Rmu_sc0002777.1_g000019

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002777.1
OG0000348
Physical Location & Seq
Reverse (-)
84133 .. 85975
1843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002777.1_g000019.1.cds

Sequence Viewer

Length: 990 bp
atgtttgagaagtcgtatgatgtcaaaggaaaacttggagaccatgaagtttattgtgtgaaaaggaagttgttgttggaaacccttgcacgtgaactccctaatggtaccattaggttctcatcaaaggttgtttccattgaggaatcaggctactttaagctggtgcatcttgcagatggaaccatcctcaaagccaaggttttggttggttgtgatggagtgaactcagtggtggcaaaatggctgggcttcacgaagccagtttttaaagggagatccgccgttagaggttgtgctgatttcaacagcagtcatggttttgatcccaagttcaagcagtactttgggaatggtattaaaactggtaccattccttgtgatgataaaactgtttactggttcttcggttggtatccctccaaccaagaggaagagctaaagaaaaacccagctcagttgaagcaatatatgttaagcaagctcggaaaggtaacagatgaagtaagggctgttgtggaaaacactgatttggatgcttttagagccgctccagtgacatacaggtatccttgggaacttctttggggaaatattagtaaaggtaatgtatgcgttgctggagacgctctccaccccatggtcccagacattggccaaggcggctgtgctgcattagaagacggtgttgtattagcaaggtttctcggtgaggcactgttgaagaaccaggagcaagaaaataaagataaaggtgaagaagaaaaagaaaaatataagaggattgaaatggggctgaataagtatgccagtgagaggaaatggagaagcatagatctcactagtacatctagtgtggttagttatatacaggtaactgatggtggaaaaataactgctttcttgagggacaagattttcgctccaatcctgacctggttgctgtttaagaaggctgattatgattgtgggaagctcaggagcccttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

329

Amino Acids

36.94

Weight (kDa)

8.84

Isoelectric Point (pI)

29.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 107, 368
AccB1I GGYRCC 2 cut(s) 107, 368
AccB7I CCANNNNNTGG 2 cut(s) 640, 653
AccBSI CCGCTC 1 cut(s) 551
AciI CCGC 3 cut(s) 282, 549, 663
AclWI GGATC 2 cut(s) 273, 320
AcoI YGGCCR 1 cut(s) 655
AcvI CACGTG 1 cut(s) 92
AfaI GTAC 4 cut(s) 109, 344, 370, 847
AfiI CCNNNNNNNGG 3 cut(s) 640, 653, 816
AgsI TTSAA 5 cut(s) 307, 337, 463, 724, 788
AhlI ACTAGT 1 cut(s) 842
AjnI CCWGG 2 cut(s) 729, 935
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 5 cut(s) 163, 439, 455, 484, 976
AluI AGCT 5 cut(s) 163, 439, 455, 484, 976
Alw26I GTCTC 2 cut(s) 33, 618
AlwI GGATC 2 cut(s) 273, 320
AoxI GGCC 1 cut(s) 655
ApeKI GCWGC 1 cut(s) 671
ArsI GACNNNNNNTTYG 2 cut(s) 902, 934
Asp718I GGTACC 2 cut(s) 107, 368
AspS9I GGNCC 1 cut(s) 643
AsuHPI GGTGA 2 cut(s) 722, 767
AvaII GGWCC 1 cut(s) 643
BalI TGGCCA 1 cut(s) 657
BanI GGYRCC 2 cut(s) 107, 368
BanII GRGCYC 1 cut(s) 986
BbrPI CACGTG 1 cut(s) 92
BbsI GAAGAC 1 cut(s) 687
BbvI GCAGC 1 cut(s) 658
BccI CCATC 4 cut(s) 173, 194, 212, 875
BceAI ACGGC 1 cut(s) 269
BciT130I CCWGG 2 cut(s) 731, 937
BciVI GTATCC 2 cut(s) 426, 579
BcoDI GTCTC 2 cut(s) 33, 618
BcuI ACTAGT 1 cut(s) 842
BfaI CTAG 2 cut(s) 843, 852
BfuI GTATCC 2 cut(s) 426, 579
BglI GCCNNNNNGGC 1 cut(s) 663
BglII AGATCT 1 cut(s) 835
BisI GCNGC 3 cut(s) 549, 664, 672
BlsI GCNGC 3 cut(s) 550, 665, 673
BmcAI AGTACT 1 cut(s) 344
Bme1390I CCNGG 2 cut(s) 731, 937
Bme18I GGWCC 1 cut(s) 643
BmgT120I GGNCC 1 cut(s) 643
BmiI GGNNCC 5 cut(s) 109, 184, 370, 645, 983
BmrFI CCNGG 2 cut(s) 731, 937
BmsI GCATC 2 cut(s) 178, 526
BpiI GAAGAC 1 cut(s) 687
BplI GAGNNNNNCTC 2 cut(s) 615, 647
BpmI CTGGAG 2 cut(s) 537, 642
Bpu10I CCTNAGC 1 cut(s) 977
BpuEI CTTGAG 1 cut(s) 925
BsaAI YACGTR 1 cut(s) 92
BsaI GGTCTC 1 cut(s) 33
BsaJI CCNNGG 4 cut(s) 198, 572, 639, 658
BsaXI ACNNNNNCTCC 2 cut(s) 81, 111
Bsc4I CCNNNNNNNGG 3 cut(s) 640, 653, 816
Bse1I ACTGG 5 cut(s) 263, 370, 404, 554, 810
BseBI CCWGG 2 cut(s) 731, 937
BseDI CCNNGG 4 cut(s) 198, 572, 639, 658
BseGI GGATG 2 cut(s) 186, 541
BseLI CCNNNNNNNGG 3 cut(s) 640, 653, 816
BseMII CTCAG 2 cut(s) 243, 470
BseNI ACTGG 5 cut(s) 263, 370, 404, 554, 810
BseXI GCAGC 1 cut(s) 658
BseYI CCCAGC 2 cut(s) 247, 451
BshFI GGCC 1 cut(s) 657
BshNI GGYRCC 2 cut(s) 107, 368
BslFI GGGAC 2 cut(s) 629, 923
BslI CCNNNNNNNGG 3 cut(s) 640, 653, 816
BsmAI GTCTC 2 cut(s) 33, 618
BsmBI CGTCTC 1 cut(s) 618
BsmFI GGGAC 2 cut(s) 629, 923
BsnI GGCC 1 cut(s) 657
Bso31I GGTCTC 1 cut(s) 33
Bsp1286I GDGCHC 1 cut(s) 986
Bsp143I GATC 3 cut(s) 278, 325, 835
Bsp19I CCATGG 1 cut(s) 639
BspACI CCGC 3 cut(s) 282, 549, 663
BspANI GGCC 1 cut(s) 657
BspCNI CTCAG 3 cut(s) 242, 469, 990
BspLI GGNNCC 5 cut(s) 109, 184, 370, 645, 983
BspPI GGATC 2 cut(s) 273, 320
BspQI GCTCTTC 1 cut(s) 429
BspT107I GGYRCC 2 cut(s) 107, 368
BspTNI GGTCTC 1 cut(s) 33
BsrBI CCGCTC 1 cut(s) 551
BsrI ACTGG 5 cut(s) 263, 370, 404, 554, 810
BssECI CCNNGG 4 cut(s) 198, 572, 639, 658
BssMI GATC 3 cut(s) 278, 325, 835
BssT1I CCWWGG 4 cut(s) 198, 572, 639, 658
Bst2UI CCWGG 2 cut(s) 731, 937
Bst4CI ACNGT 3 cut(s) 394, 686, 720
Bst6I CTCTTC 1 cut(s) 429
BstBAI YACGTR 1 cut(s) 92
BstC8I GCNNGC 1 cut(s) 482
BstDEI CTNAG 3 cut(s) 229, 456, 977
BstDSI CCRYGG 1 cut(s) 639
BstF5I GGATG 2 cut(s) 186, 541
BstKTI GATC 3 cut(s) 281, 328, 838
BstMAI GTCTC 2 cut(s) 33, 618
BstMBI GATC 3 cut(s) 278, 325, 835
BstMWI GCNNNNNNNGC 3 cut(s) 545, 626, 663
BstNI CCWGG 2 cut(s) 731, 937
BstSCI CCNGG 2 cut(s) 729, 935
BstV1I GCAGC 1 cut(s) 658
BstV2I GAAGAC 1 cut(s) 687
BstX2I RGATCY 2 cut(s) 278, 835
BstXI CCANNNNNNTGG 1 cut(s) 205
BstYI RGATCY 2 cut(s) 278, 835
BsuI GTATCC 2 cut(s) 426, 579
BsuRI GGCC 1 cut(s) 657
BtgI CCRYGG 1 cut(s) 639
BtsCI GGATG 2 cut(s) 186, 541
BtsIMutI CAGTG 5 cut(s) 237, 525, 561, 716, 817
Cac8I GCNNGC 1 cut(s) 482
Cfr13I GGNCC 1 cut(s) 643
CseI GACGC 1 cut(s) 635
CsiI ACCWGGT 1 cut(s) 935
Csp6I GTAC 4 cut(s) 108, 343, 369, 846
CviAII CATG 3 cut(s) 44, 317, 640
CviQI GTAC 4 cut(s) 108, 343, 369, 846
DdeI CTNAG 3 cut(s) 229, 456, 977
DpnI GATC 3 cut(s) 280, 327, 837
DpnII GATC 3 cut(s) 278, 325, 835
DraI TTTAAA 1 cut(s) 271
EaeI YGGCCR 1 cut(s) 655
Eam1104I CTCTTC 1 cut(s) 429
EarI CTCTTC 1 cut(s) 429
EciI GGCGGA 1 cut(s) 271
Eco130I CCWWGG 4 cut(s) 198, 572, 639, 658
Eco24I GRGCYC 1 cut(s) 986
Eco31I GGTCTC 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 643
Eco72I CACGTG 1 cut(s) 92
EcoRII CCWGG 2 cut(s) 729, 935
EcoT14I CCWWGG 4 cut(s) 198, 572, 639, 658
EcoT38I GRGCYC 1 cut(s) 986
ErhI CCWWGG 4 cut(s) 198, 572, 639, 658
Esp3I CGTCTC 1 cut(s) 618
FaeI CATG 3 cut(s) 47, 320, 643
FalI AAGNNNNNCTT 4 cut(s) 18, 50, 329, 361
FaqI GGGAC 2 cut(s) 629, 923
FatI CATG 3 cut(s) 43, 316, 639
Fnu4HI GCNGC 3 cut(s) 549, 664, 672
FokI GGATG 2 cut(s) 173, 548
FriOI GRGCYC 1 cut(s) 986
Fsp4HI GCNGC 3 cut(s) 549, 664, 672
FspBI CTAG 2 cut(s) 843, 852
GluI GCNGC 3 cut(s) 549, 664, 672
GsaI CCCAGC 2 cut(s) 251, 455
GsuI CTGGAG 2 cut(s) 537, 642
HaeIII GGCC 1 cut(s) 657
HgaI GACGC 1 cut(s) 635
Hin1II CATG 3 cut(s) 47, 320, 643
HinfI GANTC 1 cut(s) 146
HphI GGTGA 2 cut(s) 722, 767
Hpy166II GTNNAC 3 cut(s) 95, 226, 397
Hpy188I TCNGA 1 cut(s) 488
Hpy188III TCNNGA 4 cut(s) 256, 904, 931, 979
Hpy8I GTNNAC 3 cut(s) 95, 226, 397
HpyAV CCTTC 1 cut(s) 946
HpyCH4III ACNGT 3 cut(s) 394, 686, 720
HpyCH4IV ACGT 1 cut(s) 91
HpyCH4V TGCA 4 cut(s) 89, 169, 176, 674
HpyF10VI GCNNNNNNNGC 3 cut(s) 545, 626, 663
HpyF3I CTNAG 3 cut(s) 229, 456, 977
HpySE526I ACGT 1 cut(s) 91
Hsp92II CATG 3 cut(s) 47, 320, 643
KpnI GGTACC 2 cut(s) 111, 372
Kzo9I GATC 3 cut(s) 278, 325, 835
LguI GCTCTTC 1 cut(s) 429
LmnI GCTCC 4 cut(s) 556, 733, 928, 981
Lsp1109I GCAGC 1 cut(s) 658
LweI GCATC 2 cut(s) 178, 526
MabI ACCWGGT 1 cut(s) 935
MaeI CTAG 2 cut(s) 843, 852
MaeII ACGT 1 cut(s) 91
MaeIII GTNAC 3 cut(s) 493, 556, 874
MalI GATC 3 cut(s) 280, 327, 837
MbiI CCGCTC 1 cut(s) 551
MboI GATC 3 cut(s) 278, 325, 835
MboII GAAGA 6 cut(s) 397, 446, 692, 736, 770, 773
MflI RGATCY 2 cut(s) 278, 835
MhlI GDGCHC 1 cut(s) 986
MlsI TGGCCA 1 cut(s) 657
MluNI TGGCCA 1 cut(s) 657
MmeI TCCRAC 2 cut(s) 57, 447
MnlI CCTC 9 cut(s) 136, 200, 284, 424, 430, 706, 774, 810, 900
Mox20I TGGCCA 1 cut(s) 657
MscI TGGCCA 1 cut(s) 657
MseI TTAA 6 cut(s) 159, 270, 360, 476, 948, 988
Msp20I TGGCCA 1 cut(s) 657
MspR9I CCNGG 2 cut(s) 731, 937
MvaI CCWGG 2 cut(s) 731, 937
MwoI GCNNNNNNNGC 3 cut(s) 545, 626, 663
NcoI CCATGG 1 cut(s) 639
NdeII GATC 3 cut(s) 278, 325, 835
NlaIII CATG 3 cut(s) 47, 320, 643
NlaIV GGNNCC 5 cut(s) 109, 184, 370, 645, 983
NmuCI GTSAC 1 cut(s) 556
PciSI GCTCTTC 1 cut(s) 429
PfeI GAWTC 1 cut(s) 146
PflMI CCANNNNNTGG 2 cut(s) 640, 653
PkrI GCNGC 3 cut(s) 550, 665, 673
PmaCI CACGTG 1 cut(s) 92
PmlI CACGTG 1 cut(s) 92
Ppu21I YACGTR 1 cut(s) 92
Psp6I CCWGG 2 cut(s) 729, 935
PspCI CACGTG 1 cut(s) 92
PspFI CCCAGC 2 cut(s) 247, 451
PspGI CCWGG 2 cut(s) 729, 935
PspN4I GGNNCC 5 cut(s) 109, 184, 370, 645, 983
PspPI GGNCC 1 cut(s) 643
PsuI RGATCY 2 cut(s) 278, 835
RsaI GTAC 4 cut(s) 109, 344, 370, 847
RsaNI GTAC 4 cut(s) 108, 343, 369, 846
SapI GCTCTTC 1 cut(s) 429
SaqAI TTAA 6 cut(s) 159, 270, 360, 476, 948, 988
SatI GCNGC 3 cut(s) 549, 664, 672
Sau3AI GATC 3 cut(s) 278, 325, 835
Sau96I GGNCC 1 cut(s) 643
ScaI AGTACT 1 cut(s) 344
ScrFI CCNGG 2 cut(s) 731, 937
SduI GDGCHC 1 cut(s) 986
SexAI ACCWGGT 1 cut(s) 935
SfaNI GCATC 2 cut(s) 178, 526
SinI GGWCC 1 cut(s) 643
SmlI CTYRAG 1 cut(s) 904
SmoI CTYRAG 1 cut(s) 904
SpeI ACTAGT 1 cut(s) 842
SsiI CCGC 3 cut(s) 282, 549, 663
SspI AATATT 1 cut(s) 595
SspMI CTAG 2 cut(s) 843, 852
StyD4I CCNGG 2 cut(s) 729, 935
StyI CCWWGG 4 cut(s) 198, 572, 639, 658
TaaI ACNGT 3 cut(s) 394, 686, 720
TaiI ACGT 1 cut(s) 94
TatI WGTACW 2 cut(s) 342, 845
TauI GCSGC 2 cut(s) 551, 666
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 6 cut(s) 159, 270, 360, 476, 948, 988
Tru9I TTAA 6 cut(s) 159, 270, 360, 476, 948, 988
TscAI CASTG 5 cut(s) 237, 532, 561, 723, 817
TseFI GTSAC 1 cut(s) 556
TseI GCWGC 1 cut(s) 671
Tsp45I GTSAC 1 cut(s) 556
TspDTI ATGAA 2 cut(s) 60, 516
TspRI CASTG 5 cut(s) 237, 532, 561, 723, 817
Van91I CCANNNNNTGG 2 cut(s) 640, 653
VpaK11BI GGWCC 1 cut(s) 643
XcmI CCANNNNNNNNNTGG 1 cut(s) 933
XspI CTAG 2 cut(s) 843, 852
ZrmI AGTACT 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.