RLG00000013211

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000348
Physical Location & Seq
Forward (+)
27724033 .. 27726733
2701 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013211

Sequence Viewer

Length: 1242 bp
ATGGAAGTAGTCGAAGATGTTGTGATTGTGGGAGCTGGAATTTCTGGCCTTACAACCTCCTTGGGACTTCACAGGCTGGGTATTAGAAGCTTAGTGCTGGAATCATTTGATAGCTTGAGGATAACAGGGTTTGCACTCGCAATATGGACTAATGCTTGGAGGGCTTTAGATGCGATTGGTATTGGCAATGATATGCGGCAGCAACACCAGGCTCTTCATGGGAATGTGGTTTTCTCAAGAATTTCAGGGCTTCAGATGTTTGAGAAGTCATATGAGGTCAAAGGAAAACATGGAGACCATGAAGTTCGTTGTGTGAAAAGGAAGTTGTTGTTGGAAACCCTTGCAAGTGAACTCCCTAGTGGTACCATTAGGTTCTCATCGAAGGTTGTTTCCATTGAGGAATCAGGCTACTTTAAGCTGGTGCATCTTGCAGATGGAACCATCCTCAAAGCCAAGGTTCTGGTTGGTTGTGATGGAGTGAACTCAGTGGTGGCAAAATGGCTGGGCTTCAAGAAGCCAGTTTTCACAGGGAGATCCGCCATTAGAGGTTGTGCTAATTTCAACAGCAGTCATGGTCTTGATCCCAAGTTCATGCAGTACTTTGGGAATGGTATTAAATCTGGTACCATTCCTTGTGATGATAAAACTGTTTACTGGTTCTTCGGTTGGTATCCCTCCAGCCAAGAGGAAGAGCTAAAGAAAAACCCAACTCAGTTGAAGAAATATATGTTGAGCAAGCTCGGAAAGGTATCAGATGAAGTAAGGGCTGTGGTGGAAAACACTGATTTGGATGCTTTTAGATCCTCTCCAGTGACATATAGGCATCCTTGGGAACTTCTTTGGGGAAATATTAGTAAAGGTAATGTATGTGTTGCTGGAGACGCTCTCCACCCAATGGTCCCAGACATTGGCCAAGGCGGCTGTGCTGCAATAGAAGACGGTGTTGTATTAGCAAGGTGTCTCGGTGAGGCACTGTTGAAGAACCAGGAGCAAGAAAATAAAGATAAAGGTGAAGAAGGAAAAGAAAAATATAAGAGGATTGAAATGGGGCTGAATAAGTATGCCAGTGAGAGGAAATGGAGAAGCATTGATCTCACTAGTACAGCTAATGTGGTTAGTTATATACAGGAGGCTGATGGAAAAATAATTGCTTTCTTGAGGGGCAAGTTTTTCGCTCCAATCCTGGCCAGGTTGCTGTTTAAGAAGGCTGATTATGATTGTGGGAAGCTCAGGAGCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

414

Amino Acids

45.76

Weight (kDa)

8.99

Isoelectric Point (pI)

31.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 6 - 326 5.6e-26 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 362, 623
AccB1I GGYRCC 2 cut(s) 362, 623
AccB7I CCANNNNNTGG 2 cut(s) 895, 908
AciI CCGC 3 cut(s) 196, 537, 918
AclWI GGATC 3 cut(s) 528, 575, 795
AcoI YGGCCR 2 cut(s) 910, 1185
AcsI RAATTY 2 cut(s) 39, 240
AcuI CTGAAG 1 cut(s) 236
AfaI GTAC 4 cut(s) 364, 599, 625, 1102
AfiI CCNNNNNNNGG 3 cut(s) 895, 908, 1071
AgsI TTSAA 5 cut(s) 511, 562, 718, 979, 1043
AhlI ACTAGT 1 cut(s) 1097
AjnI CCWGG 4 cut(s) 207, 984, 1182, 1187
AjuI GAANNNNNNNTTGG 2 cut(s) 314, 346
AluBI AGCT 8 cut(s) 35, 90, 114, 418, 694, 739, 1106, 1228
AluI AGCT 8 cut(s) 35, 90, 114, 418, 694, 739, 1106, 1228
Alw26I GTCTC 3 cut(s) 288, 873, 965
AlwI GGATC 3 cut(s) 528, 575, 795
AoxI GGCC 3 cut(s) 46, 910, 1185
ApeKI GCWGC 2 cut(s) 199, 926
ApoI RAATTY 2 cut(s) 39, 240
Asp718I GGTACC 2 cut(s) 362, 623
AspS9I GGNCC 1 cut(s) 898
AsuHPI GGTGA 2 cut(s) 977, 1022
AvaII GGWCC 1 cut(s) 898
BalI TGGCCA 2 cut(s) 912, 1187
BanI GGYRCC 2 cut(s) 362, 623
BanII GRGCYC 1 cut(s) 1238
BbsI GAAGAC 1 cut(s) 942
BbvI GCAGC 2 cut(s) 211, 913
BccI CCATC 4 cut(s) 428, 449, 467, 1130
BcgI CGANNNNNNTGC 2 cut(s) 1153, 1187
BciT130I CCWGG 4 cut(s) 209, 986, 1184, 1189
BciVI GTATCC 1 cut(s) 681
BcoDI GTCTC 3 cut(s) 288, 873, 965
BcuI ACTAGT 1 cut(s) 1097
BfaI CTAG 2 cut(s) 357, 1098
BfuI GTATCC 1 cut(s) 681
BglI GCCNNNNNGGC 1 cut(s) 918
BisI GCNGC 4 cut(s) 197, 200, 919, 927
BlsI GCNGC 4 cut(s) 198, 201, 920, 928
BmcAI AGTACT 1 cut(s) 599
Bme1390I CCNGG 4 cut(s) 209, 986, 1184, 1189
Bme18I GGWCC 1 cut(s) 898
BmgT120I GGNCC 1 cut(s) 898
BmiI GGNNCC 5 cut(s) 364, 439, 625, 900, 1235
BmrFI CCNGG 4 cut(s) 209, 986, 1184, 1189
BmsI GCATC 4 cut(s) 160, 433, 781, 832
BpiI GAAGAC 1 cut(s) 942
BplI GAGNNNNNCTC 2 cut(s) 870, 902
BpmI CTGGAG 3 cut(s) 661, 792, 897
Bpu10I CCTNAGC 1 cut(s) 1229
BpuEI CTTGAG 3 cut(s) 136, 220, 1177
BsaI GGTCTC 1 cut(s) 288
BsaJI CCNNGG 4 cut(s) 60, 453, 827, 913
Bsc4I CCNNNNNNNGG 3 cut(s) 895, 908, 1071
Bse1I ACTGG 4 cut(s) 518, 659, 809, 1065
Bse3DI GCAATG 1 cut(s) 193
BseBI CCWGG 4 cut(s) 209, 986, 1184, 1189
BseDI CCNNGG 4 cut(s) 60, 453, 827, 913
BseGI GGATG 3 cut(s) 441, 796, 823
BseLI CCNNNNNNNGG 3 cut(s) 895, 908, 1071
BseMI GCAATG 1 cut(s) 193
BseMII CTCAG 2 cut(s) 498, 725
BseNI ACTGG 4 cut(s) 518, 659, 809, 1065
BseXI GCAGC 2 cut(s) 211, 913
BseYI CCCAGC 2 cut(s) 76, 502
BshFI GGCC 3 cut(s) 48, 912, 1187
BshNI GGYRCC 2 cut(s) 362, 623
BslFI GGGAC 2 cut(s) 78, 884
BslI CCNNNNNNNGG 3 cut(s) 895, 908, 1071
BsmAI GTCTC 3 cut(s) 288, 873, 965
BsmBI CGTCTC 1 cut(s) 873
BsmFI GGGAC 2 cut(s) 78, 884
BsnI GGCC 3 cut(s) 48, 912, 1187
Bso31I GGTCTC 1 cut(s) 288
Bsp1286I GDGCHC 1 cut(s) 1238
Bsp143I GATC 4 cut(s) 533, 580, 800, 1090
BspACI CCGC 3 cut(s) 196, 537, 918
BspANI GGCC 3 cut(s) 48, 912, 1187
BspCNI CTCAG 3 cut(s) 497, 724, 1242
BspLI GGNNCC 5 cut(s) 364, 439, 625, 900, 1235
BspPI GGATC 3 cut(s) 528, 575, 795
BspQI GCTCTTC 2 cut(s) 219, 684
BspT107I GGYRCC 2 cut(s) 362, 623
BspTNI GGTCTC 1 cut(s) 288
BsrDI GCAATG 1 cut(s) 193
BsrI ACTGG 4 cut(s) 518, 659, 809, 1065
BssECI CCNNGG 4 cut(s) 60, 453, 827, 913
BssMI GATC 4 cut(s) 533, 580, 800, 1090
BssT1I CCWWGG 4 cut(s) 60, 453, 827, 913
Bst2UI CCWGG 4 cut(s) 209, 986, 1184, 1189
Bst4CI ACNGT 3 cut(s) 649, 941, 975
Bst6I CTCTTC 2 cut(s) 219, 684
BstC8I GCNNGC 1 cut(s) 737
BstDEI CTNAG 4 cut(s) 91, 484, 711, 1229
BstF5I GGATG 3 cut(s) 441, 796, 823
BstKTI GATC 4 cut(s) 536, 583, 803, 1093
BstMAI GTCTC 3 cut(s) 288, 873, 965
BstMBI GATC 4 cut(s) 533, 580, 800, 1090
BstMWI GCNNNNNNNGC 4 cut(s) 161, 170, 881, 918
BstNI CCWGG 4 cut(s) 209, 986, 1184, 1189
BstSCI CCNGG 4 cut(s) 207, 984, 1182, 1187
BstV1I GCAGC 2 cut(s) 211, 913
BstV2I GAAGAC 1 cut(s) 942
BstX2I RGATCY 2 cut(s) 533, 800
BstXI CCANNNNNNTGG 1 cut(s) 460
BstYI RGATCY 2 cut(s) 533, 800
BsuI GTATCC 1 cut(s) 681
BsuRI GGCC 3 cut(s) 48, 912, 1187
BtsCI GGATG 3 cut(s) 441, 796, 823
BtsIMutI CAGTG 5 cut(s) 492, 780, 816, 971, 1072
Cac8I GCNNGC 1 cut(s) 737
Cfr13I GGNCC 1 cut(s) 898
CseI GACGC 1 cut(s) 890
Csp6I GTAC 4 cut(s) 363, 598, 624, 1101
CviAII CATG 5 cut(s) 218, 290, 299, 572, 592
CviQI GTAC 4 cut(s) 363, 598, 624, 1101
DdeI CTNAG 4 cut(s) 91, 484, 711, 1229
DpnI GATC 4 cut(s) 535, 582, 802, 1092
DpnII GATC 4 cut(s) 533, 580, 800, 1090
EaeI YGGCCR 2 cut(s) 910, 1185
Eam1104I CTCTTC 2 cut(s) 219, 684
EarI CTCTTC 2 cut(s) 219, 684
EciI GGCGGA 1 cut(s) 526
Eco130I CCWWGG 4 cut(s) 60, 453, 827, 913
Eco24I GRGCYC 1 cut(s) 1238
Eco31I GGTCTC 1 cut(s) 288
Eco47I GGWCC 1 cut(s) 898
Eco57I CTGAAG 1 cut(s) 236
EcoRII CCWGG 4 cut(s) 207, 984, 1182, 1187
EcoT14I CCWWGG 4 cut(s) 60, 453, 827, 913
EcoT38I GRGCYC 1 cut(s) 1238
ErhI CCWWGG 4 cut(s) 60, 453, 827, 913
Esp3I CGTCTC 1 cut(s) 873
FaeI CATG 5 cut(s) 221, 293, 302, 575, 595
FaqI GGGAC 2 cut(s) 78, 884
FatI CATG 5 cut(s) 217, 289, 298, 571, 591
FauNDI CATATG 1 cut(s) 271
Fnu4HI GCNGC 4 cut(s) 197, 200, 919, 927
FokI GGATG 3 cut(s) 428, 803, 810
FriOI GRGCYC 1 cut(s) 1238
Fsp4HI GCNGC 4 cut(s) 197, 200, 919, 927
FspBI CTAG 2 cut(s) 357, 1098
GluI GCNGC 4 cut(s) 197, 200, 919, 927
GsaI CCCAGC 2 cut(s) 80, 506
GsuI CTGGAG 3 cut(s) 661, 792, 897
HaeIII GGCC 3 cut(s) 48, 912, 1187
HgaI GACGC 1 cut(s) 890
Hin1II CATG 5 cut(s) 221, 293, 302, 575, 595
HindIII AAGCTT 1 cut(s) 88
HinfI GANTC 2 cut(s) 101, 401
HphI GGTGA 2 cut(s) 977, 1022
Hpy166II GTNNAC 3 cut(s) 350, 481, 652
Hpy188I TCNGA 3 cut(s) 255, 743, 754
Hpy188III TCNNGA 5 cut(s) 237, 511, 578, 1156, 1231
Hpy8I GTNNAC 3 cut(s) 350, 481, 652
HpyAV CCTTC 3 cut(s) 376, 1010, 1198
HpyCH4III ACNGT 3 cut(s) 649, 941, 975
HpyCH4V TGCA 6 cut(s) 134, 344, 424, 431, 595, 929
HpyF10VI GCNNNNNNNGC 4 cut(s) 161, 170, 881, 918
HpyF3I CTNAG 4 cut(s) 91, 484, 711, 1229
Hsp92II CATG 5 cut(s) 221, 293, 302, 575, 595
KpnI GGTACC 2 cut(s) 366, 627
Kzo9I GATC 4 cut(s) 533, 580, 800, 1090
LguI GCTCTTC 2 cut(s) 219, 684
LmnI GCTCC 4 cut(s) 32, 988, 1180, 1233
Lsp1109I GCAGC 2 cut(s) 211, 913
LweI GCATC 4 cut(s) 160, 433, 781, 832
MaeI CTAG 2 cut(s) 357, 1098
MaeIII GTNAC 1 cut(s) 811
MalI GATC 4 cut(s) 535, 582, 802, 1092
MboI GATC 4 cut(s) 533, 580, 800, 1090
MboII GAAGA 8 cut(s) 26, 206, 652, 701, 730, 947, 991, 1025
MflI RGATCY 2 cut(s) 533, 800
MhlI GDGCHC 1 cut(s) 1238
MlsI TGGCCA 2 cut(s) 912, 1187
MluCI AATT 4 cut(s) 39, 240, 556, 1146
MluNI TGGCCA 2 cut(s) 912, 1187
MmeI TCCRAC 1 cut(s) 312
Mox20I TGGCCA 2 cut(s) 912, 1187
MscI TGGCCA 2 cut(s) 912, 1187
MseI TTAA 4 cut(s) 414, 615, 1200, 1240
MslI CAYNNNNRTG 1 cut(s) 222
Msp20I TGGCCA 2 cut(s) 912, 1187
MspR9I CCNGG 4 cut(s) 209, 986, 1184, 1189
MvaI CCWGG 4 cut(s) 209, 986, 1184, 1189
MwoI GCNNNNNNNGC 4 cut(s) 161, 170, 881, 918
NdeI CATATG 1 cut(s) 271
NdeII GATC 4 cut(s) 533, 580, 800, 1090
NlaIII CATG 5 cut(s) 221, 293, 302, 575, 595
NlaIV GGNNCC 5 cut(s) 364, 439, 625, 900, 1235
NmuCI GTSAC 1 cut(s) 811
PciSI GCTCTTC 2 cut(s) 219, 684
PfeI GAWTC 2 cut(s) 101, 401
PflMI CCANNNNNTGG 2 cut(s) 895, 908
PkrI GCNGC 4 cut(s) 198, 201, 920, 928
Psp6I CCWGG 4 cut(s) 207, 984, 1182, 1187
PspFI CCCAGC 2 cut(s) 76, 502
PspGI CCWGG 4 cut(s) 207, 984, 1182, 1187
PspN4I GGNNCC 5 cut(s) 364, 439, 625, 900, 1235
PspPI GGNCC 1 cut(s) 898
PsuI RGATCY 2 cut(s) 533, 800
RsaI GTAC 4 cut(s) 364, 599, 625, 1102
RsaNI GTAC 4 cut(s) 363, 598, 624, 1101
RseI CAYNNNNRTG 1 cut(s) 222
SapI GCTCTTC 2 cut(s) 219, 684
SaqAI TTAA 4 cut(s) 414, 615, 1200, 1240
SatI GCNGC 4 cut(s) 197, 200, 919, 927
Sau3AI GATC 4 cut(s) 533, 580, 800, 1090
Sau96I GGNCC 1 cut(s) 898
ScaI AGTACT 1 cut(s) 599
ScrFI CCNGG 4 cut(s) 209, 986, 1184, 1189
SduI GDGCHC 1 cut(s) 1238
SfaNI GCATC 4 cut(s) 160, 433, 781, 832
SinI GGWCC 1 cut(s) 898
SmiMI CAYNNNNRTG 1 cut(s) 222
SmlI CTYRAG 3 cut(s) 115, 235, 1156
SmoI CTYRAG 3 cut(s) 115, 235, 1156
SpeI ACTAGT 1 cut(s) 1097
Sse9I AATT 4 cut(s) 39, 240, 556, 1146
SsiI CCGC 3 cut(s) 196, 537, 918
SspI AATATT 1 cut(s) 850
SspMI CTAG 2 cut(s) 357, 1098
StyD4I CCNGG 4 cut(s) 207, 984, 1182, 1187
StyI CCWWGG 4 cut(s) 60, 453, 827, 913
TaaI ACNGT 3 cut(s) 649, 941, 975
TaqI TCGA 2 cut(s) 12, 380
TasI AATT 4 cut(s) 39, 240, 556, 1146
TatI WGTACW 2 cut(s) 597, 1100
TauI GCSGC 2 cut(s) 199, 921
TfiI GAWTC 2 cut(s) 101, 401
Tru1I TTAA 4 cut(s) 414, 615, 1200, 1240
Tru9I TTAA 4 cut(s) 414, 615, 1200, 1240
TscAI CASTG 5 cut(s) 492, 787, 816, 978, 1072
TseFI GTSAC 1 cut(s) 811
TseI GCWGC 2 cut(s) 199, 926
Tsp45I GTSAC 1 cut(s) 811
TspDTI ATGAA 4 cut(s) 206, 315, 580, 771
TspRI CASTG 5 cut(s) 492, 787, 816, 978, 1072
Van91I CCANNNNNTGG 2 cut(s) 895, 908
VpaK11BI GGWCC 1 cut(s) 898
XapI RAATTY 2 cut(s) 39, 240
XcmI CCANNNNNNNNNTGG 1 cut(s) 215
XspI CTAG 2 cut(s) 357, 1098
ZrmI AGTACT 1 cut(s) 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.