RLG00000013201

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000348
Physical Location & Seq
Forward (+)
27592596 .. 27605146
12551 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013201

Sequence Viewer

Length: 1242 bp
ATGCAAGTAGTAGAGGACGTTGTGATTGTGGGAGCTGGAATTTCTGGCCTCACAACCGCCCTGGGACTTCACAGGCTGGGCATTAGGAGCTTAGTGCTGGAATCGTTTGATAGCTTGAGGATAACAGGGTTTGCACTCACAACATGGACTAATGCGTGGAAGGCTTTAGATGCCATTGGTGTCGGTGATTATTTACGGCAGCAACACCTGACTCTTCTTGGGAATGTGGTTTTCTCAAGAATTTCAGGGCTTCAGATATCTGAAATGTCACTTAAGGGGAAAGGAAAACATGGAGACCGTGAAATTCGTTGTGTGAAAAGGAAGTCACTGTTAGAAGCCCTTGCGAGCGAACTTCCTAGTGGCACCATTATGTTCTCTTCAAGGGTTGTTTCCATTGAGGAATCAGGCTACTTTAAGCTGGTGCATCTTGCCGACGGAACCATCCTCAAAGCCAAGGTTTTGGTTGGATGTGATGGAGTAAACTCAGTGGTTGCAAAATGGCTGGGCTTCAAGCCGCCGGTTTTTACAGGAAGATCTGCAGTTCGAGGTAGTGCTGAGTTCAAGAGCAGCCATGAGTTTGATCCCATGTTCATGCAGTACTTTGGGAATGGTGTTAGATCTGGCGTAGTTCCTTGTGATGATAAAAATGTTTACTGGTACTTCACTTGGTCTCCCTCCAGCCAAGAGAAAGAGCTAGAAGAAAACCCAGCTCAGTTGAAGCAATATGTGTTAAGCAAGCTCGGAAAGGTATCAGATGAAGTAAGGGCTGTTGTGGAAAACACTGATTTGGATGCTTTTATATTCTCTCCATTGAGATATAGGCATCCTTGGGAACTTCTTTGGGGAAATATTAGCAAAGGTAATGTATGTGTAGCTGGAGACGCGCTCCACCCCATGACCCCAGACATTGGACAAGGTGGCTGTGCTGCATTAGAGGACGGTGTTGTATTAGCAAGGTGTCTCGGTGAGGCCTTGTTGAAGAATCGGAGCAAAGAAATTAGAGATGAAGGTGAACAAGGAAAAGAGGAATATAAAATGATTGAAAGAGGGTTGAATAAGTATGCCAGTGAGAGGAAATGGAGAAGTTTTGATCTTATTAGTACAGCTTATGTGGTTGGTTTTATACAGGAGGCTGATGGAAAAATAATGACTTTCTTGAGGGACAAGTTTTTCTCTCCAATCCTGGCTGGGTTGCGGTTGAAGAAGGCTGATTATGATTGTGGTAAGCTCAGAAGCTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

414

Amino Acids

45.81

Weight (kDa)

8.52

Isoelectric Point (pI)

34.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 6 - 333 2.4e-26 FAD binding domain
Lycopene_cycl PF05834 6 - 164 1.7e-07 Lycopene cyclase protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 362
AccB7I CCANNNNNTGG 1 cut(s) 908
AccII CGCG 1 cut(s) 884
AciI CCGC 3 cut(s) 57, 515, 1195
AclWI GGATC 1 cut(s) 575
AcsI RAATTY 3 cut(s) 39, 240, 303
AcuI CTGAAG 1 cut(s) 236
AfaI GTAC 3 cut(s) 599, 659, 1102
AfiI CCNNNNNNNGG 2 cut(s) 908, 1071
AflII CTTAAG 1 cut(s) 272
AgsI TTSAA 8 cut(s) 381, 511, 562, 718, 979, 1043, 1054, 1201
AjnI CCWGG 2 cut(s) 60, 1182
Alw26I GTCTC 4 cut(s) 288, 675, 873, 965
AlwI GGATC 1 cut(s) 575
AoxI GGCC 2 cut(s) 46, 969
ApeKI GCWGC 3 cut(s) 199, 567, 926
ApoI RAATTY 3 cut(s) 39, 240, 303
AspLEI GCGC 1 cut(s) 886
AsuHPI GGTGA 3 cut(s) 197, 977, 1022
BanI GGYRCC 1 cut(s) 362
BbvI GCAGC 3 cut(s) 211, 579, 913
BccI CCATC 3 cut(s) 449, 467, 1130
BceAI ACGGC 1 cut(s) 212
BciT130I CCWGG 2 cut(s) 62, 1184
BcoDI GTCTC 4 cut(s) 288, 675, 873, 965
BfaI CTAG 2 cut(s) 357, 695
BfmI CTRYAG 1 cut(s) 537
BfrI CTTAAG 1 cut(s) 272
BglII AGATCT 2 cut(s) 533, 617
BisI GCNGC 4 cut(s) 200, 515, 568, 927
BlsI GCNGC 4 cut(s) 201, 516, 569, 928
BmcAI AGTACT 1 cut(s) 599
Bme1390I CCNGG 2 cut(s) 62, 1184
BmiI GGNNCC 2 cut(s) 364, 439
BmrFI CCNGG 2 cut(s) 62, 1184
BmsI GCATC 4 cut(s) 160, 433, 781, 832
BplI GAGNNNNNCTC 2 cut(s) 870, 902
BpmI CTGGAG 2 cut(s) 661, 897
BpuEI CTTGAG 3 cut(s) 136, 220, 1177
BsaI GGTCTC 2 cut(s) 288, 675
BsaJI CCNNGG 4 cut(s) 60, 61, 453, 827
BsaXI ACNNNNNCTCC 2 cut(s) 655, 685
Bsc4I CCNNNNNNNGG 2 cut(s) 908, 1071
Bse118I RCCGGY 1 cut(s) 517
Bse1I ACTGG 2 cut(s) 659, 1065
BseBI CCWGG 2 cut(s) 62, 1184
BseDI CCNNGG 4 cut(s) 60, 61, 453, 827
BseGI GGATG 4 cut(s) 441, 473, 796, 823
BseLI CCNNNNNNNGG 2 cut(s) 908, 1071
BseMII CTCAG 3 cut(s) 498, 546, 725
BseNI ACTGG 2 cut(s) 659, 1065
BseXI GCAGC 3 cut(s) 211, 579, 913
BseYI CCCAGC 4 cut(s) 76, 502, 706, 1187
Bsh1236I CGCG 1 cut(s) 884
BshFI GGCC 2 cut(s) 48, 971
BshNI GGYRCC 1 cut(s) 362
BsiSI CCGG 1 cut(s) 518
BslFI GGGAC 2 cut(s) 78, 1175
BslI CCNNNNNNNGG 2 cut(s) 908, 1071
BsmAI GTCTC 4 cut(s) 288, 675, 873, 965
BsmBI CGTCTC 1 cut(s) 873
BsmFI GGGAC 2 cut(s) 78, 1175
BsnI GGCC 2 cut(s) 48, 971
Bso31I GGTCTC 2 cut(s) 288, 675
Bsp143I GATC 4 cut(s) 533, 580, 617, 1090
BspACI CCGC 3 cut(s) 57, 515, 1195
BspANI GGCC 2 cut(s) 48, 971
BspCNI CTCAG 4 cut(s) 497, 547, 724, 1242
BspFNI CGCG 1 cut(s) 884
BspLI GGNNCC 2 cut(s) 364, 439
BspMAI CTGCAG 1 cut(s) 541
BspPI GGATC 1 cut(s) 575
BspT107I GGYRCC 1 cut(s) 362
BspTI CTTAAG 1 cut(s) 272
BspTNI GGTCTC 2 cut(s) 288, 675
BsrFI RCCGGY 1 cut(s) 517
BsrI ACTGG 2 cut(s) 659, 1065
BssAI RCCGGY 1 cut(s) 517
BssECI CCNNGG 4 cut(s) 60, 61, 453, 827
BssMI GATC 4 cut(s) 533, 580, 617, 1090
BssT1I CCWWGG 2 cut(s) 453, 827
Bst2UI CCWGG 2 cut(s) 62, 1184
Bst4CI ACNGT 3 cut(s) 299, 330, 941
Bst6I CTCTTC 2 cut(s) 219, 382
BstAFI CTTAAG 1 cut(s) 272
BstC8I GCNNGC 2 cut(s) 346, 737
BstDEI CTNAG 5 cut(s) 91, 484, 555, 711, 1229
BstF5I GGATG 4 cut(s) 441, 473, 796, 823
BstFNI CGCG 1 cut(s) 884
BstHHI GCGC 1 cut(s) 886
BstKTI GATC 4 cut(s) 536, 583, 620, 1093
BstMAI GTCTC 4 cut(s) 288, 675, 873, 965
BstMBI GATC 4 cut(s) 533, 580, 617, 1090
BstMWI GCNNNNNNNGC 4 cut(s) 87, 161, 170, 881
BstNI CCWGG 2 cut(s) 62, 1184
BstSCI CCNGG 2 cut(s) 60, 1182
BstSFI CTRYAG 1 cut(s) 537
BstUI CGCG 1 cut(s) 884
BstV1I GCAGC 3 cut(s) 211, 579, 913
BstX2I RGATCY 2 cut(s) 533, 617
BstXI CCANNNNNNTGG 1 cut(s) 460
BstYI RGATCY 2 cut(s) 533, 617
BsuRI GGCC 2 cut(s) 48, 971
BtsCI GGATG 4 cut(s) 441, 473, 796, 823
BtsIMutI CAGTG 4 cut(s) 326, 492, 780, 1072
Cac8I GCNNGC 2 cut(s) 346, 737
CfoI GCGC 1 cut(s) 886
Cfr10I RCCGGY 1 cut(s) 517
CseI GACGC 1 cut(s) 890
Csp6I GTAC 3 cut(s) 598, 658, 1101
CviAII CATG 6 cut(s) 144, 290, 572, 586, 592, 895
CviQI GTAC 3 cut(s) 598, 658, 1101
DdeI CTNAG 5 cut(s) 91, 484, 555, 711, 1229
DpnI GATC 4 cut(s) 535, 582, 619, 1092
DpnII GATC 4 cut(s) 533, 580, 617, 1090
Eam1104I CTCTTC 2 cut(s) 219, 382
EarI CTCTTC 2 cut(s) 219, 382
Eco130I CCWWGG 2 cut(s) 453, 827
Eco147I AGGCCT 1 cut(s) 971
Eco31I GGTCTC 2 cut(s) 288, 675
Eco32I GATATC 1 cut(s) 258
Eco57I CTGAAG 1 cut(s) 236
EcoRII CCWGG 2 cut(s) 60, 1182
EcoRV GATATC 1 cut(s) 258
EcoT14I CCWWGG 2 cut(s) 453, 827
ErhI CCWWGG 2 cut(s) 453, 827
Esp3I CGTCTC 1 cut(s) 873
FaeI CATG 6 cut(s) 147, 293, 575, 589, 595, 898
FaqI GGGAC 2 cut(s) 78, 1175
FatI CATG 6 cut(s) 143, 289, 571, 585, 591, 894
Fnu4HI GCNGC 4 cut(s) 200, 515, 568, 927
FokI GGATG 4 cut(s) 428, 480, 803, 810
Fsp4HI GCNGC 4 cut(s) 200, 515, 568, 927
FspBI CTAG 2 cut(s) 357, 695
GlaI GCGC 1 cut(s) 885
GluI GCNGC 4 cut(s) 200, 515, 568, 927
GsaI CCCAGC 4 cut(s) 80, 506, 710, 1191
GsuI CTGGAG 2 cut(s) 661, 897
HaeIII GGCC 2 cut(s) 48, 971
HapII CCGG 1 cut(s) 518
HgaI GACGC 1 cut(s) 890
HhaI GCGC 1 cut(s) 886
Hin1II CATG 6 cut(s) 147, 293, 575, 589, 595, 898
Hin6I GCGC 1 cut(s) 884
HinP1I GCGC 1 cut(s) 884
HinfI GANTC 4 cut(s) 101, 211, 401, 982
HpaII CCGG 1 cut(s) 518
HphI GGTGA 3 cut(s) 197, 977, 1022
Hpy166II GTNNAC 3 cut(s) 481, 652, 1013
Hpy188I TCNGA 6 cut(s) 255, 262, 743, 754, 987, 1232
Hpy188III TCNNGA 3 cut(s) 237, 562, 1156
Hpy8I GTNNAC 3 cut(s) 481, 652, 1013
Hpy99I CGWCG 1 cut(s) 437
HpyAV CCTTC 3 cut(s) 154, 1001, 1198
HpyCH4III ACNGT 3 cut(s) 299, 330, 941
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 7 cut(s) 4, 134, 424, 494, 539, 595, 929
HpyF10VI GCNNNNNNNGC 4 cut(s) 87, 161, 170, 881
HpyF3I CTNAG 5 cut(s) 91, 484, 555, 711, 1229
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 6 cut(s) 147, 293, 575, 589, 595, 898
HspAI GCGC 1 cut(s) 884
Kzo9I GATC 4 cut(s) 533, 580, 617, 1090
LmnI GCTCC 4 cut(s) 32, 87, 891, 987
Lsp1109I GCAGC 3 cut(s) 211, 579, 913
LweI GCATC 4 cut(s) 160, 433, 781, 832
MaeI CTAG 2 cut(s) 357, 695
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 2 cut(s) 267, 324
MalI GATC 4 cut(s) 535, 582, 619, 1092
MboI GATC 4 cut(s) 533, 580, 617, 1090
MboII GAAGA 6 cut(s) 206, 369, 543, 710, 991, 1213
MflI RGATCY 2 cut(s) 533, 617
MluCI AATT 4 cut(s) 39, 240, 303, 996
MlyI GAGTC 1 cut(s) 205
MmeI TCCRAC 1 cut(s) 445
MseI TTAA 4 cut(s) 273, 414, 731, 1240
MslI CAYNNNNRTG 2 cut(s) 368, 590
MspCI CTTAAG 1 cut(s) 272
MspI CCGG 1 cut(s) 518
MspR9I CCNGG 2 cut(s) 62, 1184
MvaI CCWGG 2 cut(s) 62, 1184
MvnI CGCG 1 cut(s) 884
MwoI GCNNNNNNNGC 4 cut(s) 87, 161, 170, 881
NdeII GATC 4 cut(s) 533, 580, 617, 1090
NlaIII CATG 6 cut(s) 147, 293, 575, 589, 595, 898
NlaIV GGNNCC 2 cut(s) 364, 439
NmuCI GTSAC 2 cut(s) 267, 324
PasI CCCWGGG 1 cut(s) 61
PceI AGGCCT 1 cut(s) 971
PfeI GAWTC 3 cut(s) 101, 401, 982
PflMI CCANNNNNTGG 1 cut(s) 908
PkrI GCNGC 4 cut(s) 201, 516, 569, 928
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
Psp6I CCWGG 2 cut(s) 60, 1182
PspFI CCCAGC 4 cut(s) 76, 502, 706, 1187
PspGI CCWGG 2 cut(s) 60, 1182
PspN4I GGNNCC 2 cut(s) 364, 439
PstI CTGCAG 1 cut(s) 541
PsuI RGATCY 2 cut(s) 533, 617
RsaI GTAC 3 cut(s) 599, 659, 1102
RsaNI GTAC 3 cut(s) 598, 658, 1101
RseI CAYNNNNRTG 2 cut(s) 368, 590
SaqAI TTAA 4 cut(s) 273, 414, 731, 1240
SatI GCNGC 4 cut(s) 200, 515, 568, 927
Sau3AI GATC 4 cut(s) 533, 580, 617, 1090
ScaI AGTACT 1 cut(s) 599
SchI GAGTC 1 cut(s) 205
ScrFI CCNGG 2 cut(s) 62, 1184
SfaNI GCATC 4 cut(s) 160, 433, 781, 832
SfcI CTRYAG 1 cut(s) 537
SmiMI CAYNNNNRTG 2 cut(s) 368, 590
SmlI CTYRAG 4 cut(s) 115, 235, 272, 1156
SmoI CTYRAG 4 cut(s) 115, 235, 272, 1156
Sse9I AATT 4 cut(s) 39, 240, 303, 996
SseBI AGGCCT 1 cut(s) 971
SsiI CCGC 3 cut(s) 57, 515, 1195
SspI AATATT 1 cut(s) 850
SspMI CTAG 2 cut(s) 357, 695
StuI AGGCCT 1 cut(s) 971
StyD4I CCNGG 2 cut(s) 60, 1182
StyI CCWWGG 2 cut(s) 453, 827
TaaI ACNGT 3 cut(s) 299, 330, 941
TaiI ACGT 1 cut(s) 21
TaqI TCGA 1 cut(s) 544
TasI AATT 4 cut(s) 39, 240, 303, 996
TatI WGTACW 2 cut(s) 597, 1100
TauI GCSGC 1 cut(s) 517
TfiI GAWTC 3 cut(s) 101, 401, 982
Tru1I TTAA 4 cut(s) 273, 414, 731, 1240
Tru9I TTAA 4 cut(s) 273, 414, 731, 1240
TscAI CASTG 4 cut(s) 333, 492, 787, 1072
TseFI GTSAC 2 cut(s) 267, 324
TseI GCWGC 3 cut(s) 199, 567, 926
Tsp45I GTSAC 2 cut(s) 267, 324
TspDTI ATGAA 3 cut(s) 580, 771, 1020
TspGWI ACGGA 1 cut(s) 450
TspRI CASTG 4 cut(s) 333, 492, 787, 1072
Van91I CCANNNNNTGG 1 cut(s) 908
Vha464I CTTAAG 1 cut(s) 272
XapI RAATTY 3 cut(s) 39, 240, 303
XspI CTAG 2 cut(s) 357, 695
ZrmI AGTACT 1 cut(s) 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.