DpnI GATC 4 cut(s) 535, 582, 619, 1092
DpnII GATC 4 cut(s) 533, 580, 617, 1090
EaeI YGGCCR 1 cut(s) 1185
Eam1104I CTCTTC 2 cut(s) 219, 382
EarI CTCTTC 2 cut(s) 219, 382
Eco130I CCWWGG 3 cut(s) 453, 601, 827
Eco31I GGTCTC 2 cut(s) 288, 675
Eco47III AGCGCT 1 cut(s) 249
Eco57I CTGAAG 1 cut(s) 236
Eco88I CYCGRG 1 cut(s) 235
EcoRII CCWGG 2 cut(s) 60, 1182
EcoT14I CCWWGG 3 cut(s) 453, 601, 827
ErhI CCWWGG 3 cut(s) 453, 601, 827
Esp3I CGTCTC 1 cut(s) 873
FaeI CATG 6 cut(s) 147, 293, 302, 575, 589, 595
FaqI GGGAC 2 cut(s) 78, 1175
FatI CATG 6 cut(s) 143, 289, 298, 571, 585, 591
Fnu4HI GCNGC 4 cut(s) 200, 515, 568, 927
FokI GGATG 4 cut(s) 428, 480, 803, 810
Fsp4HI GCNGC 4 cut(s) 200, 515, 568, 927
FspBI CTAG 2 cut(s) 357, 695
GlaI GCGC 2 cut(s) 249, 885
GluI GCNGC 4 cut(s) 200, 515, 568, 927
GsaI CCCAGC 3 cut(s) 80, 506, 710
GsuI CTGGAG 1 cut(s) 661
HaeII RGCGCY 1 cut(s) 251
HaeIII GGCC 3 cut(s) 48, 767, 1187
HapII CCGG 3 cut(s) 518, 876, 1188
HgaI GACGC 3 cut(s) 179, 413, 890
HhaI GCGC 2 cut(s) 250, 886
Hin1I GRCGYC 1 cut(s) 171
Hin1II CATG 6 cut(s) 147, 293, 302, 575, 589, 595
Hin6I GCGC 2 cut(s) 248, 884
HinP1I GCGC 2 cut(s) 248, 884
HindIII AAGCTT 1 cut(s) 1234
HinfI GANTC 3 cut(s) 101, 211, 401
HpaII CCGG 3 cut(s) 518, 876, 1188
HphI GGTGA 3 cut(s) 197, 977, 1022
Hpy166II GTNNAC 4 cut(s) 350, 481, 652, 1013
Hpy188I TCNGA 5 cut(s) 255, 743, 754, 987, 1232
Hpy188III TCNNGA 4 cut(s) 235, 237, 562, 1156
Hpy8I GTNNAC 4 cut(s) 350, 481, 652, 1013
HpyAV CCTTC 3 cut(s) 154, 1001, 1198
HpyCH4III ACNGT 1 cut(s) 941
HpyCH4IV ACGT 2 cut(s) 18, 257
HpyCH4V TGCA 6 cut(s) 4, 134, 344, 494, 595, 929
HpyF10VI GCNNNNNNNGC 4 cut(s) 87, 161, 170, 881
HpyF3I CTNAG 5 cut(s) 91, 484, 555, 711, 1229
HpySE526I ACGT 2 cut(s) 18, 257
Hsp92I GRCGYC 1 cut(s) 171
Hsp92II CATG 6 cut(s) 147, 293, 302, 575, 589, 595
HspAI GCGC 2 cut(s) 248, 884
KpnI GGTACC 1 cut(s) 627
Kzo9I GATC 4 cut(s) 533, 580, 617, 1090
LmnI GCTCC 4 cut(s) 32, 87, 891, 987
Lsp1109I GCAGC 4 cut(s) 211, 526, 579, 913
LweI GCATC 2 cut(s) 781, 832
MaeI CTAG 2 cut(s) 357, 695
MaeII ACGT 2 cut(s) 18, 257
MalI GATC 4 cut(s) 535, 582, 619, 1092
MboI GATC 4 cut(s) 533, 580, 617, 1090
MboII GAAGA 6 cut(s) 206, 369, 543, 652, 710, 1213
MflI RGATCY 2 cut(s) 533, 617
MluCI AATT 3 cut(s) 39, 240, 996
MlyI GAGTC 1 cut(s) 205
MmeI TCCRAC 2 cut(s) 312, 445
MseI TTAA 4 cut(s) 273, 414, 731, 1240
MslI CAYNNNNRTG 1 cut(s) 590
MspI CCGG 3 cut(s) 518, 876, 1188
MspR9I CCNGG 3 cut(s) 62, 1184, 1189
MvaI CCWGG 2 cut(s) 62, 1184
MvnI CGCG 1 cut(s) 884
MwoI GCNNNNNNNGC 4 cut(s) 87, 161, 170, 881
NciI CCSGG 1 cut(s) 1189
NdeII GATC 4 cut(s) 533, 580, 617, 1090
NlaIII CATG 6 cut(s) 147, 293, 302, 575, 589, 595
NlaIV GGNNCC 4 cut(s) 364, 439, 625, 989
PaeR7I CTCGAG 1 cut(s) 235
PasI CCCWGGG 1 cut(s) 61
PfeI GAWTC 2 cut(s) 101, 401
PflMI CCANNNNNTGG 1 cut(s) 908
PkrI GCNGC 4 cut(s) 201, 516, 569, 928
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
Psp6I CCWGG 2 cut(s) 60, 1182
PspFI CCCAGC 3 cut(s) 76, 502, 706
PspGI CCWGG 2 cut(s) 60, 1182
PspN4I GGNNCC 4 cut(s) 364, 439, 625, 989
PspPI GGNCC 1 cut(s) 765
PsuI RGATCY 2 cut(s) 533, 617
RsaI GTAC 4 cut(s) 599, 625, 762, 1102
RsaNI GTAC 4 cut(s) 598, 624, 761, 1101
RseI CAYNNNNRTG 1 cut(s) 590
SaqAI TTAA 4 cut(s) 273, 414, 731, 1240
SatI GCNGC 4 cut(s) 200, 515, 568, 927
Sau3AI GATC 4 cut(s) 533, 580, 617, 1090
Sau96I GGNCC 1 cut(s) 765
SchI GAGTC 1 cut(s) 205
ScrFI CCNGG 3 cut(s) 62, 1184, 1189
SfaNI GCATC 2 cut(s) 781, 832
Sfr274I CTCGAG 1 cut(s) 235
SlaI CTCGAG 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 590
SmlI CTYRAG 3 cut(s) 115, 235, 1156
SmoI CTYRAG 3 cut(s) 115, 235, 1156
Sse9I AATT 3 cut(s) 39, 240, 996
SsiI CCGC 1 cut(s) 57
SspI AATATT 1 cut(s) 850
SspMI CTAG 2 cut(s) 357, 695
StyD4I CCNGG 3 cut(s) 60, 1182, 1187
StyI CCWWGG 3 cut(s) 453, 601, 827
TaaI ACNGT 1 cut(s) 941
TaiI ACGT 2 cut(s) 21, 260
TaqI TCGA 2 cut(s) 236, 544
TasI AATT 3 cut(s) 39, 240, 996
TatI WGTACW 1 cut(s) 1100
TfiI GAWTC 2 cut(s) 101, 401
Tru1I TTAA 4 cut(s) 273, 414, 731, 1240
Tru9I TTAA 4 cut(s) 273, 414, 731, 1240
TscAI CASTG 2 cut(s) 492, 1072
TseI GCWGC 4 cut(s) 199, 514, 567, 926
TspDTI ATGAA 3 cut(s) 315, 771, 1020
TspGWI ACGGA 1 cut(s) 450
TspRI CASTG 2 cut(s) 492, 1072
Van91I CCANNNNNTGG 1 cut(s) 908
XapI RAATTY 2 cut(s) 39, 240
XhoI CTCGAG 1 cut(s) 235
XspI CTAG 2 cut(s) 357, 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.