Rh6CG234200

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000348
Physical Location & Seq
Reverse (-)
39739728 .. 39741143
1416 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG234200.1

Sequence Viewer

Length: 321 bp
ATGAAGTTCGTTGTGTGCAAAGGAAGCTGTTGTTGGAATCCCTTGCAAATGAACTTCCTAGTGGCACAACCAGGTTCTCATCAAAAGTTGTTTCAATCGAAGAATCAGGCTACTTTAAGCTTCTACATCTTGCTGATGGAACCATCCTTAAAGTTAAGAGAGTCCACCACAAGACCAATAGGAAAATCCGCTATTAGAGGTCAGGCAAACTTCAAGAGCAATCATGGGTTTGATCCCAAATCCATGCGGTTCTTCGGGCATGTTGAACCACCAGGGATGTGCGTGTCCGGAAAGATCAATAGTAAACCGCATAACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

106

Amino Acids

11.88

Weight (kDa)

9.98

Isoelectric Point (pI)

31.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 287
AciI CCGC 3 cut(s) 189, 247, 308
AclWI GGATC 1 cut(s) 227
AgsI TTSAA 3 cut(s) 95, 214, 266
AjnI CCWGG 2 cut(s) 70, 271
AjuI GAANNNNNNNTTGG 2 cut(s) 16, 48
AluBI AGCT 2 cut(s) 27, 120
AluI AGCT 2 cut(s) 27, 120
AlwI GGATC 1 cut(s) 227
Aor13HI TCCGGA 1 cut(s) 287
BccI CCATC 2 cut(s) 130, 151
BciT130I CCWGG 2 cut(s) 72, 273
BfaI CTAG 1 cut(s) 59
Bme1390I CCNGG 2 cut(s) 72, 273
BmiI GGNNCC 1 cut(s) 141
BmrFI CCNGG 2 cut(s) 72, 273
BsaJI CCNNGG 1 cut(s) 272
BsaWI WCCGGW 1 cut(s) 287
BseAI TCCGGA 1 cut(s) 287
BseBI CCWGG 2 cut(s) 72, 273
BseDI CCNNGG 1 cut(s) 272
BseGI GGATG 2 cut(s) 143, 282
BsiSI CCGG 1 cut(s) 288
Bsp13I TCCGGA 1 cut(s) 287
Bsp143I GATC 2 cut(s) 232, 294
BspACI CCGC 3 cut(s) 189, 247, 308
BspEI TCCGGA 1 cut(s) 287
BspLI GGNNCC 1 cut(s) 141
BspPI GGATC 1 cut(s) 227
BssECI CCNNGG 1 cut(s) 272
BssMI GATC 2 cut(s) 232, 294
Bst2UI CCWGG 2 cut(s) 72, 273
BstF5I GGATG 2 cut(s) 143, 282
BstKTI GATC 2 cut(s) 235, 297
BstMBI GATC 2 cut(s) 232, 294
BstMWI GCNNNNNNNGC 1 cut(s) 24
BstNI CCWGG 2 cut(s) 72, 273
BstNSI RCATGY 1 cut(s) 263
BstSCI CCNGG 2 cut(s) 70, 271
BtsCI GGATG 2 cut(s) 143, 282
CsiI ACCWGGT 1 cut(s) 70
CviAII CATG 3 cut(s) 224, 244, 260
CviJI RGCY 3 cut(s) 27, 110, 120
CviKI_1 RGCY 3 cut(s) 27, 110, 120
DpnI GATC 2 cut(s) 234, 296
DpnII GATC 2 cut(s) 232, 294
EcoRII CCWGG 2 cut(s) 70, 271
FaeI CATG 3 cut(s) 227, 247, 263
FaiI YATR 4 cut(s) 225, 245, 261, 312
FatI CATG 3 cut(s) 223, 243, 259
FokI GGATG 2 cut(s) 130, 289
FspBI CTAG 1 cut(s) 59
HapII CCGG 1 cut(s) 288
Hin1II CATG 3 cut(s) 227, 247, 263
HindIII AAGCTT 1 cut(s) 118
HinfI GANTC 3 cut(s) 37, 103, 161
HpaII CCGG 1 cut(s) 288
Hpy166II GTNNAC 2 cut(s) 165, 305
Hpy188III TCNNGA 2 cut(s) 214, 288
Hpy8I GTNNAC 2 cut(s) 165, 305
HpyCH4V TGCA 2 cut(s) 18, 46
HpyF10VI GCNNNNNNNGC 1 cut(s) 24
Hsp92II CATG 3 cut(s) 227, 247, 263
Kpn2I TCCGGA 1 cut(s) 287
Kzo9I GATC 2 cut(s) 232, 294
LpnPI CCDG 7 cut(s) 57, 84, 92, 188, 258, 285, 301
MabI ACCWGGT 1 cut(s) 70
MaeI CTAG 1 cut(s) 59
MalI GATC 2 cut(s) 234, 296
MboI GATC 2 cut(s) 232, 294
MboII GAAGA 2 cut(s) 112, 244
MlyI GAGTC 1 cut(s) 170
MmeI TCCRAC 1 cut(s) 14
MnlI CCTC 1 cut(s) 191
MroI TCCGGA 1 cut(s) 287
MseI TTAA 3 cut(s) 116, 149, 155
MspI CCGG 1 cut(s) 288
MspR9I CCNGG 2 cut(s) 72, 273
MvaI CCWGG 2 cut(s) 72, 273
MwoI GCNNNNNNNGC 1 cut(s) 24
NdeII GATC 2 cut(s) 232, 294
NlaIII CATG 3 cut(s) 227, 247, 263
NlaIV GGNNCC 1 cut(s) 141
NspI RCATGY 1 cut(s) 263
PfeI GAWTC 2 cut(s) 37, 103
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
Psp6I CCWGG 2 cut(s) 70, 271
PspGI CCWGG 2 cut(s) 70, 271
PspN4I GGNNCC 1 cut(s) 141
SaqAI TTAA 3 cut(s) 116, 149, 155
Sau3AI GATC 2 cut(s) 232, 294
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 2 cut(s) 72, 273
SetI ASST 4 cut(s) 29, 76, 122, 202
SexAI ACCWGGT 1 cut(s) 70
SsiI CCGC 3 cut(s) 189, 247, 308
SspMI CTAG 1 cut(s) 59
StyD4I CCNGG 2 cut(s) 70, 271
TaqI TCGA 1 cut(s) 98
TfiI GAWTC 2 cut(s) 37, 103
Tru1I TTAA 3 cut(s) 116, 149, 155
Tru9I TTAA 3 cut(s) 116, 149, 155
TspDTI ATGAA 2 cut(s) 17, 65
XceI RCATGY 1 cut(s) 263
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.