FvH4_3g33121

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000348
Physical Location & Seq
Forward (+)
28543499 .. 28544480
982 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g33121.t1

Sequence Viewer

Length: 393 bp
ATGGAAGTAGTACAAGACGTTGTGATTGTGGGAGTTGGAATCTCTGGCCTCACAACCTCCTTGGGACTTCAACCAGACTCGCTCTCTTATACTCTTTGCTTTGTCTGTGTGAAGATTTTGTGTTTCGAGATTTTCTGGATCAAATTCCGATCTCTCCGTCGCCGGAAGCTATGCTGTCGCCAGCGGGTGTGCGGTGACGATTCCGGTTGGTGTTTCCAGTCACAAGCTTTCATCAGCTGCTCCATGGAAGTCAAGGAGGCTCACATGTTTTGCATGTATGTGTTTGATAATATGAAATTTTGGTTCAGGTTGGGTATTAGGAGCTTAGTGCTGGAGTCATCTGATAGCTTGAGGGCAACAGGGTTTGCATTTACAACTTGGACTAATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

131

Amino Acids

14.97

Weight (kDa)

8.1

Isoelectric Point (pI)

47.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 184, 192
AclWI GGATC 1 cut(s) 146
AcsI RAATTY 2 cut(s) 143, 296
AfaI GTAC 1 cut(s) 12
AflIII ACRYGT 1 cut(s) 264
AgsI TTSAA 1 cut(s) 71
AluBI AGCT 5 cut(s) 169, 227, 237, 324, 348
AluI AGCT 5 cut(s) 169, 227, 237, 324, 348
AlwI GGATC 1 cut(s) 146
AoxI GGCC 1 cut(s) 46
ApeKI GCWGC 1 cut(s) 237
ApoI RAATTY 2 cut(s) 143, 296
AsuHPI GGTGA 1 cut(s) 206
BbvI GCAGC 1 cut(s) 224
BisI GCNGC 1 cut(s) 238
BlsI GCNGC 1 cut(s) 239
BpmI CTGGAG 1 cut(s) 353
BpuEI CTTGAG 1 cut(s) 370
BsaJI CCNNGG 2 cut(s) 60, 243
BsaWI WCCGGW 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 217
BseDI CCNNGG 2 cut(s) 60, 243
BseNI ACTGG 1 cut(s) 217
BseXI GCAGC 1 cut(s) 224
BshFI GGCC 1 cut(s) 48
BsiSI CCGG 2 cut(s) 163, 204
BslFI GGGAC 1 cut(s) 78
BsmFI GGGAC 1 cut(s) 78
BsnI GGCC 1 cut(s) 48
Bsp143I GATC 2 cut(s) 138, 149
Bsp19I CCATGG 1 cut(s) 243
BspACI CCGC 2 cut(s) 184, 192
BspANI GGCC 1 cut(s) 48
BspPI GGATC 1 cut(s) 146
BsrI ACTGG 1 cut(s) 217
BssECI CCNNGG 2 cut(s) 60, 243
BssMI GATC 2 cut(s) 138, 149
BssT1I CCWWGG 2 cut(s) 60, 243
BstC8I GCNNGC 1 cut(s) 182
BstDEI CTNAG 1 cut(s) 325
BstDSI CCRYGG 1 cut(s) 243
BstKTI GATC 2 cut(s) 141, 152
BstMBI GATC 2 cut(s) 138, 149
BstNSI RCATGY 2 cut(s) 268, 277
BstV1I GCAGC 1 cut(s) 224
BsuRI GGCC 1 cut(s) 48
BtgI CCRYGG 1 cut(s) 243
Cac8I GCNNGC 1 cut(s) 182
Csp6I GTAC 1 cut(s) 11
CviAII CATG 3 cut(s) 244, 265, 274
CviJI RGCY 7 cut(s) 48, 169, 227, 237, 260, 324, 348
CviKI_1 RGCY 7 cut(s) 48, 169, 227, 237, 260, 324, 348
CviQI GTAC 1 cut(s) 11
DdeI CTNAG 1 cut(s) 325
DpnI GATC 2 cut(s) 140, 151
DpnII GATC 2 cut(s) 138, 149
Eco130I CCWWGG 2 cut(s) 60, 243
EcoT14I CCWWGG 2 cut(s) 60, 243
ErhI CCWWGG 2 cut(s) 60, 243
FaeI CATG 3 cut(s) 247, 268, 277
FaiI YATR 7 cut(s) 90, 172, 245, 266, 275, 279, 293
FaqI GGGAC 1 cut(s) 78
FatI CATG 3 cut(s) 243, 264, 273
FauI CCCGC 1 cut(s) 177
Fnu4HI GCNGC 1 cut(s) 238
Fsp4HI GCNGC 1 cut(s) 238
GluI GCNGC 1 cut(s) 238
GsuI CTGGAG 1 cut(s) 353
HaeIII GGCC 1 cut(s) 48
HapII CCGG 2 cut(s) 163, 204
Hin1II CATG 3 cut(s) 247, 268, 277
HindIII AAGCTT 1 cut(s) 225
HinfI GANTC 4 cut(s) 39, 77, 200, 335
HpaII CCGG 2 cut(s) 163, 204
HphI GGTGA 1 cut(s) 206
Hpy188I TCNGA 2 cut(s) 149, 343
Hpy188III TCNNGA 2 cut(s) 127, 136
Hpy99I CGWCG 1 cut(s) 162
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 2 cut(s) 273, 368
HpyF3I CTNAG 1 cut(s) 325
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 3 cut(s) 247, 268, 277
Kzo9I GATC 2 cut(s) 138, 149
LmnI GCTCC 2 cut(s) 245, 321
Lsp1109I GCAGC 1 cut(s) 224
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 2 cut(s) 194, 219
MalI GATC 2 cut(s) 140, 151
MboI GATC 2 cut(s) 138, 149
MboII GAAGA 1 cut(s) 124
MluCI AATT 2 cut(s) 143, 296
MlyI GAGTC 2 cut(s) 71, 344
MmeI TCCRAC 1 cut(s) 16
MnlI CCTC 4 cut(s) 59, 67, 250, 345
MslI CAYNNNNRTG 1 cut(s) 278
MspA1I CMGCKG 2 cut(s) 184, 237
MspI CCGG 2 cut(s) 163, 204
NcoI CCATGG 1 cut(s) 243
NdeII GATC 2 cut(s) 138, 149
NlaIII CATG 3 cut(s) 247, 268, 277
NmuCI GTSAC 2 cut(s) 194, 219
NspI RCATGY 2 cut(s) 268, 277
PciI ACATGT 1 cut(s) 264
PfeI GAWTC 2 cut(s) 39, 200
PkrI GCNGC 1 cut(s) 239
PleI GAGTC 2 cut(s) 71, 343
PpsI GAGTC 2 cut(s) 71, 343
PscI ACATGT 1 cut(s) 264
PvuII CAGCTG 1 cut(s) 237
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
RseI CAYNNNNRTG 1 cut(s) 278
SatI GCNGC 1 cut(s) 238
Sau3AI GATC 2 cut(s) 138, 149
SchI GAGTC 2 cut(s) 71, 344
SetI ASST 8 cut(s) 21, 59, 171, 229, 239, 311, 326, 350
SmiMI CAYNNNNRTG 1 cut(s) 278
SmlI CTYRAG 1 cut(s) 349
SmoI CTYRAG 1 cut(s) 349
Sse9I AATT 2 cut(s) 143, 296
SsiI CCGC 2 cut(s) 184, 192
StyI CCWWGG 2 cut(s) 60, 243
TaiI ACGT 1 cut(s) 21
TaqI TCGA 1 cut(s) 126
TasI AATT 2 cut(s) 143, 296
TatI WGTACW 1 cut(s) 10
TfiI GAWTC 2 cut(s) 39, 200
TseFI GTSAC 2 cut(s) 194, 219
TseI GCWGC 1 cut(s) 237
Tsp45I GTSAC 2 cut(s) 194, 219
TspDTI ATGAA 2 cut(s) 220, 308
TspGWI ACGGA 1 cut(s) 146
XapI RAATTY 2 cut(s) 143, 296
XceI RCATGY 2 cut(s) 268, 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.