Rroxscaffold_7G00189700

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000348
Physical Location & Seq
Forward (+)
29505041 .. 29508218
3178 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00189700.1

Sequence Viewer

Length: 1155 bp
ATGCAACAAGTAGAGGAAGTTGTGATTGTGGGAGCTGGAATTTTCTGGCCTCACAACCGCCCTGGGACTTCACAGTGCTGGGAATCGTTTGATAGCTTGAGGATAGCAGGGTTTGCACTCGGAATATGGACTAATGCGTGGAGGGCTTTAGATGCCATTGGTGTTGGTGATTATTTACGGCAGCAACATCACACTGTTGTTGGTGGAGACCATGAAATACGTTGTGTGAAAAGGAGGTTGCTGTTGGAAGCCCTTGCAAGTGAACTTCCTAGCGGCACCATTAGGTTCTCTTCAAAGGTTGTTTCCATTGAGGAATCAGGCTACTTTAAGCTGGTGCATCTTGCTGACGGAACCATCCTCAAAGCCAAGGTTTTGGTTGGATGCGATGGAGTAAACTCAGTGGTTGCAAAATGGCTGGGCTTCAAGCAGCCGGTCTTTACAGGAAGATCTGCCATTCGAGGTTGTGCTGAGTTCAAGAGCAGCCATGAGTTTGATCCCATGCTCATGCAGTACCTTGGGAATGGTGTTAGATCTGGTACCGTTCCTTGTGATGATAAAAATGTTTACTGGTTCTTCACTTGGTCTCCCTCCAGCCAAGAGAAAGAGCTAGAAGAAAACCCAGCTCAGTTGAAGCAATATATGTTAAGCAAGCTCGGGAAGGTATCAGATGAAGTAAGGGCTGTTGTGGAAAACACTAATTTGGATGCTTTTGTATCCTCTCCCTTGAGATATAGGCATCCTTGGGAGCTTCTTTGGGGAAATATTAGCAAAGGTACTGTATGTGTAGCTGGAGACGCGCTCCACCCCATGACCCCAGACATTGCACAAGGCGGCTGTGCTGCATTAGAGGACGGTGTTGTATTAGCAAGGTGTCTTGGTGAGGCCTTGTTGAAGAATCGGAGGCAAGAAATTAGAAATGAAGGTGAACAAGGAAAAGAGGAATATAAAATGATTGAAAGAGGGTTGAATAAGTATGCCAGTGAGAGGAAATGGAGAAGTTTTGATCTTATTAGTACAGCTTATGTGGTTGGTTTTATACAGGAGGCTGATGGAAAATTAATTACTTTCTTGAGGAACAAGTTTTTGGCTCCAATCCTGGCTGGGTTGCTGTTGAAGAAGGCTGATTATGATTGTGGTAAGCTCAGAAGCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

384

Amino Acids

42.8

Weight (kDa)

8.01

Isoelectric Point (pI)

42.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 82 - 297 3.8e-15 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 536
AccB1I GGYRCC 2 cut(s) 275, 536
AccII CGCG 1 cut(s) 797
AciI CCGC 3 cut(s) 58, 273, 831
AclWI GGATC 1 cut(s) 488
AcsI RAATTY 1 cut(s) 39
AfaI GTAC 4 cut(s) 512, 538, 775, 1015
AfiI CCNNNNNNNGG 1 cut(s) 984
AgsI TTSAA 8 cut(s) 294, 424, 475, 631, 892, 956, 967, 1114
AjnI CCWGG 2 cut(s) 61, 1095
AjuI GAANNNNNNNTTGG 2 cut(s) 1067, 1099
Alw26I GTCTC 3 cut(s) 201, 588, 786
AlwI GGATC 1 cut(s) 488
Ama87I CYCGRG 1 cut(s) 653
AoxI GGCC 2 cut(s) 47, 882
ApeKI GCWGC 4 cut(s) 181, 427, 480, 839
ApoI RAATTY 1 cut(s) 39
AseI ATTAAT 1 cut(s) 1058
Asp718I GGTACC 1 cut(s) 536
AspLEI GCGC 1 cut(s) 799
AsuHPI GGTGA 3 cut(s) 179, 890, 935
AvaI CYCGRG 1 cut(s) 653
BanI GGYRCC 2 cut(s) 275, 536
BbvI GCAGC 4 cut(s) 193, 439, 492, 826
BccI CCATC 3 cut(s) 362, 380, 1043
BceAI ACGGC 1 cut(s) 194
BciT130I CCWGG 2 cut(s) 63, 1097
BciVI GTATCC 1 cut(s) 724
BcoDI GTCTC 3 cut(s) 201, 588, 786
BfaI CTAG 2 cut(s) 270, 608
BfuI GTATCC 1 cut(s) 724
BglII AGATCT 2 cut(s) 446, 530
BisI GCNGC 6 cut(s) 182, 274, 428, 481, 832, 840
BlsI GCNGC 6 cut(s) 183, 275, 429, 482, 833, 841
Bme1390I CCNGG 2 cut(s) 63, 1097
BmeT110I CYCGRG 1 cut(s) 653
BmiI GGNNCC 4 cut(s) 277, 352, 538, 1089
BmrFI CCNGG 2 cut(s) 63, 1097
BmsI GCATC 5 cut(s) 142, 346, 371, 694, 745
BplI GAGNNNNNCTC 2 cut(s) 783, 815
BpmI CTGGAG 2 cut(s) 574, 810
BpuEI CTTGAG 3 cut(s) 118, 745, 1090
BsaI GGTCTC 2 cut(s) 201, 588
BsaJI CCNNGG 5 cut(s) 61, 62, 366, 514, 740
BsaXI ACNNNNNCTCC 2 cut(s) 568, 598
Bsc4I CCNNNNNNNGG 1 cut(s) 984
Bse118I RCCGGY 1 cut(s) 430
Bse1I ACTGG 2 cut(s) 572, 978
Bse3DI GCAATG 1 cut(s) 819
BseBI CCWGG 2 cut(s) 63, 1097
BseDI CCNNGG 5 cut(s) 61, 62, 366, 514, 740
BseGI GGATG 4 cut(s) 354, 386, 709, 736
BseLI CCNNNNNNNGG 1 cut(s) 984
BseMI GCAATG 1 cut(s) 819
BseMII CTCAG 3 cut(s) 411, 459, 638
BseNI ACTGG 2 cut(s) 572, 978
BseXI GCAGC 4 cut(s) 193, 439, 492, 826
BseYI CCCAGC 4 cut(s) 78, 415, 619, 1100
Bsh1236I CGCG 1 cut(s) 797
BshFI GGCC 2 cut(s) 49, 884
BshNI GGYRCC 2 cut(s) 275, 536
BsiHKCI CYCGRG 1 cut(s) 653
BsiSI CCGG 1 cut(s) 431
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 1 cut(s) 984
BsmAI GTCTC 3 cut(s) 201, 588, 786
BsmBI CGTCTC 1 cut(s) 786
BsmFI GGGAC 1 cut(s) 79
BsnI GGCC 2 cut(s) 49, 884
Bso31I GGTCTC 2 cut(s) 201, 588
BsoBI CYCGRG 1 cut(s) 653
Bsp143I GATC 4 cut(s) 446, 493, 530, 1003
BspACI CCGC 3 cut(s) 58, 273, 831
BspANI GGCC 2 cut(s) 49, 884
BspCNI CTCAG 4 cut(s) 410, 460, 637, 1155
BspFNI CGCG 1 cut(s) 797
BspLI GGNNCC 4 cut(s) 277, 352, 538, 1089
BspPI GGATC 1 cut(s) 488
BspT107I GGYRCC 2 cut(s) 275, 536
BspTNI GGTCTC 2 cut(s) 201, 588
BsrDI GCAATG 1 cut(s) 819
BsrFI RCCGGY 1 cut(s) 430
BsrI ACTGG 2 cut(s) 572, 978
BssAI RCCGGY 1 cut(s) 430
BssECI CCNNGG 5 cut(s) 61, 62, 366, 514, 740
BssMI GATC 4 cut(s) 446, 493, 530, 1003
BssT1I CCWWGG 3 cut(s) 366, 514, 740
Bst2UI CCWGG 2 cut(s) 63, 1097
Bst4CI ACNGT 5 cut(s) 75, 196, 541, 778, 854
Bst6I CTCTTC 1 cut(s) 295
BstAPI GCANNNNNTGC 1 cut(s) 113
BstC8I GCNNGC 1 cut(s) 650
BstDEI CTNAG 4 cut(s) 397, 468, 624, 1142
BstF5I GGATG 4 cut(s) 354, 386, 709, 736
BstFNI CGCG 1 cut(s) 797
BstHHI GCGC 1 cut(s) 799
BstKTI GATC 4 cut(s) 449, 496, 533, 1006
BstMAI GTCTC 3 cut(s) 201, 588, 786
BstMBI GATC 4 cut(s) 446, 493, 530, 1003
BstMWI GCNNNNNNNGC 4 cut(s) 113, 143, 152, 794
BstNI CCWGG 2 cut(s) 63, 1097
BstSCI CCNGG 2 cut(s) 61, 1095
BstUI CGCG 1 cut(s) 797
BstV1I GCAGC 4 cut(s) 193, 439, 492, 826
BstX2I RGATCY 2 cut(s) 446, 530
BstXI CCANNNNNNTGG 1 cut(s) 373
BstYI RGATCY 2 cut(s) 446, 530
BsuI GTATCC 1 cut(s) 724
BsuRI GGCC 2 cut(s) 49, 884
BtgZI GCGATG 1 cut(s) 399
BtsCI GGATG 4 cut(s) 354, 386, 709, 736
BtsIMutI CAGTG 4 cut(s) 80, 192, 405, 985
Cac8I GCNNGC 1 cut(s) 650
CfoI GCGC 1 cut(s) 799
Cfr10I RCCGGY 1 cut(s) 430
CseI GACGC 1 cut(s) 803
Csp6I GTAC 4 cut(s) 511, 537, 774, 1014
CviAII CATG 5 cut(s) 212, 485, 499, 505, 808
CviQI GTAC 4 cut(s) 511, 537, 774, 1014
DdeI CTNAG 4 cut(s) 397, 468, 624, 1142
DpnI GATC 4 cut(s) 448, 495, 532, 1005
DpnII GATC 4 cut(s) 446, 493, 530, 1003
Eam1104I CTCTTC 1 cut(s) 295
EarI CTCTTC 1 cut(s) 295
Eco130I CCWWGG 3 cut(s) 366, 514, 740
Eco147I AGGCCT 1 cut(s) 884
Eco31I GGTCTC 2 cut(s) 201, 588
Eco88I CYCGRG 1 cut(s) 653
EcoRII CCWGG 2 cut(s) 61, 1095
EcoT14I CCWWGG 3 cut(s) 366, 514, 740
ErhI CCWWGG 3 cut(s) 366, 514, 740
Esp3I CGTCTC 1 cut(s) 786
FaeI CATG 5 cut(s) 215, 488, 502, 508, 811
FaqI GGGAC 1 cut(s) 79
FatI CATG 5 cut(s) 211, 484, 498, 504, 807
Fnu4HI GCNGC 6 cut(s) 182, 274, 428, 481, 832, 840
FokI GGATG 4 cut(s) 341, 393, 716, 723
Fsp4HI GCNGC 6 cut(s) 182, 274, 428, 481, 832, 840
FspBI CTAG 2 cut(s) 270, 608
GlaI GCGC 1 cut(s) 798
GluI GCNGC 6 cut(s) 182, 274, 428, 481, 832, 840
GsaI CCCAGC 4 cut(s) 82, 419, 623, 1104
GsuI CTGGAG 2 cut(s) 574, 810
HaeIII GGCC 2 cut(s) 49, 884
HapII CCGG 1 cut(s) 431
HgaI GACGC 1 cut(s) 803
HhaI GCGC 1 cut(s) 799
Hin1II CATG 5 cut(s) 215, 488, 502, 508, 811
Hin6I GCGC 1 cut(s) 797
HinP1I GCGC 1 cut(s) 797
HinfI GANTC 3 cut(s) 83, 314, 895
HpaII CCGG 1 cut(s) 431
HphI GGTGA 3 cut(s) 179, 890, 935
Hpy166II GTNNAC 4 cut(s) 263, 394, 565, 926
Hpy188I TCNGA 4 cut(s) 122, 667, 900, 1145
Hpy188III TCNNGA 3 cut(s) 475, 655, 1069
Hpy8I GTNNAC 4 cut(s) 263, 394, 565, 926
HpyAV CCTTC 3 cut(s) 652, 914, 1111
HpyCH4III ACNGT 5 cut(s) 75, 196, 541, 778, 854
HpyCH4IV ACGT 1 cut(s) 220
HpyCH4V TGCA 8 cut(s) 4, 116, 257, 337, 407, 508, 824, 842
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 143, 152, 794
HpyF3I CTNAG 4 cut(s) 397, 468, 624, 1142
HpySE526I ACGT 1 cut(s) 220
Hsp92II CATG 5 cut(s) 215, 488, 502, 508, 811
HspAI GCGC 1 cut(s) 797
KpnI GGTACC 1 cut(s) 540
Kzo9I GATC 4 cut(s) 446, 493, 530, 1003
LmnI GCTCC 4 cut(s) 32, 745, 804, 1093
Lsp1109I GCAGC 4 cut(s) 193, 439, 492, 826
LweI GCATC 5 cut(s) 142, 346, 371, 694, 745
MaeI CTAG 2 cut(s) 270, 608
MaeII ACGT 1 cut(s) 220
MalI GATC 4 cut(s) 448, 495, 532, 1005
MboI GATC 4 cut(s) 446, 493, 530, 1003
MboII GAAGA 6 cut(s) 282, 456, 565, 623, 904, 1126
MflI RGATCY 2 cut(s) 446, 530
MluCI AATT 5 cut(s) 39, 697, 909, 1055, 1059
MmeI TCCRAC 2 cut(s) 225, 358
MseI TTAA 4 cut(s) 327, 644, 1058, 1153
MslI CAYNNNNRTG 1 cut(s) 503
MspI CCGG 1 cut(s) 431
MspR9I CCNGG 2 cut(s) 63, 1097
MvaI CCWGG 2 cut(s) 63, 1097
MvnI CGCG 1 cut(s) 797
MwoI GCNNNNNNNGC 4 cut(s) 113, 143, 152, 794
NdeII GATC 4 cut(s) 446, 493, 530, 1003
NlaIII CATG 5 cut(s) 215, 488, 502, 508, 811
NlaIV GGNNCC 4 cut(s) 277, 352, 538, 1089
PasI CCCWGGG 1 cut(s) 62
PceI AGGCCT 1 cut(s) 884
PfeI GAWTC 3 cut(s) 83, 314, 895
PkrI GCNGC 6 cut(s) 183, 275, 429, 482, 833, 841
PshBI ATTAAT 1 cut(s) 1058
Psp6I CCWGG 2 cut(s) 61, 1095
PspFI CCCAGC 4 cut(s) 78, 415, 619, 1100
PspGI CCWGG 2 cut(s) 61, 1095
PspN4I GGNNCC 4 cut(s) 277, 352, 538, 1089
PsuI RGATCY 2 cut(s) 446, 530
RsaI GTAC 4 cut(s) 512, 538, 775, 1015
RsaNI GTAC 4 cut(s) 511, 537, 774, 1014
RseI CAYNNNNRTG 1 cut(s) 503
SaqAI TTAA 4 cut(s) 327, 644, 1058, 1153
SatI GCNGC 6 cut(s) 182, 274, 428, 481, 832, 840
Sau3AI GATC 4 cut(s) 446, 493, 530, 1003
ScrFI CCNGG 2 cut(s) 63, 1097
SfaNI GCATC 5 cut(s) 142, 346, 371, 694, 745
SmiMI CAYNNNNRTG 1 cut(s) 503
SmlI CTYRAG 3 cut(s) 97, 724, 1069
SmoI CTYRAG 3 cut(s) 97, 724, 1069
Sse9I AATT 5 cut(s) 39, 697, 909, 1055, 1059
SseBI AGGCCT 1 cut(s) 884
SsiI CCGC 3 cut(s) 58, 273, 831
SspI AATATT 1 cut(s) 763
SspMI CTAG 2 cut(s) 270, 608
StuI AGGCCT 1 cut(s) 884
StyD4I CCNGG 2 cut(s) 61, 1095
StyI CCWWGG 3 cut(s) 366, 514, 740
TaaI ACNGT 5 cut(s) 75, 196, 541, 778, 854
TaiI ACGT 1 cut(s) 223
TaqI TCGA 1 cut(s) 457
TasI AATT 5 cut(s) 39, 697, 909, 1055, 1059
TatI WGTACW 1 cut(s) 1013
TauI GCSGC 2 cut(s) 276, 834
TfiI GAWTC 3 cut(s) 83, 314, 895
Tru1I TTAA 4 cut(s) 327, 644, 1058, 1153
Tru9I TTAA 4 cut(s) 327, 644, 1058, 1153
TscAI CASTG 4 cut(s) 80, 199, 405, 985
TseI GCWGC 4 cut(s) 181, 427, 480, 839
TspDTI ATGAA 3 cut(s) 228, 684, 933
TspGWI ACGGA 1 cut(s) 363
TspRI CASTG 4 cut(s) 80, 199, 405, 985
VspI ATTAAT 1 cut(s) 1058
XapI RAATTY 1 cut(s) 39
XspI CTAG 2 cut(s) 270, 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.