Rroxscaffold_7G00190310

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000348
Physical Location & Seq
Forward (+)
30415947 .. 30418846
2900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00190310.1

Sequence Viewer

Length: 1230 bp
ATGGGTCGAGGAGTTATTACGAGGGGAATTGGGATAGTGGTGATTTCTATTGCTTGGACTTCACAGGCTGGGAATTCGGAGCTTAGTGTTGGAAACATCGAGAGTTTGAGGACGACCGGATTTGCATTCTCAACATGGACAAATGCCTGGAAGGCCTTGGATGCCATTGGAATTGGGGAATCTCTTCGGAGACAGCACGAGACACTTCATAGGAATGTTACTTACTCAACAGTTTCTGGGCTTCCAGTGTTTGAGATGTCACTGAAGGACAAGGGAAAACAAGGAGACCATGAAGTGCGTTGCGTGCAGAGGAAGTTGTTGTTGGAAACCCTTGCAAATGAACTTCCCTGTGGCACAATCAGGTTCTCCTCCAAGGTGGTTTCCATTGAGGAATCAGGCTACTTTAAGCTGCTGCATCTTGCTGATGGAACCATCCTCAAGGCCAAGGTCTTGGTTGGGTGTGACGGAGTGAACTCTGTGGTGGCGAAATGGCTGGGCTTGAAGCCACCGGCCTTTACAGGGAGACATGGTATAAGAGGTCGTGCGAAATACAAGAACAGTCATGGGTTTGATCCCAACTTCATGCAGTTCTTTGGCAATGGTGTTAGATCTGGTGCCATCCCTTGTGATGATAAAACAGTTTATTGGTTCTTCACTTGGGCTCCAACCAACCAAGAGAAAGAGCTAGAGAAGAACCCAGCTGAGATGAAGCAATTTATGCTGAACAAGCTGGGAAATATACCTGATGAAATAAAGGCTGTGATTGGAAACACTGAATTGGATGCTTTTGTTTCCTCTCCTTTGAGATTTAGGCATCCATGGGAGCTTCTTTGGGGAAATATTAGCAAAGGCAATGTTTGTGTAGCTGGAGATGCGCTCCATCCTATGACCCCGGACCTTGGCCAAGGAGGCTGCTCCGCAATAGAAGACGGTGTTGTGTTGGCAAGATGTCTTGGTGAGGCCTGGCTGAAAAACTCACGGCAAGAAATGAAAGGTAAAAGTGAACAAGGAAAGGAGGAATATATGAAAATTGAGATGGGGTTGAGTAAGTTTGCCAATGAGAGGAGATGGAGAGGCTTTGACCTGATTAGTACAGGTTATATGGTTGCTTTAATTCAAGGGAGTGAAGGAAAAATGATGTCTATCTTGAACAAATATTTGGCTCCAATTCTAGCTAGGTGGGTGCTACAGAAGGCTGATTTTGATTGTGGAAAGCTCAGCAGCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

409

Amino Acids

45.27

Weight (kDa)

9.05

Isoelectric Point (pI)

36.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 101 - 321 2e-14 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 614
AciI CCGC 1 cut(s) 918
AclWI GGATC 1 cut(s) 566
AcoI YGGCCR 1 cut(s) 901
AcsI RAATTY 1 cut(s) 73
AcuI CTGAAG 1 cut(s) 284
AfaI GTAC 1 cut(s) 1093
AfiI CCNNNNNNNGG 3 cut(s) 519, 899, 1062
AgsI TTSAA 3 cut(s) 502, 1118, 1150
AjnI CCWGG 2 cut(s) 146, 962
AjuI GAANNNNNNNTTGG 4 cut(s) 305, 337, 1142, 1174
AluBI AGCT 9 cut(s) 82, 409, 685, 701, 730, 826, 866, 1175, 1216
AluI AGCT 9 cut(s) 82, 409, 685, 701, 730, 826, 866, 1175, 1216
Alw26I GTCTC 4 cut(s) 184, 194, 279, 517
AlwI GGATC 1 cut(s) 566
AlwNI CAGNNNCTG 2 cut(s) 236, 1227
AoxI GGCC 5 cut(s) 153, 441, 510, 901, 960
ApeKI GCWGC 4 cut(s) 409, 412, 912, 1221
ApoI RAATTY 1 cut(s) 73
Asp700I GAANNNNTTC 1 cut(s) 183
AspLEI GCGC 1 cut(s) 877
AspS9I GGNCC 1 cut(s) 895
AsuC2I CCSGG 1 cut(s) 893
AsuHPI GGTGA 2 cut(s) 52, 968
AvaII GGWCC 1 cut(s) 895
BalI TGGCCA 1 cut(s) 903
BanI GGYRCC 1 cut(s) 614
BanII GRGCYC 1 cut(s) 664
BauI CACGAG 1 cut(s) 197
BbsI GAAGAC 1 cut(s) 933
BbvI GCAGC 3 cut(s) 396, 399, 899
BccI CCATC 6 cut(s) 419, 440, 626, 888, 1030, 1062
BceAI ACGGC 1 cut(s) 995
BciT130I CCWGG 2 cut(s) 148, 964
BcnI CCSGG 1 cut(s) 893
BcoDI GTCTC 4 cut(s) 184, 194, 279, 517
BfaI CTAG 3 cut(s) 686, 1172, 1176
BfmI CTRYAG 1 cut(s) 1187
BglI GCCNNNNNGGC 2 cut(s) 152, 909
BglII AGATCT 1 cut(s) 608
BisI GCNGC 4 cut(s) 410, 413, 913, 1222
BlpI GCTNAGC 1 cut(s) 1217
BlsI GCNGC 4 cut(s) 411, 414, 914, 1223
Bme1390I CCNGG 3 cut(s) 148, 893, 964
Bme18I GGWCC 1 cut(s) 895
BmgT120I GGNCC 1 cut(s) 895
BmiI GGNNCC 4 cut(s) 430, 616, 663, 1164
BmrFI CCNGG 3 cut(s) 148, 893, 964
BmsI GCATC 5 cut(s) 151, 424, 772, 823, 862
BpiI GAAGAC 1 cut(s) 933
BplI GAGNNNNNCTC 2 cut(s) 861, 893
BpmI CTGGAG 1 cut(s) 888
Bpu1102I GCTNAGC 1 cut(s) 1217
BpuEI CTTGAG 1 cut(s) 422
BpuMI CCSGG 1 cut(s) 893
BsaBI GATNNNNATC 1 cut(s) 1142
BsaI GGTCTC 1 cut(s) 279
BsaJI CCNNGG 7 cut(s) 156, 372, 444, 818, 891, 898, 904
BsaWI WCCGGW 1 cut(s) 116
BsaXI ACNNNNNCTCC 4 cut(s) 514, 544, 646, 676
Bsc4I CCNNNNNNNGG 3 cut(s) 519, 899, 1062
Bse118I RCCGGY 1 cut(s) 508
Bse1I ACTGG 1 cut(s) 245
Bse3DI GCAATG 2 cut(s) 604, 859
Bse8I GATNNNNATC 1 cut(s) 1142
BseBI CCWGG 2 cut(s) 148, 964
BseDI CCNNGG 7 cut(s) 156, 372, 444, 818, 891, 898, 904
BseGI GGATG 6 cut(s) 166, 432, 618, 787, 814, 880
BseJI GATNNNNATC 1 cut(s) 1142
BseLI CCNNNNNNNGG 3 cut(s) 519, 899, 1062
BseMI GCAATG 2 cut(s) 604, 859
BseMII CTCAG 1 cut(s) 693
BseNI ACTGG 1 cut(s) 245
BseRI GAGGAG 3 cut(s) 24, 358, 1078
BseXI GCAGC 3 cut(s) 396, 399, 899
BseYI CCCAGC 4 cut(s) 68, 493, 697, 730
BsgI GTGCAG 1 cut(s) 326
Bsh1285I CGRYCG 1 cut(s) 117
BshFI GGCC 5 cut(s) 155, 443, 512, 903, 962
BshNI GGYRCC 1 cut(s) 614
BsiEI CGRYCG 1 cut(s) 117
BsiSI CCGG 3 cut(s) 117, 509, 893
BslI CCNNNNNNNGG 3 cut(s) 519, 899, 1062
BsmAI GTCTC 4 cut(s) 184, 194, 279, 517
BsmI GAATGC 1 cut(s) 125
BsnI GGCC 5 cut(s) 155, 443, 512, 903, 962
Bso31I GGTCTC 1 cut(s) 279
Bsp1286I GDGCHC 1 cut(s) 664
Bsp143I GATC 2 cut(s) 571, 608
Bsp1720I GCTNAGC 1 cut(s) 1217
Bsp19I CCATGG 1 cut(s) 818
BspACI CCGC 1 cut(s) 918
BspANI GGCC 5 cut(s) 155, 443, 512, 903, 962
BspCNI CTCAG 2 cut(s) 694, 1230
BspLI GGNNCC 4 cut(s) 430, 616, 663, 1164
BspPI GGATC 1 cut(s) 566
BspT107I GGYRCC 1 cut(s) 614
BspTNI GGTCTC 1 cut(s) 279
BsrDI GCAATG 2 cut(s) 604, 859
BsrFI RCCGGY 1 cut(s) 508
BsrI ACTGG 1 cut(s) 245
BssAI RCCGGY 1 cut(s) 508
BssECI CCNNGG 7 cut(s) 156, 372, 444, 818, 891, 898, 904
BssMI GATC 2 cut(s) 571, 608
BssSI CACGAG 1 cut(s) 197
BssT1I CCWWGG 6 cut(s) 156, 372, 444, 818, 898, 904
Bst2BI CACGAG 1 cut(s) 197
Bst2UI CCWGG 2 cut(s) 148, 964
Bst4CI ACNGT 4 cut(s) 232, 560, 640, 932
Bst6I CTCTTC 1 cut(s) 189
BstAPI GCANNNNNTGC 1 cut(s) 718
BstC8I GCNNGC 1 cut(s) 305
BstDEI CTNAG 3 cut(s) 83, 702, 1217
BstDSI CCRYGG 1 cut(s) 818
BstF5I GGATG 6 cut(s) 166, 432, 618, 787, 814, 880
BstHHI GCGC 1 cut(s) 877
BstKTI GATC 2 cut(s) 574, 611
BstMAI GTCTC 4 cut(s) 184, 194, 279, 517
BstMBI GATC 2 cut(s) 571, 608
BstMCI CGRYCG 1 cut(s) 117
BstMWI GCNNNNNNNGC 7 cut(s) 152, 161, 304, 718, 727, 872, 909
BstNI CCWGG 2 cut(s) 148, 964
BstSCI CCNGG 3 cut(s) 146, 891, 962
BstSFI CTRYAG 1 cut(s) 1187
BstV1I GCAGC 3 cut(s) 396, 399, 899
BstV2I GAAGAC 1 cut(s) 933
BstX2I RGATCY 1 cut(s) 608
BstXI CCANNNNNNTGG 1 cut(s) 451
BstYI RGATCY 1 cut(s) 608
BsuRI GGCC 5 cut(s) 155, 443, 512, 903, 962
BtgI CCRYGG 1 cut(s) 818
BtsCI GGATG 6 cut(s) 166, 432, 618, 787, 814, 880
BtsIMutI CAGTG 3 cut(s) 252, 260, 771
Cac8I GCNNGC 1 cut(s) 305
CaiI CAGNNNCTG 2 cut(s) 236, 1227
CfoI GCGC 1 cut(s) 877
Cfr10I RCCGGY 1 cut(s) 508
Cfr13I GGNCC 1 cut(s) 895
Csp6I GTAC 1 cut(s) 1092
CviAII CATG 6 cut(s) 135, 290, 527, 563, 583, 819
CviQI GTAC 1 cut(s) 1092
DdeI CTNAG 3 cut(s) 83, 702, 1217
DpnI GATC 2 cut(s) 573, 610
DpnII GATC 2 cut(s) 571, 608
EaeI YGGCCR 1 cut(s) 901
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
Eco130I CCWWGG 6 cut(s) 156, 372, 444, 818, 898, 904
Eco147I AGGCCT 2 cut(s) 155, 962
Eco24I GRGCYC 1 cut(s) 664
Eco31I GGTCTC 1 cut(s) 279
Eco47I GGWCC 1 cut(s) 895
Eco57I CTGAAG 1 cut(s) 284
EcoRI GAATTC 1 cut(s) 73
EcoRII CCWGG 2 cut(s) 146, 962
EcoT14I CCWWGG 6 cut(s) 156, 372, 444, 818, 898, 904
EcoT38I GRGCYC 1 cut(s) 664
ErhI CCWWGG 6 cut(s) 156, 372, 444, 818, 898, 904
FaeI CATG 6 cut(s) 138, 293, 530, 566, 586, 822
FatI CATG 6 cut(s) 134, 289, 526, 562, 582, 818
Fnu4HI GCNGC 4 cut(s) 410, 413, 913, 1222
FokI GGATG 6 cut(s) 173, 419, 605, 794, 801, 867
FriOI GRGCYC 1 cut(s) 664
Fsp4HI GCNGC 4 cut(s) 410, 413, 913, 1222
FspBI CTAG 3 cut(s) 686, 1172, 1176
GlaI GCGC 1 cut(s) 876
GluI GCNGC 4 cut(s) 410, 413, 913, 1222
GsaI CCCAGC 4 cut(s) 72, 497, 701, 734
GsuI CTGGAG 1 cut(s) 888
HaeIII GGCC 5 cut(s) 155, 443, 512, 903, 962
HapII CCGG 3 cut(s) 117, 509, 893
HhaI GCGC 1 cut(s) 877
Hin1II CATG 6 cut(s) 138, 293, 530, 566, 586, 822
Hin6I GCGC 1 cut(s) 875
HinP1I GCGC 1 cut(s) 875
HinfI GANTC 2 cut(s) 179, 392
HpaII CCGG 3 cut(s) 117, 509, 893
HphI GGTGA 2 cut(s) 52, 968
Hpy166II GTNNAC 2 cut(s) 472, 1004
Hpy188I TCNGA 3 cut(s) 79, 189, 1229
Hpy188III TCNNGA 2 cut(s) 100, 1147
Hpy8I GTNNAC 2 cut(s) 472, 1004
HpyAV CCTTC 4 cut(s) 145, 259, 1121, 1186
HpyCH4III ACNGT 4 cut(s) 232, 560, 640, 932
HpyCH4V TGCA 5 cut(s) 125, 307, 335, 415, 586
HpyF10VI GCNNNNNNNGC 7 cut(s) 152, 161, 304, 718, 727, 872, 909
HpyF3I CTNAG 3 cut(s) 83, 702, 1217
Hsp92II CATG 6 cut(s) 138, 293, 530, 566, 586, 822
HspAI GCGC 1 cut(s) 875
Kzo9I GATC 2 cut(s) 571, 608
LmnI GCTCC 6 cut(s) 79, 667, 823, 882, 920, 1168
Lsp1109I GCAGC 3 cut(s) 396, 399, 899
LweI GCATC 5 cut(s) 151, 424, 772, 823, 862
MaeI CTAG 3 cut(s) 686, 1172, 1176
MaeIII GTNAC 3 cut(s) 217, 258, 461
MalI GATC 2 cut(s) 573, 610
MboI GATC 2 cut(s) 571, 608
MboII GAAGA 4 cut(s) 176, 643, 703, 938
MflI RGATCY 1 cut(s) 608
MhlI GDGCHC 1 cut(s) 664
MlsI TGGCCA 1 cut(s) 903
MluCI AATT 8 cut(s) 27, 73, 171, 713, 776, 1029, 1113, 1167
MluNI TGGCCA 1 cut(s) 903
MmeI TCCRAC 3 cut(s) 70, 303, 689
Mox20I TGGCCA 1 cut(s) 903
MroXI GAANNNNTTC 1 cut(s) 183
MscI TGGCCA 1 cut(s) 903
MseI TTAA 2 cut(s) 405, 1112
MslI CAYNNNNRTG 1 cut(s) 213
Msp20I TGGCCA 1 cut(s) 903
MspA1I CMGCKG 1 cut(s) 701
MspI CCGG 3 cut(s) 117, 509, 893
MspR9I CCNGG 3 cut(s) 148, 893, 964
Mva1269I GAATGC 1 cut(s) 125
MvaI CCWGG 2 cut(s) 148, 964
MwoI GCNNNNNNNGC 7 cut(s) 152, 161, 304, 718, 727, 872, 909
NciI CCSGG 1 cut(s) 893
NcoI CCATGG 1 cut(s) 818
NdeII GATC 2 cut(s) 571, 608
NlaIII CATG 6 cut(s) 138, 293, 530, 566, 586, 822
NlaIV GGNNCC 4 cut(s) 430, 616, 663, 1164
NmuCI GTSAC 2 cut(s) 258, 461
PceI AGGCCT 2 cut(s) 155, 962
PctI GAATGC 1 cut(s) 125
PdmI GAANNNNTTC 1 cut(s) 183
PfeI GAWTC 2 cut(s) 179, 392
PkrI GCNGC 4 cut(s) 411, 414, 914, 1223
Psp6I CCWGG 2 cut(s) 146, 962
PspFI CCCAGC 4 cut(s) 68, 493, 697, 730
PspGI CCWGG 2 cut(s) 146, 962
PspN4I GGNNCC 4 cut(s) 430, 616, 663, 1164
PspPI GGNCC 1 cut(s) 895
PstNI CAGNNNCTG 2 cut(s) 236, 1227
PsuI RGATCY 1 cut(s) 608
PvuII CAGCTG 1 cut(s) 701
RsaI GTAC 1 cut(s) 1093
RsaNI GTAC 1 cut(s) 1092
RseI CAYNNNNRTG 1 cut(s) 213
SaqAI TTAA 2 cut(s) 405, 1112
SatI GCNGC 4 cut(s) 410, 413, 913, 1222
Sau3AI GATC 2 cut(s) 571, 608
Sau96I GGNCC 1 cut(s) 895
ScrFI CCNGG 3 cut(s) 148, 893, 964
SduI GDGCHC 1 cut(s) 664
SfaNI GCATC 5 cut(s) 151, 424, 772, 823, 862
SfcI CTRYAG 1 cut(s) 1187
SinI GGWCC 1 cut(s) 895
SmiMI CAYNNNNRTG 1 cut(s) 213
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
Sse9I AATT 8 cut(s) 27, 73, 171, 713, 776, 1029, 1113, 1167
SseBI AGGCCT 2 cut(s) 155, 962
SsiI CCGC 1 cut(s) 918
SspI AATATT 2 cut(s) 841, 1157
SspMI CTAG 3 cut(s) 686, 1172, 1176
StuI AGGCCT 2 cut(s) 155, 962
StyD4I CCNGG 3 cut(s) 146, 891, 962
StyI CCWWGG 6 cut(s) 156, 372, 444, 818, 898, 904
TaaI ACNGT 4 cut(s) 232, 560, 640, 932
TaqI TCGA 2 cut(s) 7, 99
TasI AATT 8 cut(s) 27, 73, 171, 713, 776, 1029, 1113, 1167
TatI WGTACW 1 cut(s) 1091
TfiI GAWTC 2 cut(s) 179, 392
Tru1I TTAA 2 cut(s) 405, 1112
Tru9I TTAA 2 cut(s) 405, 1112
TscAI CASTG 3 cut(s) 252, 267, 778
TseFI GTSAC 2 cut(s) 258, 461
TseI GCWGC 4 cut(s) 409, 412, 912, 1221
Tsp45I GTSAC 2 cut(s) 258, 461
TspDTI ATGAA 8 cut(s) 197, 306, 354, 571, 722, 762, 1004, 1040
TspGWI ACGGA 1 cut(s) 480
TspRI CASTG 3 cut(s) 252, 267, 778
VpaK11BI GGWCC 1 cut(s) 895
XapI RAATTY 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 183
XspI CTAG 3 cut(s) 686, 1172, 1176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.