Rmu_sc0000258.1_g000096

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000258.1
OG0000348
Physical Location & Seq
Reverse (-)
452092 .. 459053
6962 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000258.1_g000096.1.cds

Sequence Viewer

Length: 1242 bp
atgcaagtagtagaggacgttgtgattgtgggagctggaatttctggcctcacaaccgccctgggacttcacaggctgggcattaggagcttagtgctggaatcttttgatagcttgaggataacagggtttgcactcacaacatggactaatgcgtggaaggctttagatgccattggtcttggtgatcatttacggcagcaacacctggctcttcttgggaatgtggttttctcgagaatttcagggcttcagatgtctgaaatgtcacttaaggggaaaggaaaacatggagaccatgaagtttattgtgtgaaaaggaagttgttgttggaaacccttgcacgtgaactccctaatggtaccattaggttctcttcaaaggttgtttccattgaggaatcaggctactttaagctggtgcatcttgccgacggaaccatcctcaaggccaaggttttggttggatgtgacggagtaaattcagtggttgcaaaatggctgggcttcaagcctccggtctttacaggaagatctgccattcgaggtagtgctgagttcaagagcagccatgagtttgatcccatgttcatggagtactttgggaatggtgttagatctggtgtagttccttgtaatgataaaaatgtttactggtacttcacttggtctccctcgggccaagagaaagagctagaggaaaacccagctcagttgaagcgatatatgttaagcaagctcggaaaggtatcagatgaagtaagggccgttatggaaaacactgatttggttgcttttatattctctccattgagatataggcatccttgggaacttatttggggaaatattagcaaaggtaatgtatgtgtggctggagacgcgctccaccccatgaccccagacattggacaaggtggctgtgctgcattagaggacggtgttgtattagcaaggtgtcttggtgaggctttgttgaagaatcggagccaagaaattagagatgaaggtgaacaaggaaaagtggaatataaaatgattgaaagagggttgaataagtatgccagtgagaggaaatggagaagttttgatcttattagtacagcttatgtggttggttttatacaggaggctgatggaaaaataatgactttcttgagggacaagtttttctctccaatcctggccgcgtcgcggttgaagaaggctgattatgattgtggtaagctcagaagatcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

413

Amino Acids

45.92

Weight (kDa)

8.9

Isoelectric Point (pI)

34.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 362
AccB1I GGYRCC 1 cut(s) 362
AccB7I CCANNNNNTGG 1 cut(s) 908
AccII CGCG 3 cut(s) 884, 1190, 1195
AciI CCGC 3 cut(s) 57, 1188, 1195
AclWI GGATC 1 cut(s) 575
AcoI YGGCCR 1 cut(s) 1185
AcsI RAATTY 3 cut(s) 39, 240, 481
AcuI CTGAAG 1 cut(s) 236
AcvI CACGTG 1 cut(s) 347
AfaI GTAC 4 cut(s) 364, 599, 659, 1102
AfiI CCNNNNNNNGG 3 cut(s) 908, 1071, 1194
AflII CTTAAG 1 cut(s) 272
AgsI TTSAA 8 cut(s) 381, 511, 562, 718, 979, 1043, 1054, 1201
AjnI CCWGG 3 cut(s) 60, 207, 1182
AjuI GAANNNNNNNTTGG 2 cut(s) 314, 346
AluBI AGCT 9 cut(s) 35, 90, 114, 418, 694, 710, 739, 1106, 1228
AluI AGCT 9 cut(s) 35, 90, 114, 418, 694, 710, 739, 1106, 1228
Alw26I GTCTC 3 cut(s) 288, 675, 873
AlwI GGATC 1 cut(s) 575
Ama87I CYCGRG 2 cut(s) 235, 676
AoxI GGCC 5 cut(s) 46, 450, 679, 765, 1185
ApeKI GCWGC 3 cut(s) 199, 567, 926
ApoI RAATTY 3 cut(s) 39, 240, 481
Asp718I GGTACC 1 cut(s) 362
AspLEI GCGC 1 cut(s) 886
AspS9I GGNCC 2 cut(s) 679, 765
AsuHPI GGTGA 3 cut(s) 197, 977, 1022
AvaI CYCGRG 2 cut(s) 235, 676
BanI GGYRCC 1 cut(s) 362
BbrPI CACGTG 1 cut(s) 347
BbvI GCAGC 3 cut(s) 211, 579, 913
BccI CCATC 2 cut(s) 449, 1130
BceAI ACGGC 2 cut(s) 212, 752
BciT130I CCWGG 3 cut(s) 62, 209, 1184
BclI TGATCA 1 cut(s) 187
BcoDI GTCTC 3 cut(s) 288, 675, 873
BfaI CTAG 1 cut(s) 695
BfrI CTTAAG 1 cut(s) 272
BglII AGATCT 3 cut(s) 533, 617, 1235
BisI GCNGC 4 cut(s) 200, 568, 927, 1188
BlsI GCNGC 4 cut(s) 201, 569, 928, 1189
BmcAI AGTACT 1 cut(s) 599
Bme1390I CCNGG 3 cut(s) 62, 209, 1184
BmeT110I CYCGRG 2 cut(s) 235, 676
BmgT120I GGNCC 2 cut(s) 679, 765
BmiI GGNNCC 3 cut(s) 364, 439, 989
BmrFI CCNGG 3 cut(s) 62, 209, 1184
BmsI GCATC 3 cut(s) 160, 433, 832
BplI GAGNNNNNCTC 2 cut(s) 870, 902
BpmI CTGGAG 1 cut(s) 897
BpuEI CTTGAG 3 cut(s) 136, 431, 1177
BsaAI YACGTR 1 cut(s) 347
BsaI GGTCTC 2 cut(s) 288, 675
BsaJI CCNNGG 5 cut(s) 60, 61, 453, 675, 827
BsaWI WCCGGW 1 cut(s) 517
BsaXI ACNNNNNCTCC 4 cut(s) 336, 366, 655, 685
Bsc4I CCNNNNNNNGG 3 cut(s) 908, 1071, 1194
Bse1I ACTGG 2 cut(s) 659, 1065
BseBI CCWGG 3 cut(s) 62, 209, 1184
BseDI CCNNGG 5 cut(s) 60, 61, 453, 675, 827
BseGI GGATG 3 cut(s) 441, 473, 823
BseLI CCNNNNNNNGG 3 cut(s) 908, 1071, 1194
BseMII CTCAG 2 cut(s) 546, 725
BseNI ACTGG 2 cut(s) 659, 1065
BseXI GCAGC 3 cut(s) 211, 579, 913
BseYI CCCAGC 3 cut(s) 76, 502, 706
Bsh1236I CGCG 3 cut(s) 884, 1190, 1195
BshFI GGCC 5 cut(s) 48, 452, 681, 767, 1187
BshNI GGYRCC 1 cut(s) 362
BsiHKCI CYCGRG 2 cut(s) 235, 676
BsiSI CCGG 1 cut(s) 518
BslFI GGGAC 2 cut(s) 78, 1175
BslI CCNNNNNNNGG 3 cut(s) 908, 1071, 1194
BsmAI GTCTC 3 cut(s) 288, 675, 873
BsmBI CGTCTC 1 cut(s) 873
BsmFI GGGAC 2 cut(s) 78, 1175
BsnI GGCC 5 cut(s) 48, 452, 681, 767, 1187
Bso31I GGTCTC 2 cut(s) 288, 675
BsoBI CYCGRG 2 cut(s) 235, 676
Bsp143I GATC 6 cut(s) 187, 533, 580, 617, 1090, 1235
BspACI CCGC 3 cut(s) 57, 1188, 1195
BspANI GGCC 5 cut(s) 48, 452, 681, 767, 1187
BspCNI CTCAG 3 cut(s) 547, 724, 1242
BspFNI CGCG 3 cut(s) 884, 1190, 1195
BspLI GGNNCC 3 cut(s) 364, 439, 989
BspPI GGATC 1 cut(s) 575
BspQI GCTCTTC 1 cut(s) 219
BspT107I GGYRCC 1 cut(s) 362
BspTI CTTAAG 1 cut(s) 272
BspTNI GGTCTC 2 cut(s) 288, 675
BsrI ACTGG 2 cut(s) 659, 1065
BssECI CCNNGG 5 cut(s) 60, 61, 453, 675, 827
BssMI GATC 6 cut(s) 187, 533, 580, 617, 1090, 1235
BssT1I CCWWGG 2 cut(s) 453, 827
Bst2UI CCWGG 3 cut(s) 62, 209, 1184
Bst4CI ACNGT 1 cut(s) 941
Bst6I CTCTTC 2 cut(s) 219, 382
BstAFI CTTAAG 1 cut(s) 272
BstBAI YACGTR 1 cut(s) 347
BstC8I GCNNGC 1 cut(s) 737
BstDEI CTNAG 4 cut(s) 91, 555, 711, 1229
BstF5I GGATG 3 cut(s) 441, 473, 823
BstFNI CGCG 3 cut(s) 884, 1190, 1195
BstHHI GCGC 1 cut(s) 886
BstKTI GATC 6 cut(s) 190, 536, 583, 620, 1093, 1238
BstMAI GTCTC 3 cut(s) 288, 675, 873
BstMBI GATC 6 cut(s) 187, 533, 580, 617, 1090, 1235
BstMWI GCNNNNNNNGC 4 cut(s) 87, 161, 170, 881
BstNI CCWGG 3 cut(s) 62, 209, 1184
BstSCI CCNGG 3 cut(s) 60, 207, 1182
BstUI CGCG 3 cut(s) 884, 1190, 1195
BstV1I GCAGC 3 cut(s) 211, 579, 913
BstX2I RGATCY 3 cut(s) 533, 617, 1235
BstXI CCANNNNNNTGG 2 cut(s) 460, 592
BstYI RGATCY 3 cut(s) 533, 617, 1235
BsuRI GGCC 5 cut(s) 48, 452, 681, 767, 1187
BtsCI GGATG 3 cut(s) 441, 473, 823
BtsIMutI CAGTG 3 cut(s) 492, 780, 1072
Cac8I GCNNGC 1 cut(s) 737
CfoI GCGC 1 cut(s) 886
Cfr13I GGNCC 2 cut(s) 679, 765
CseI GACGC 2 cut(s) 890, 1179
Csp6I GTAC 4 cut(s) 363, 598, 658, 1101
CviAII CATG 7 cut(s) 144, 290, 299, 572, 586, 592, 895
CviQI GTAC 4 cut(s) 363, 598, 658, 1101
DdeI CTNAG 4 cut(s) 91, 555, 711, 1229
DpnI GATC 6 cut(s) 189, 535, 582, 619, 1092, 1237
DpnII GATC 6 cut(s) 187, 533, 580, 617, 1090, 1235
EaeI YGGCCR 1 cut(s) 1185
Eam1104I CTCTTC 2 cut(s) 219, 382
EarI CTCTTC 2 cut(s) 219, 382
Eco130I CCWWGG 2 cut(s) 453, 827
Eco31I GGTCTC 2 cut(s) 288, 675
Eco57I CTGAAG 1 cut(s) 236
Eco72I CACGTG 1 cut(s) 347
Eco88I CYCGRG 2 cut(s) 235, 676
EcoRII CCWGG 3 cut(s) 60, 207, 1182
EcoT14I CCWWGG 2 cut(s) 453, 827
ErhI CCWWGG 2 cut(s) 453, 827
Esp3I CGTCTC 1 cut(s) 873
FaeI CATG 7 cut(s) 147, 293, 302, 575, 589, 595, 898
FaqI GGGAC 2 cut(s) 78, 1175
FatI CATG 7 cut(s) 143, 289, 298, 571, 585, 591, 894
FbaI TGATCA 1 cut(s) 187
Fnu4HI GCNGC 4 cut(s) 200, 568, 927, 1188
FokI GGATG 3 cut(s) 428, 480, 810
Fsp4HI GCNGC 4 cut(s) 200, 568, 927, 1188
FspBI CTAG 1 cut(s) 695
GlaI GCGC 1 cut(s) 885
GluI GCNGC 4 cut(s) 200, 568, 927, 1188
GsaI CCCAGC 3 cut(s) 80, 506, 710
GsuI CTGGAG 1 cut(s) 897
HaeIII GGCC 5 cut(s) 48, 452, 681, 767, 1187
HapII CCGG 1 cut(s) 518
HgaI GACGC 2 cut(s) 890, 1179
HhaI GCGC 1 cut(s) 886
Hin1II CATG 7 cut(s) 147, 293, 302, 575, 589, 595, 898
Hin6I GCGC 1 cut(s) 884
HinP1I GCGC 1 cut(s) 884
HinfI GANTC 3 cut(s) 101, 401, 982
HpaII CCGG 1 cut(s) 518
HphI GGTGA 3 cut(s) 197, 977, 1022
Hpy166II GTNNAC 3 cut(s) 350, 652, 1013
Hpy188I TCNGA 6 cut(s) 255, 262, 743, 754, 987, 1232
Hpy188III TCNNGA 4 cut(s) 235, 237, 562, 1156
Hpy8I GTNNAC 3 cut(s) 350, 652, 1013
Hpy99I CGWCG 2 cut(s) 437, 1195
HpyAV CCTTC 3 cut(s) 154, 1001, 1198
HpyCH4III ACNGT 1 cut(s) 941
HpyCH4IV ACGT 2 cut(s) 18, 346
HpyCH4V TGCA 6 cut(s) 4, 134, 344, 424, 494, 929
HpyF10VI GCNNNNNNNGC 4 cut(s) 87, 161, 170, 881
HpyF3I CTNAG 4 cut(s) 91, 555, 711, 1229
HpySE526I ACGT 2 cut(s) 18, 346
Hsp92II CATG 7 cut(s) 147, 293, 302, 575, 589, 595, 898
HspAI GCGC 1 cut(s) 884
KpnI GGTACC 1 cut(s) 366
Ksp22I TGATCA 1 cut(s) 187
Kzo9I GATC 6 cut(s) 187, 533, 580, 617, 1090, 1235
LguI GCTCTTC 1 cut(s) 219
LmnI GCTCC 4 cut(s) 32, 87, 891, 987
Lsp1109I GCAGC 3 cut(s) 211, 579, 913
LweI GCATC 3 cut(s) 160, 433, 832
MaeI CTAG 1 cut(s) 695
MaeII ACGT 2 cut(s) 18, 346
MaeIII GTNAC 2 cut(s) 267, 470
MalI GATC 6 cut(s) 189, 535, 582, 619, 1092, 1237
MboI GATC 6 cut(s) 187, 533, 580, 617, 1090, 1235
MboII GAAGA 5 cut(s) 206, 369, 543, 991, 1213
MflI RGATCY 3 cut(s) 533, 617, 1235
MluCI AATT 4 cut(s) 39, 240, 481, 996
MmeI TCCRAC 2 cut(s) 312, 445
MseI TTAA 4 cut(s) 273, 414, 731, 1240
MslI CAYNNNNRTG 1 cut(s) 590
MspCI CTTAAG 1 cut(s) 272
MspI CCGG 1 cut(s) 518
MspR9I CCNGG 3 cut(s) 62, 209, 1184
MvaI CCWGG 3 cut(s) 62, 209, 1184
MvnI CGCG 3 cut(s) 884, 1190, 1195
MwoI GCNNNNNNNGC 4 cut(s) 87, 161, 170, 881
NdeII GATC 6 cut(s) 187, 533, 580, 617, 1090, 1235
NlaIII CATG 7 cut(s) 147, 293, 302, 575, 589, 595, 898
NlaIV GGNNCC 3 cut(s) 364, 439, 989
NmuCI GTSAC 2 cut(s) 267, 470
PaeR7I CTCGAG 1 cut(s) 235
PasI CCCWGGG 1 cut(s) 61
PciSI GCTCTTC 1 cut(s) 219
PfeI GAWTC 3 cut(s) 101, 401, 982
PflMI CCANNNNNTGG 1 cut(s) 908
PkrI GCNGC 4 cut(s) 201, 569, 928, 1189
PmaCI CACGTG 1 cut(s) 347
PmlI CACGTG 1 cut(s) 347
Ppu21I YACGTR 1 cut(s) 347
Psp6I CCWGG 3 cut(s) 60, 207, 1182
PspCI CACGTG 1 cut(s) 347
PspFI CCCAGC 3 cut(s) 76, 502, 706
PspGI CCWGG 3 cut(s) 60, 207, 1182
PspN4I GGNNCC 3 cut(s) 364, 439, 989
PspPI GGNCC 2 cut(s) 679, 765
PsuI RGATCY 3 cut(s) 533, 617, 1235
RsaI GTAC 4 cut(s) 364, 599, 659, 1102
RsaNI GTAC 4 cut(s) 363, 598, 658, 1101
RseI CAYNNNNRTG 1 cut(s) 590
SapI GCTCTTC 1 cut(s) 219
SaqAI TTAA 4 cut(s) 273, 414, 731, 1240
SatI GCNGC 4 cut(s) 200, 568, 927, 1188
Sau3AI GATC 6 cut(s) 187, 533, 580, 617, 1090, 1235
Sau96I GGNCC 2 cut(s) 679, 765
ScaI AGTACT 1 cut(s) 599
ScrFI CCNGG 3 cut(s) 62, 209, 1184
SfaNI GCATC 3 cut(s) 160, 433, 832
Sfr274I CTCGAG 1 cut(s) 235
SlaI CTCGAG 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 590
SmlI CTYRAG 5 cut(s) 115, 235, 272, 446, 1156
SmoI CTYRAG 5 cut(s) 115, 235, 272, 446, 1156
Sse9I AATT 4 cut(s) 39, 240, 481, 996
SsiI CCGC 3 cut(s) 57, 1188, 1195
SspI AATATT 1 cut(s) 850
SspMI CTAG 1 cut(s) 695
StyD4I CCNGG 3 cut(s) 60, 207, 1182
StyI CCWWGG 2 cut(s) 453, 827
TaaI ACNGT 1 cut(s) 941
TaiI ACGT 2 cut(s) 21, 349
TaqI TCGA 2 cut(s) 236, 544
TasI AATT 4 cut(s) 39, 240, 481, 996
TatI WGTACW 2 cut(s) 597, 1100
TauI GCSGC 1 cut(s) 1190
TfiI GAWTC 3 cut(s) 101, 401, 982
Tru1I TTAA 4 cut(s) 273, 414, 731, 1240
Tru9I TTAA 4 cut(s) 273, 414, 731, 1240
TscAI CASTG 3 cut(s) 492, 787, 1072
TseFI GTSAC 2 cut(s) 267, 470
TseI GCWGC 3 cut(s) 199, 567, 926
Tsp45I GTSAC 2 cut(s) 267, 470
TspDTI ATGAA 4 cut(s) 315, 580, 771, 1020
TspGWI ACGGA 2 cut(s) 450, 489
TspRI CASTG 3 cut(s) 492, 787, 1072
Van91I CCANNNNNTGG 1 cut(s) 908
Vha464I CTTAAG 1 cut(s) 272
XapI RAATTY 3 cut(s) 39, 240, 481
XhoI CTCGAG 1 cut(s) 235
XspI CTAG 1 cut(s) 695
ZrmI AGTACT 1 cut(s) 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.