Rroxscaffold_7G00189960

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000348
Physical Location & Seq
Forward (+)
29819038 .. 29822362
3325 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00189960.1

Sequence Viewer

Length: 1242 bp
ATGCAACAAGTAGAGGAAGTTGTGATTGTGGGAGCTGGAATTTCTGGCCTCACAACCGCCCTGGGACTTCACAGGCTGGGCATTAGGAGCTTAGTGCTGGAATCGTTTGATAGCTTGAGGATAGCAGGGTTTGCACTCGGAATATGGACTAATGCGTGGAGGGCTTTAGATGCCATTGGTGTTGGTGATTATTTACGGCAGCAACATCACACTGTTGTTGGGAACGTGGTTTTCTCGAGAATTTCAGGGCTTCAGATGTTTAAGGTGTCATTTAAGGCGAAAGGAAAACATGGAGACCATGAAATACGTTGTGTGAAAAGGAGGTTGCTGTTGGAAGCCCTTGCAAGTGAACTTCCTAGCGGCACCATTAGGTTCTCTTCAAAGGTTGTTTCCATTGAGGAATCAGGCTACTTTAAGCTGGTGCATCTTGCTGACGGAACCATCCTCAAAGCCAAGGTTTTGGTTGGATGTGATGGAGTAAACTCAGTGGTTGCAAAATGGCTGGGCTTCAAGCAGCCGGTCTTTACAGGAAGATCTGCCATTCGAGGTTGTGCTGAGTTCAAGAGCAGCCATGAGTTTGATCCCATGCTCATGCAGTACCTTGGGAATGGTGTTAGATCTGGTACCATTCCTTGTGATGATAAAAATGTTTACTGGTTCTTCACTTGGTCTCCCTCCAGCCAAGAGAAAGAGCTAGAAGAAAACCCAGCTCAGTTGAAGCAATATATGTTAAGCAAGCTCGGGAAGGTATCAGATGAAGTAAGGGCTGTTGTGGAAAACACTAATTTGGATGCTTTTATATCCTCTCCCTTGAGATATAGGCATCCTTGGGAGCTTCTTTGGGGAAATATTAGCAAAGGTACTGTATGTGTAGCTGGAGACGCGCTCCACCCCATGACCCCAGACATTGCACAAGGCGGCTGTGCTGCATTAGAGGACGGTGTTGTATTAGCAAGGTGTCTTGGTGAGGCCTTGTTGAAGAATCGGAGGCAAGAAATTAGAAATGAAGGTGACCAAGGAAACGAGGAATATAAAATGATTGAAAGAGGGTTGAATAAGTATGCCAGTGAGAGGAAATGGAGAAGTTTTGATCTTATTAGTACAGCTTATGTGGTTGGTTTTATACAGGAGGCTGATGGAAAATTAATTACTTTCTTGAGGAACAAGTTTTTGGCTCCAATCCTGGCTCGGTTGCTGTTGAAGAAGGCTGATTATGATTGTGGTAAGCTCAGAAGCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

413

Amino Acids

45.86

Weight (kDa)

8.97

Isoelectric Point (pI)

37.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 6 - 326 8.5e-26 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 623
AccB1I GGYRCC 2 cut(s) 362, 623
AccII CGCG 1 cut(s) 884
AciI CCGC 3 cut(s) 57, 360, 918
AclWI GGATC 1 cut(s) 575
AcsI RAATTY 2 cut(s) 39, 240
AcuI CTGAAG 1 cut(s) 236
AfaI GTAC 4 cut(s) 599, 625, 862, 1102
AfiI CCNNNNNNNGG 1 cut(s) 1071
AgsI TTSAA 8 cut(s) 381, 511, 562, 718, 979, 1043, 1054, 1201
AjnI CCWGG 2 cut(s) 60, 1182
AjuI GAANNNNNNNTTGG 2 cut(s) 1154, 1186
Alw26I GTCTC 3 cut(s) 288, 675, 873
AlwI GGATC 1 cut(s) 575
Ama87I CYCGRG 2 cut(s) 235, 740
AoxI GGCC 2 cut(s) 46, 969
ApeKI GCWGC 4 cut(s) 199, 514, 567, 926
ApoI RAATTY 2 cut(s) 39, 240
AseI ATTAAT 1 cut(s) 1145
Asp718I GGTACC 1 cut(s) 623
AspLEI GCGC 1 cut(s) 886
AsuHPI GGTGA 3 cut(s) 197, 977, 1022
AvaI CYCGRG 2 cut(s) 235, 740
BanI GGYRCC 2 cut(s) 362, 623
BbvI GCAGC 4 cut(s) 211, 526, 579, 913
BccI CCATC 3 cut(s) 449, 467, 1130
BceAI ACGGC 1 cut(s) 212
BciT130I CCWGG 2 cut(s) 62, 1184
BcoDI GTCTC 3 cut(s) 288, 675, 873
BfaI CTAG 2 cut(s) 357, 695
BglII AGATCT 2 cut(s) 533, 617
BisI GCNGC 6 cut(s) 200, 361, 515, 568, 919, 927
BlsI GCNGC 6 cut(s) 201, 362, 516, 569, 920, 928
Bme1390I CCNGG 2 cut(s) 62, 1184
BmeT110I CYCGRG 2 cut(s) 235, 740
BmiI GGNNCC 4 cut(s) 364, 439, 625, 1176
BmrFI CCNGG 2 cut(s) 62, 1184
BmsI GCATC 4 cut(s) 160, 433, 781, 832
BplI GAGNNNNNCTC 2 cut(s) 870, 902
BpmI CTGGAG 2 cut(s) 661, 897
BpuEI CTTGAG 3 cut(s) 136, 832, 1177
BsaI GGTCTC 2 cut(s) 288, 675
BsaJI CCNNGG 6 cut(s) 60, 61, 453, 601, 827, 1015
BsaXI ACNNNNNCTCC 2 cut(s) 655, 685
Bsc4I CCNNNNNNNGG 1 cut(s) 1071
Bse118I RCCGGY 1 cut(s) 517
Bse1I ACTGG 2 cut(s) 659, 1065
Bse3DI GCAATG 1 cut(s) 906
BseBI CCWGG 2 cut(s) 62, 1184
BseDI CCNNGG 6 cut(s) 60, 61, 453, 601, 827, 1015
BseGI GGATG 4 cut(s) 441, 473, 796, 823
BseLI CCNNNNNNNGG 1 cut(s) 1071
BseMI GCAATG 1 cut(s) 906
BseMII CTCAG 3 cut(s) 498, 546, 725
BseNI ACTGG 2 cut(s) 659, 1065
BseXI GCAGC 4 cut(s) 211, 526, 579, 913
BseYI CCCAGC 3 cut(s) 76, 502, 706
Bsh1236I CGCG 1 cut(s) 884
BshFI GGCC 2 cut(s) 48, 971
BshNI GGYRCC 2 cut(s) 362, 623
BsiHKCI CYCGRG 2 cut(s) 235, 740
BsiSI CCGG 1 cut(s) 518
BslFI GGGAC 1 cut(s) 78
BslI CCNNNNNNNGG 1 cut(s) 1071
BsmAI GTCTC 3 cut(s) 288, 675, 873
BsmBI CGTCTC 1 cut(s) 873
BsmFI GGGAC 1 cut(s) 78
BsnI GGCC 2 cut(s) 48, 971
Bso31I GGTCTC 2 cut(s) 288, 675
BsoBI CYCGRG 2 cut(s) 235, 740
Bsp143I GATC 4 cut(s) 533, 580, 617, 1090
BspACI CCGC 3 cut(s) 57, 360, 918
BspANI GGCC 2 cut(s) 48, 971
BspCNI CTCAG 4 cut(s) 497, 547, 724, 1242
BspFNI CGCG 1 cut(s) 884
BspLI GGNNCC 4 cut(s) 364, 439, 625, 1176
BspPI GGATC 1 cut(s) 575
BspT107I GGYRCC 2 cut(s) 362, 623
BspTNI GGTCTC 2 cut(s) 288, 675
BsrDI GCAATG 1 cut(s) 906
BsrFI RCCGGY 1 cut(s) 517
BsrI ACTGG 2 cut(s) 659, 1065
BssAI RCCGGY 1 cut(s) 517
BssECI CCNNGG 6 cut(s) 60, 61, 453, 601, 827, 1015
BssMI GATC 4 cut(s) 533, 580, 617, 1090
BssT1I CCWWGG 4 cut(s) 453, 601, 827, 1015
Bst2UI CCWGG 2 cut(s) 62, 1184
Bst4CI ACNGT 3 cut(s) 214, 865, 941
Bst6I CTCTTC 1 cut(s) 382
BstAPI GCANNNNNTGC 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 737
BstDEI CTNAG 5 cut(s) 91, 484, 555, 711, 1229
BstEII GGTNACC 1 cut(s) 1010
BstF5I GGATG 4 cut(s) 441, 473, 796, 823
BstFNI CGCG 1 cut(s) 884
BstHHI GCGC 1 cut(s) 886
BstKTI GATC 4 cut(s) 536, 583, 620, 1093
BstMAI GTCTC 3 cut(s) 288, 675, 873
BstMBI GATC 4 cut(s) 533, 580, 617, 1090
BstMWI GCNNNNNNNGC 5 cut(s) 87, 131, 161, 170, 881
BstNI CCWGG 2 cut(s) 62, 1184
BstPI GGTNACC 1 cut(s) 1010
BstSCI CCNGG 2 cut(s) 60, 1182
BstUI CGCG 1 cut(s) 884
BstV1I GCAGC 4 cut(s) 211, 526, 579, 913
BstX2I RGATCY 2 cut(s) 533, 617
BstXI CCANNNNNNTGG 1 cut(s) 460
BstYI RGATCY 2 cut(s) 533, 617
BsuRI GGCC 2 cut(s) 48, 971
BtsCI GGATG 4 cut(s) 441, 473, 796, 823
BtsIMutI CAGTG 3 cut(s) 210, 492, 1072
Cac8I GCNNGC 1 cut(s) 737
CfoI GCGC 1 cut(s) 886
Cfr10I RCCGGY 1 cut(s) 517
CseI GACGC 1 cut(s) 890
Csp6I GTAC 4 cut(s) 598, 624, 861, 1101
CviAII CATG 6 cut(s) 290, 299, 572, 586, 592, 895
CviQI GTAC 4 cut(s) 598, 624, 861, 1101
DdeI CTNAG 5 cut(s) 91, 484, 555, 711, 1229
DpnI GATC 4 cut(s) 535, 582, 619, 1092
DpnII GATC 4 cut(s) 533, 580, 617, 1090
Eam1104I CTCTTC 1 cut(s) 382
EarI CTCTTC 1 cut(s) 382
Eco130I CCWWGG 4 cut(s) 453, 601, 827, 1015
Eco147I AGGCCT 1 cut(s) 971
Eco31I GGTCTC 2 cut(s) 288, 675
Eco57I CTGAAG 1 cut(s) 236
Eco88I CYCGRG 2 cut(s) 235, 740
Eco91I GGTNACC 1 cut(s) 1010
EcoO65I GGTNACC 1 cut(s) 1010
EcoRII CCWGG 2 cut(s) 60, 1182
EcoT14I CCWWGG 4 cut(s) 453, 601, 827, 1015
ErhI CCWWGG 4 cut(s) 453, 601, 827, 1015
Esp3I CGTCTC 1 cut(s) 873
FaeI CATG 6 cut(s) 293, 302, 575, 589, 595, 898
FaqI GGGAC 1 cut(s) 78
FatI CATG 6 cut(s) 289, 298, 571, 585, 591, 894
Fnu4HI GCNGC 6 cut(s) 200, 361, 515, 568, 919, 927
FokI GGATG 4 cut(s) 428, 480, 803, 810
Fsp4HI GCNGC 6 cut(s) 200, 361, 515, 568, 919, 927
FspBI CTAG 2 cut(s) 357, 695
GlaI GCGC 1 cut(s) 885
GluI GCNGC 6 cut(s) 200, 361, 515, 568, 919, 927
GsaI CCCAGC 3 cut(s) 80, 506, 710
GsuI CTGGAG 2 cut(s) 661, 897
HaeIII GGCC 2 cut(s) 48, 971
HapII CCGG 1 cut(s) 518
HgaI GACGC 1 cut(s) 890
HhaI GCGC 1 cut(s) 886
Hin1II CATG 6 cut(s) 293, 302, 575, 589, 595, 898
Hin6I GCGC 1 cut(s) 884
HinP1I GCGC 1 cut(s) 884
HinfI GANTC 3 cut(s) 101, 401, 982
HpaII CCGG 1 cut(s) 518
HphI GGTGA 3 cut(s) 197, 977, 1022
Hpy166II GTNNAC 3 cut(s) 350, 481, 652
Hpy188I TCNGA 5 cut(s) 140, 255, 754, 987, 1232
Hpy188III TCNNGA 5 cut(s) 235, 237, 562, 742, 1156
Hpy8I GTNNAC 3 cut(s) 350, 481, 652
HpyAV CCTTC 3 cut(s) 739, 1001, 1198
HpyCH4III ACNGT 3 cut(s) 214, 865, 941
HpyCH4IV ACGT 2 cut(s) 225, 307
HpyCH4V TGCA 8 cut(s) 4, 134, 344, 424, 494, 595, 911, 929
HpyF10VI GCNNNNNNNGC 5 cut(s) 87, 131, 161, 170, 881
HpyF3I CTNAG 5 cut(s) 91, 484, 555, 711, 1229
HpySE526I ACGT 2 cut(s) 225, 307
Hsp92II CATG 6 cut(s) 293, 302, 575, 589, 595, 898
HspAI GCGC 1 cut(s) 884
KpnI GGTACC 1 cut(s) 627
Kzo9I GATC 4 cut(s) 533, 580, 617, 1090
LmnI GCTCC 5 cut(s) 32, 87, 832, 891, 1180
Lsp1109I GCAGC 4 cut(s) 211, 526, 579, 913
LweI GCATC 4 cut(s) 160, 433, 781, 832
MaeI CTAG 2 cut(s) 357, 695
MaeII ACGT 2 cut(s) 225, 307
MaeIII GTNAC 1 cut(s) 1010
MalI GATC 4 cut(s) 535, 582, 619, 1092
MboI GATC 4 cut(s) 533, 580, 617, 1090
MboII GAAGA 6 cut(s) 369, 543, 652, 710, 991, 1213
MflI RGATCY 2 cut(s) 533, 617
MluCI AATT 6 cut(s) 39, 240, 784, 996, 1142, 1146
MmeI TCCRAC 2 cut(s) 312, 445
MseI TTAA 6 cut(s) 261, 273, 414, 731, 1145, 1240
MslI CAYNNNNRTG 1 cut(s) 590
MspI CCGG 1 cut(s) 518
MspR9I CCNGG 2 cut(s) 62, 1184
MvaI CCWGG 2 cut(s) 62, 1184
MvnI CGCG 1 cut(s) 884
MwoI GCNNNNNNNGC 5 cut(s) 87, 131, 161, 170, 881
NdeII GATC 4 cut(s) 533, 580, 617, 1090
NlaIII CATG 6 cut(s) 293, 302, 575, 589, 595, 898
NlaIV GGNNCC 4 cut(s) 364, 439, 625, 1176
NmuCI GTSAC 1 cut(s) 1010
PaeR7I CTCGAG 1 cut(s) 235
PasI CCCWGGG 1 cut(s) 61
PceI AGGCCT 1 cut(s) 971
PfeI GAWTC 3 cut(s) 101, 401, 982
PkrI GCNGC 6 cut(s) 201, 362, 516, 569, 920, 928
PshBI ATTAAT 1 cut(s) 1145
Psp6I CCWGG 2 cut(s) 60, 1182
PspEI GGTNACC 1 cut(s) 1010
PspFI CCCAGC 3 cut(s) 76, 502, 706
PspGI CCWGG 2 cut(s) 60, 1182
PspN4I GGNNCC 4 cut(s) 364, 439, 625, 1176
PsuI RGATCY 2 cut(s) 533, 617
RsaI GTAC 4 cut(s) 599, 625, 862, 1102
RsaNI GTAC 4 cut(s) 598, 624, 861, 1101
RseI CAYNNNNRTG 1 cut(s) 590
SaqAI TTAA 6 cut(s) 261, 273, 414, 731, 1145, 1240
SatI GCNGC 6 cut(s) 200, 361, 515, 568, 919, 927
Sau3AI GATC 4 cut(s) 533, 580, 617, 1090
ScrFI CCNGG 2 cut(s) 62, 1184
SfaNI GCATC 4 cut(s) 160, 433, 781, 832
Sfr274I CTCGAG 1 cut(s) 235
SlaI CTCGAG 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 590
SmlI CTYRAG 4 cut(s) 115, 235, 811, 1156
SmoI CTYRAG 4 cut(s) 115, 235, 811, 1156
Sse9I AATT 6 cut(s) 39, 240, 784, 996, 1142, 1146
SseBI AGGCCT 1 cut(s) 971
SsiI CCGC 3 cut(s) 57, 360, 918
SspI AATATT 1 cut(s) 850
SspMI CTAG 2 cut(s) 357, 695
StuI AGGCCT 1 cut(s) 971
StyD4I CCNGG 2 cut(s) 60, 1182
StyI CCWWGG 4 cut(s) 453, 601, 827, 1015
TaaI ACNGT 3 cut(s) 214, 865, 941
TaiI ACGT 2 cut(s) 228, 310
TaqI TCGA 2 cut(s) 236, 544
TasI AATT 6 cut(s) 39, 240, 784, 996, 1142, 1146
TatI WGTACW 1 cut(s) 1100
TauI GCSGC 2 cut(s) 363, 921
TfiI GAWTC 3 cut(s) 101, 401, 982
Tru1I TTAA 6 cut(s) 261, 273, 414, 731, 1145, 1240
Tru9I TTAA 6 cut(s) 261, 273, 414, 731, 1145, 1240
TscAI CASTG 3 cut(s) 217, 492, 1072
TseFI GTSAC 1 cut(s) 1010
TseI GCWGC 4 cut(s) 199, 514, 567, 926
Tsp45I GTSAC 1 cut(s) 1010
TspDTI ATGAA 3 cut(s) 315, 771, 1020
TspGWI ACGGA 1 cut(s) 450
TspRI CASTG 3 cut(s) 217, 492, 1072
VspI ATTAAT 1 cut(s) 1145
XapI RAATTY 2 cut(s) 39, 240
XhoI CTCGAG 1 cut(s) 235
XspI CTAG 2 cut(s) 357, 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.