RchiOBHm_Chr6g0278591

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000348
Physical Location & Seq
Reverse (-)
41698037 .. 41702371
4335 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24991

Sequence Viewer

Length: 1284 bp
ATGGTTCTTGGATATATCTTTGTATTGTGCTTAATTACCATGGAAGTAGTCGAAGATGTTGTGATTGTGGGAGCTGGAATTGCTGGCCTTACAACCTCCTTGGGACTTCACAGGCTGGGTATTAGAAGCTTAGTGCTGGAATCAGCTGATAGCTTGAGGGTAACAGGGTTTGCACTCGCAATATGGACTAATGCGTGGAGGGCTTTAGATGCCCTTGGTATTGGCAATGATATCCGGCAGCAACACCAGGCTCTTCATGGGAATGTGGCTTTCTCAAGAATTTCAGGGCTTCGGATGTTTGAGAAGTCGTATGATGTCAAAGGAAAACTTGGAGACCATGAAGTTTATTGTGTGAAAAGGAAGTTGTTGTTGGAAACCATTGCAAGGGAACTCCCTAATGGTACCATTAGGTTCTCATCAAAGGTTGTTTCCATTGAGGAATCAGGCTACTTTAAGCGGGTGCATCTTGCAGATGGAACCATCCTCAAAGCCAAGGTTTTGGTTGGTTGTGATGGAGTGAACTCAGTGGTGGCAAAATGGCTGGGCTTCAAGAAGCCAGTTTTTAAAGGGAGATCCGCCGTTAGAGGTTGTGCTGATTTCAACAGCAGTCATGGTTTTGATCCCAAGTTCATGCAGTACTTTGGGAATGGTATTAAAACTGGCACCATTCCTTGTGATGATAAAACTGTTTACTGGTTCTTCGGTTGGTATCCCTCCAGCCAAGAGGAAGAGCTAAAGAAAAACCCAGCTCAGTTGAAGCAATATATGTTAAGCAAGCTCGGAAAGGTATCAGATGAAGCAAGGGCTGTTGTGGAAAACACTGATTTGGATGCTTTTAGAGCCGCTCCAGTGACATACAGGCATCCTTGGGATCTTCTTTGGGGAAATATTAGTAAAGGTAATGTATGCGTTGCTGGAGACGCTCTCCACCCCATGGTCCCAGACATTGGCCAAGGCGGCTGTGCTGCATTAGAAGACGGTGTTGTATTAGCAAGGTTTCTCGGTGAGGCACTGTTGAAGAACCAGGAGCAAGAAAATAAAGATAAAGGTGAAGAAGGAAAAGAAAAATATAAGAGGATTGAAATGGGGCTGAATAAGTATGCCAGTGAGAGGAAATGGAGAAGCATAGATCTCACTAGTACATCTAGTGTGGTTAGTTATATACAGGTAACTGATGGTGGAAAAATAACTGCTTTCTTGAGGGACAAGATTTTCGCTCCATTCCTGACCTGGTTGCTGTTTAAGAAGGCTGATTATGATTGTGGGAAGCTCAGGAGCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

427

Amino Acids

47.36

Weight (kDa)

8.97

Isoelectric Point (pI)

27.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 19 - 339 2.4e-27 FAD binding domain
Lycopene_cycl PF05834 19 - 177 1.6e-06 Lycopene cyclase protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 401
AccB1I GGYRCC 2 cut(s) 401, 662
AccB7I CCANNNNNTGG 2 cut(s) 934, 947
AccBSI CCGCTC 1 cut(s) 845
AciI CCGC 4 cut(s) 457, 576, 843, 957
AclWI GGATC 3 cut(s) 567, 614, 879
AcoI YGGCCR 1 cut(s) 949
AcsI RAATTY 1 cut(s) 279
AfaI GTAC 3 cut(s) 403, 638, 1141
AfiI CCNNNNNNNGG 4 cut(s) 384, 934, 947, 1110
AgsI TTSAA 5 cut(s) 550, 601, 757, 1018, 1082
AhlI ACTAGT 1 cut(s) 1136
AjnI CCWGG 3 cut(s) 246, 1023, 1229
AjuI GAANNNNNNNTTGG 2 cut(s) 353, 385
AluBI AGCT 8 cut(s) 74, 129, 146, 153, 733, 749, 778, 1270
AluI AGCT 8 cut(s) 74, 129, 146, 153, 733, 749, 778, 1270
Alw26I GTCTC 2 cut(s) 327, 912
AlwI GGATC 3 cut(s) 567, 614, 879
AoxI GGCC 2 cut(s) 85, 949
ApeKI GCWGC 2 cut(s) 238, 965
ApoI RAATTY 1 cut(s) 279
ArsI GACNNNNNNTTYG 2 cut(s) 1196, 1228
Asp718I GGTACC 1 cut(s) 401
AspS9I GGNCC 1 cut(s) 937
AsuHPI GGTGA 2 cut(s) 1016, 1061
AvaII GGWCC 1 cut(s) 937
BalI TGGCCA 1 cut(s) 951
BanI GGYRCC 2 cut(s) 401, 662
BanII GRGCYC 1 cut(s) 1280
BbsI GAAGAC 1 cut(s) 981
BbvI GCAGC 2 cut(s) 250, 952
BccI CCATC 4 cut(s) 467, 488, 506, 1169
BceAI ACGGC 1 cut(s) 563
BciT130I CCWGG 3 cut(s) 248, 1025, 1231
BciVI GTATCC 1 cut(s) 720
BcoDI GTCTC 2 cut(s) 327, 912
BcuI ACTAGT 1 cut(s) 1136
BfaI CTAG 2 cut(s) 1137, 1146
BfuI GTATCC 1 cut(s) 720
BglI GCCNNNNNGGC 1 cut(s) 957
BglII AGATCT 1 cut(s) 1129
BisI GCNGC 4 cut(s) 239, 843, 958, 966
BlsI GCNGC 4 cut(s) 240, 844, 959, 967
BmcAI AGTACT 1 cut(s) 638
Bme1390I CCNGG 3 cut(s) 248, 1025, 1231
Bme18I GGWCC 1 cut(s) 937
BmgT120I GGNCC 1 cut(s) 937
BmiI GGNNCC 5 cut(s) 403, 478, 664, 939, 1277
BmrFI CCNGG 3 cut(s) 248, 1025, 1231
BmsI GCATC 4 cut(s) 199, 472, 820, 871
BpiI GAAGAC 1 cut(s) 981
BplI GAGNNNNNCTC 2 cut(s) 909, 941
BpmI CTGGAG 3 cut(s) 700, 831, 936
Bpu10I CCTNAGC 1 cut(s) 1271
BpuEI CTTGAG 3 cut(s) 175, 259, 1219
BsaI GGTCTC 1 cut(s) 327
BsaJI CCNNGG 7 cut(s) 39, 99, 214, 492, 866, 933, 952
Bsc4I CCNNNNNNNGG 4 cut(s) 384, 934, 947, 1110
Bse1I ACTGG 5 cut(s) 557, 664, 698, 848, 1104
Bse3DI GCAATG 2 cut(s) 232, 378
BseBI CCWGG 3 cut(s) 248, 1025, 1231
BseDI CCNNGG 7 cut(s) 39, 99, 214, 492, 866, 933, 952
BseGI GGATG 4 cut(s) 300, 480, 835, 862
BseLI CCNNNNNNNGG 4 cut(s) 384, 934, 947, 1110
BseMI GCAATG 2 cut(s) 232, 378
BseMII CTCAG 2 cut(s) 537, 764
BseNI ACTGG 5 cut(s) 557, 664, 698, 848, 1104
BseXI GCAGC 2 cut(s) 250, 952
BseYI CCCAGC 3 cut(s) 115, 541, 745
BshFI GGCC 2 cut(s) 87, 951
BshNI GGYRCC 2 cut(s) 401, 662
BsiSI CCGG 1 cut(s) 235
BslFI GGGAC 3 cut(s) 117, 923, 1217
BslI CCNNNNNNNGG 4 cut(s) 384, 934, 947, 1110
BsmAI GTCTC 2 cut(s) 327, 912
BsmBI CGTCTC 1 cut(s) 912
BsmFI GGGAC 3 cut(s) 117, 923, 1217
BsnI GGCC 2 cut(s) 87, 951
Bso31I GGTCTC 1 cut(s) 327
Bsp1286I GDGCHC 1 cut(s) 1280
Bsp143I GATC 4 cut(s) 572, 619, 871, 1129
Bsp19I CCATGG 2 cut(s) 39, 933
BspACI CCGC 4 cut(s) 457, 576, 843, 957
BspANI GGCC 2 cut(s) 87, 951
BspCNI CTCAG 3 cut(s) 536, 763, 1284
BspLI GGNNCC 5 cut(s) 403, 478, 664, 939, 1277
BspPI GGATC 3 cut(s) 567, 614, 879
BspQI GCTCTTC 2 cut(s) 258, 723
BspT107I GGYRCC 2 cut(s) 401, 662
BspTNI GGTCTC 1 cut(s) 327
BsrBI CCGCTC 1 cut(s) 845
BsrDI GCAATG 2 cut(s) 232, 378
BsrI ACTGG 5 cut(s) 557, 664, 698, 848, 1104
BssECI CCNNGG 7 cut(s) 39, 99, 214, 492, 866, 933, 952
BssMI GATC 4 cut(s) 572, 619, 871, 1129
BssT1I CCWWGG 7 cut(s) 39, 99, 214, 492, 866, 933, 952
Bst2UI CCWGG 3 cut(s) 248, 1025, 1231
Bst4CI ACNGT 3 cut(s) 688, 980, 1014
Bst6I CTCTTC 2 cut(s) 258, 723
BstC8I GCNNGC 2 cut(s) 85, 776
BstDEI CTNAG 4 cut(s) 130, 523, 750, 1271
BstDSI CCRYGG 2 cut(s) 39, 933
BstF5I GGATG 4 cut(s) 300, 480, 835, 862
BstKTI GATC 4 cut(s) 575, 622, 874, 1132
BstMAI GTCTC 2 cut(s) 327, 912
BstMBI GATC 4 cut(s) 572, 619, 871, 1129
BstMWI GCNNNNNNNGC 6 cut(s) 80, 200, 209, 839, 920, 957
BstNI CCWGG 3 cut(s) 248, 1025, 1231
BstSCI CCNGG 3 cut(s) 246, 1023, 1229
BstV1I GCAGC 2 cut(s) 250, 952
BstV2I GAAGAC 1 cut(s) 981
BstX2I RGATCY 3 cut(s) 572, 871, 1129
BstXI CCANNNNNNTGG 1 cut(s) 499
BstYI RGATCY 3 cut(s) 572, 871, 1129
BsuI GTATCC 1 cut(s) 720
BsuRI GGCC 2 cut(s) 87, 951
BtgI CCRYGG 2 cut(s) 39, 933
BtsCI GGATG 4 cut(s) 300, 480, 835, 862
BtsIMutI CAGTG 5 cut(s) 531, 819, 855, 1010, 1111
Cac8I GCNNGC 2 cut(s) 85, 776
Cfr13I GGNCC 1 cut(s) 937
CseI GACGC 1 cut(s) 929
CsiI ACCWGGT 1 cut(s) 1229
Csp6I GTAC 3 cut(s) 402, 637, 1140
CviAII CATG 6 cut(s) 40, 257, 338, 611, 631, 934
CviQI GTAC 3 cut(s) 402, 637, 1140
DdeI CTNAG 4 cut(s) 130, 523, 750, 1271
DpnI GATC 4 cut(s) 574, 621, 873, 1131
DpnII GATC 4 cut(s) 572, 619, 871, 1129
DraI TTTAAA 1 cut(s) 565
EaeI YGGCCR 1 cut(s) 949
Eam1104I CTCTTC 2 cut(s) 258, 723
EarI CTCTTC 2 cut(s) 258, 723
EciI GGCGGA 1 cut(s) 565
Eco130I CCWWGG 7 cut(s) 39, 99, 214, 492, 866, 933, 952
Eco24I GRGCYC 1 cut(s) 1280
Eco31I GGTCTC 1 cut(s) 327
Eco32I GATATC 1 cut(s) 232
Eco47I GGWCC 1 cut(s) 937
EcoRII CCWGG 3 cut(s) 246, 1023, 1229
EcoRV GATATC 1 cut(s) 232
EcoT14I CCWWGG 7 cut(s) 39, 99, 214, 492, 866, 933, 952
EcoT38I GRGCYC 1 cut(s) 1280
ErhI CCWWGG 7 cut(s) 39, 99, 214, 492, 866, 933, 952
Esp3I CGTCTC 1 cut(s) 912
FaeI CATG 6 cut(s) 43, 260, 341, 614, 634, 937
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FaqI GGGAC 3 cut(s) 117, 923, 1217
FatI CATG 6 cut(s) 39, 256, 337, 610, 630, 933
FauI CCCGC 1 cut(s) 450
Fnu4HI GCNGC 4 cut(s) 239, 843, 958, 966
FokI GGATG 4 cut(s) 307, 467, 842, 849
FriOI GRGCYC 1 cut(s) 1280
Fsp4HI GCNGC 4 cut(s) 239, 843, 958, 966
FspBI CTAG 2 cut(s) 1137, 1146
GluI GCNGC 4 cut(s) 239, 843, 958, 966
GsaI CCCAGC 3 cut(s) 119, 545, 749
GsuI CTGGAG 3 cut(s) 700, 831, 936
HaeIII GGCC 2 cut(s) 87, 951
HapII CCGG 1 cut(s) 235
HgaI GACGC 1 cut(s) 929
Hin1II CATG 6 cut(s) 43, 260, 341, 614, 634, 937
HindIII AAGCTT 1 cut(s) 127
HinfI GANTC 2 cut(s) 140, 440
HpaII CCGG 1 cut(s) 235
HphI GGTGA 2 cut(s) 1016, 1061
Hpy166II GTNNAC 2 cut(s) 520, 691
Hpy188I TCNGA 3 cut(s) 294, 782, 793
Hpy188III TCNNGA 5 cut(s) 276, 550, 1198, 1225, 1273
Hpy8I GTNNAC 2 cut(s) 520, 691
HpyAV CCTTC 2 cut(s) 1049, 1240
HpyCH4III ACNGT 3 cut(s) 688, 980, 1014
HpyCH4V TGCA 6 cut(s) 173, 383, 463, 470, 634, 968
HpyF10VI GCNNNNNNNGC 6 cut(s) 80, 200, 209, 839, 920, 957
HpyF3I CTNAG 4 cut(s) 130, 523, 750, 1271
Hsp92II CATG 6 cut(s) 43, 260, 341, 614, 634, 937
KpnI GGTACC 1 cut(s) 405
Kzo9I GATC 4 cut(s) 572, 619, 871, 1129
LguI GCTCTTC 2 cut(s) 258, 723
LmnI GCTCC 5 cut(s) 71, 850, 1027, 1222, 1275
Lsp1109I GCAGC 2 cut(s) 250, 952
LweI GCATC 4 cut(s) 199, 472, 820, 871
MabI ACCWGGT 1 cut(s) 1229
MaeI CTAG 2 cut(s) 1137, 1146
MaeIII GTNAC 3 cut(s) 160, 850, 1168
MalI GATC 4 cut(s) 574, 621, 873, 1131
MbiI CCGCTC 1 cut(s) 845
MboI GATC 4 cut(s) 572, 619, 871, 1129
MboII GAAGA 8 cut(s) 65, 245, 691, 740, 866, 986, 1030, 1064
MflI RGATCY 3 cut(s) 572, 871, 1129
MhlI GDGCHC 1 cut(s) 1280
MlsI TGGCCA 1 cut(s) 951
MluCI AATT 3 cut(s) 33, 78, 279
MluNI TGGCCA 1 cut(s) 951
MmeI TCCRAC 1 cut(s) 351
Mox20I TGGCCA 1 cut(s) 951
MscI TGGCCA 1 cut(s) 951
MseI TTAA 7 cut(s) 32, 453, 564, 654, 770, 1242, 1282
MslI CAYNNNNRTG 1 cut(s) 261
Msp20I TGGCCA 1 cut(s) 951
MspA1I CMGCKG 1 cut(s) 146
MspI CCGG 1 cut(s) 235
MspR9I CCNGG 3 cut(s) 248, 1025, 1231
MvaI CCWGG 3 cut(s) 248, 1025, 1231
MwoI GCNNNNNNNGC 6 cut(s) 80, 200, 209, 839, 920, 957
NcoI CCATGG 2 cut(s) 39, 933
NdeII GATC 4 cut(s) 572, 619, 871, 1129
NlaIII CATG 6 cut(s) 43, 260, 341, 614, 634, 937
NlaIV GGNNCC 5 cut(s) 403, 478, 664, 939, 1277
NmuCI GTSAC 1 cut(s) 850
PciSI GCTCTTC 2 cut(s) 258, 723
PfeI GAWTC 2 cut(s) 140, 440
PflMI CCANNNNNTGG 2 cut(s) 934, 947
PkrI GCNGC 4 cut(s) 240, 844, 959, 967
Psp6I CCWGG 3 cut(s) 246, 1023, 1229
PspFI CCCAGC 3 cut(s) 115, 541, 745
PspGI CCWGG 3 cut(s) 246, 1023, 1229
PspN4I GGNNCC 5 cut(s) 403, 478, 664, 939, 1277
PspPI GGNCC 1 cut(s) 937
PsuI RGATCY 3 cut(s) 572, 871, 1129
PvuII CAGCTG 1 cut(s) 146
RsaI GTAC 3 cut(s) 403, 638, 1141
RsaNI GTAC 3 cut(s) 402, 637, 1140
RseI CAYNNNNRTG 1 cut(s) 261
SapI GCTCTTC 2 cut(s) 258, 723
SaqAI TTAA 7 cut(s) 32, 453, 564, 654, 770, 1242, 1282
SatI GCNGC 4 cut(s) 239, 843, 958, 966
Sau3AI GATC 4 cut(s) 572, 619, 871, 1129
Sau96I GGNCC 1 cut(s) 937
ScaI AGTACT 1 cut(s) 638
ScrFI CCNGG 3 cut(s) 248, 1025, 1231
SduI GDGCHC 1 cut(s) 1280
SexAI ACCWGGT 1 cut(s) 1229
SfaNI GCATC 4 cut(s) 199, 472, 820, 871
SinI GGWCC 1 cut(s) 937
SmiMI CAYNNNNRTG 1 cut(s) 261
SmlI CTYRAG 3 cut(s) 154, 274, 1198
SmoI CTYRAG 3 cut(s) 154, 274, 1198
SpeI ACTAGT 1 cut(s) 1136
Sse9I AATT 3 cut(s) 33, 78, 279
SsiI CCGC 4 cut(s) 457, 576, 843, 957
SspI AATATT 1 cut(s) 889
SspMI CTAG 2 cut(s) 1137, 1146
StyD4I CCNGG 3 cut(s) 246, 1023, 1229
StyI CCWWGG 7 cut(s) 39, 99, 214, 492, 866, 933, 952
TaaI ACNGT 3 cut(s) 688, 980, 1014
TaqI TCGA 1 cut(s) 51
TasI AATT 3 cut(s) 33, 78, 279
TatI WGTACW 2 cut(s) 636, 1139
TauI GCSGC 2 cut(s) 845, 960
TfiI GAWTC 2 cut(s) 140, 440
Tru1I TTAA 7 cut(s) 32, 453, 564, 654, 770, 1242, 1282
Tru9I TTAA 7 cut(s) 32, 453, 564, 654, 770, 1242, 1282
TscAI CASTG 5 cut(s) 531, 826, 855, 1017, 1111
TseFI GTSAC 1 cut(s) 850
TseI GCWGC 2 cut(s) 238, 965
Tsp45I GTSAC 1 cut(s) 850
TspDTI ATGAA 4 cut(s) 245, 354, 619, 810
TspRI CASTG 5 cut(s) 531, 826, 855, 1017, 1111
Van91I CCANNNNNTGG 2 cut(s) 934, 947
VpaK11BI GGWCC 1 cut(s) 937
XapI RAATTY 1 cut(s) 279
XcmI CCANNNNNNNNNTGG 2 cut(s) 254, 1227
XspI CTAG 2 cut(s) 1137, 1146
ZrmI AGTACT 1 cut(s) 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.