Rh6BG232500

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000348
Physical Location & Seq
Reverse (-)
43824767 .. 43828676
3910 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG232500.1

Sequence Viewer

Length: 969 bp
ATGATGTGCAGTGGAGACCATGAAGTGCGTTGTGTGAAAAGGAAGTTGCTGTTGGAAGCCCTTGCAAGTGAACTTCCTAGCGGCACCATTAGGTTCTCTTCAAAGGTTGTTTCCATTGAGGAATCAGGCTACTTTAAGCTGGTGCATCTTGCTGACGGAACCATCCTCAAAGCCAAGGTTTTGGTTGGATGTGATGGAGTAAACTCAGTGGTTGCAAAATGGCTGGGTTTCAAGCCGCCGGTCTTTACAGGAAGATCTGCCATTCGAGGTTGTGCTGAGTTCAAGAGCAGCCATGAGTTTGATCCCATGTTAATGCAGTACCTTGGGAATGGTGTTAGATCTGGAACCGTTCCTTGTGATGATAAAAATGTTTACTGGTTCTTCACTTGGTCTCCCTCCAGCCAAGAGAAAGAGCTAGAAGAAAACCCAGCTCAGTTGAAGCAATATATGTTATTGTTAAGTAAGCTCGGGAAGGTATCAGATGAAGTAAGGGCTGTTGTGGAAAACACTAATTTGGATGCTTTTATATCCTCTCCCTTGAGATATAGGCATCCTTGGGAGCTTCTTTGGGGAAATATTAGCAAAGGTACTGTATGTGTAGCTGGAGACGCGCTCCACCCCATGACCCCAGACATTGCACAAGGCGGCTGTGCTGCATTAGAGGACGGTGTTGTATTAGCAAGGTGTCTTGGTGAGGCCTTGTTGAAGAATCGGAGGCAAGAAATTAGAAATGAAGGTGAACAAGGAAAAGATGAATATAAAATGATTGAAAGAGGGTTGAATAAGTATGCCAGTGAGAGGAAATGGAGAAGTTTTGATCTTATTAGTGCAGCTTATGTGGTTGGTTTTATACAGGAGGCTCATGGAAAAATAATGACTTTCTTGAGGAACAAGTTTTTCACTCCAATCCTGGCTGGGTTGCTGTTGAAGAAGGCTGATTATGATTGTGGTAAGCTCAGAAGCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

322

Amino Acids

35.91

Weight (kDa)

8.62

Isoelectric Point (pI)

38.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 18 - 235 4.5e-14 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 83
AccII CGCG 1 cut(s) 611
AciI CCGC 3 cut(s) 81, 236, 645
AclWI GGATC 1 cut(s) 296
AfaI GTAC 2 cut(s) 320, 589
AfiI CCNNNNNNNGG 1 cut(s) 798
AgsI TTSAA 8 cut(s) 102, 232, 283, 439, 706, 770, 781, 928
AjnI CCWGG 1 cut(s) 909
AjuI GAANNNNNNNTTGG 2 cut(s) 35, 67
AluBI AGCT 9 cut(s) 139, 415, 431, 466, 562, 602, 833, 955, 963
AluI AGCT 9 cut(s) 139, 415, 431, 466, 562, 602, 833, 955, 963
Alw26I GTCTC 3 cut(s) 9, 396, 600
AlwI GGATC 1 cut(s) 296
Ama87I CYCGRG 1 cut(s) 467
AoxI GGCC 1 cut(s) 696
ApeKI GCWGC 3 cut(s) 288, 653, 830
AspLEI GCGC 1 cut(s) 613
AsuHPI GGTGA 2 cut(s) 704, 749
AvaI CYCGRG 1 cut(s) 467
BanI GGYRCC 1 cut(s) 83
BbvI GCAGC 3 cut(s) 300, 640, 842
BccI CCATC 2 cut(s) 170, 188
BciT130I CCWGG 1 cut(s) 911
BcoDI GTCTC 3 cut(s) 9, 396, 600
BfaI CTAG 2 cut(s) 78, 416
BglII AGATCT 2 cut(s) 254, 338
BisI GCNGC 6 cut(s) 82, 236, 289, 646, 654, 831
BlsI GCNGC 6 cut(s) 83, 237, 290, 647, 655, 832
Bme1390I CCNGG 1 cut(s) 911
BmeT110I CYCGRG 1 cut(s) 467
BmiI GGNNCC 3 cut(s) 85, 160, 346
BmrFI CCNGG 1 cut(s) 911
BmsI GCATC 3 cut(s) 154, 508, 559
BplI GAGNNNNNCTC 2 cut(s) 597, 629
BpmI CTGGAG 2 cut(s) 382, 624
BpuEI CTTGAG 2 cut(s) 559, 904
BsaI GGTCTC 2 cut(s) 9, 396
BsaJI CCNNGG 3 cut(s) 174, 322, 554
BsaXI ACNNNNNCTCC 2 cut(s) 376, 406
Bsc4I CCNNNNNNNGG 1 cut(s) 798
Bse118I RCCGGY 1 cut(s) 238
Bse1I ACTGG 2 cut(s) 380, 792
Bse3DI GCAATG 1 cut(s) 633
BseBI CCWGG 1 cut(s) 911
BseDI CCNNGG 3 cut(s) 174, 322, 554
BseGI GGATG 4 cut(s) 162, 194, 523, 550
BseLI CCNNNNNNNGG 1 cut(s) 798
BseMI GCAATG 1 cut(s) 633
BseMII CTCAG 3 cut(s) 219, 267, 446
BseNI ACTGG 2 cut(s) 380, 792
BseXI GCAGC 3 cut(s) 300, 640, 842
BseYI CCCAGC 3 cut(s) 223, 427, 914
BsgI GTGCAG 2 cut(s) 28, 849
Bsh1236I CGCG 1 cut(s) 611
BshFI GGCC 1 cut(s) 698
BshNI GGYRCC 1 cut(s) 83
BsiHKCI CYCGRG 1 cut(s) 467
BsiSI CCGG 1 cut(s) 239
BslI CCNNNNNNNGG 1 cut(s) 798
BsmAI GTCTC 3 cut(s) 9, 396, 600
BsmBI CGTCTC 1 cut(s) 600
BsnI GGCC 1 cut(s) 698
Bso31I GGTCTC 2 cut(s) 9, 396
BsoBI CYCGRG 1 cut(s) 467
Bsp143I GATC 4 cut(s) 254, 301, 338, 817
BspACI CCGC 3 cut(s) 81, 236, 645
BspANI GGCC 1 cut(s) 698
BspCNI CTCAG 4 cut(s) 218, 268, 445, 969
BspFNI CGCG 1 cut(s) 611
BspLI GGNNCC 3 cut(s) 85, 160, 346
BspPI GGATC 1 cut(s) 296
BspT107I GGYRCC 1 cut(s) 83
BspTNI GGTCTC 2 cut(s) 9, 396
BsrDI GCAATG 1 cut(s) 633
BsrFI RCCGGY 1 cut(s) 238
BsrI ACTGG 2 cut(s) 380, 792
BssAI RCCGGY 1 cut(s) 238
BssECI CCNNGG 3 cut(s) 174, 322, 554
BssMI GATC 4 cut(s) 254, 301, 338, 817
BssT1I CCWWGG 3 cut(s) 174, 322, 554
Bst2UI CCWGG 1 cut(s) 911
Bst4CI ACNGT 3 cut(s) 349, 592, 668
Bst6I CTCTTC 1 cut(s) 103
BstDEI CTNAG 4 cut(s) 205, 276, 432, 956
BstF5I GGATG 4 cut(s) 162, 194, 523, 550
BstFNI CGCG 1 cut(s) 611
BstHHI GCGC 1 cut(s) 613
BstKTI GATC 4 cut(s) 257, 304, 341, 820
BstMAI GTCTC 3 cut(s) 9, 396, 600
BstMBI GATC 4 cut(s) 254, 301, 338, 817
BstMWI GCNNNNNNNGC 1 cut(s) 608
BstNI CCWGG 1 cut(s) 911
BstSCI CCNGG 1 cut(s) 909
BstUI CGCG 1 cut(s) 611
BstV1I GCAGC 3 cut(s) 300, 640, 842
BstX2I RGATCY 2 cut(s) 254, 338
BstXI CCANNNNNNTGG 1 cut(s) 181
BstYI RGATCY 2 cut(s) 254, 338
BsuRI GGCC 1 cut(s) 698
BtsCI GGATG 4 cut(s) 162, 194, 523, 550
BtsI GCAGTG 1 cut(s) 16
BtsIMutI CAGTG 3 cut(s) 16, 213, 799
CfoI GCGC 1 cut(s) 613
Cfr10I RCCGGY 1 cut(s) 238
CseI GACGC 1 cut(s) 617
Csp6I GTAC 2 cut(s) 319, 588
CviAII CATG 5 cut(s) 20, 293, 307, 622, 863
CviQI GTAC 2 cut(s) 319, 588
DdeI CTNAG 4 cut(s) 205, 276, 432, 956
DpnI GATC 4 cut(s) 256, 303, 340, 819
DpnII GATC 4 cut(s) 254, 301, 338, 817
Eam1104I CTCTTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 103
Eco130I CCWWGG 3 cut(s) 174, 322, 554
Eco147I AGGCCT 1 cut(s) 698
Eco31I GGTCTC 2 cut(s) 9, 396
Eco88I CYCGRG 1 cut(s) 467
EcoRII CCWGG 1 cut(s) 909
EcoT14I CCWWGG 3 cut(s) 174, 322, 554
ErhI CCWWGG 3 cut(s) 174, 322, 554
Esp3I CGTCTC 1 cut(s) 600
FaeI CATG 5 cut(s) 23, 296, 310, 625, 866
FatI CATG 5 cut(s) 19, 292, 306, 621, 862
Fnu4HI GCNGC 6 cut(s) 82, 236, 289, 646, 654, 831
FokI GGATG 4 cut(s) 149, 201, 530, 537
Fsp4HI GCNGC 6 cut(s) 82, 236, 289, 646, 654, 831
FspBI CTAG 2 cut(s) 78, 416
GlaI GCGC 1 cut(s) 612
GluI GCNGC 6 cut(s) 82, 236, 289, 646, 654, 831
GsaI CCCAGC 3 cut(s) 227, 431, 918
GsuI CTGGAG 2 cut(s) 382, 624
HaeIII GGCC 1 cut(s) 698
HapII CCGG 1 cut(s) 239
HgaI GACGC 1 cut(s) 617
HhaI GCGC 1 cut(s) 613
Hin1II CATG 5 cut(s) 23, 296, 310, 625, 866
Hin6I GCGC 1 cut(s) 611
HinP1I GCGC 1 cut(s) 611
HinfI GANTC 2 cut(s) 122, 709
HpaII CCGG 1 cut(s) 239
HphI GGTGA 2 cut(s) 704, 749
Hpy166II GTNNAC 4 cut(s) 71, 202, 373, 740
Hpy188I TCNGA 3 cut(s) 481, 714, 959
Hpy188III TCNNGA 4 cut(s) 283, 342, 469, 883
Hpy8I GTNNAC 4 cut(s) 71, 202, 373, 740
HpyAV CCTTC 3 cut(s) 466, 728, 925
HpyCH4III ACNGT 3 cut(s) 349, 592, 668
HpyCH4V TGCA 8 cut(s) 9, 65, 145, 215, 316, 638, 656, 830
HpyF10VI GCNNNNNNNGC 1 cut(s) 608
HpyF3I CTNAG 4 cut(s) 205, 276, 432, 956
Hsp92II CATG 5 cut(s) 23, 296, 310, 625, 866
HspAI GCGC 1 cut(s) 611
Kzo9I GATC 4 cut(s) 254, 301, 338, 817
LmnI GCTCC 2 cut(s) 559, 618
Lsp1109I GCAGC 3 cut(s) 300, 640, 842
LweI GCATC 3 cut(s) 154, 508, 559
MaeI CTAG 2 cut(s) 78, 416
MalI GATC 4 cut(s) 256, 303, 340, 819
MboI GATC 4 cut(s) 254, 301, 338, 817
MboII GAAGA 6 cut(s) 90, 264, 373, 431, 718, 940
MflI RGATCY 2 cut(s) 254, 338
MluCI AATT 2 cut(s) 511, 723
MmeI TCCRAC 2 cut(s) 33, 166
MseI TTAA 4 cut(s) 135, 311, 458, 967
MslI CAYNNNNRTG 1 cut(s) 311
MspI CCGG 1 cut(s) 239
MspR9I CCNGG 1 cut(s) 911
MvaI CCWGG 1 cut(s) 911
MvnI CGCG 1 cut(s) 611
MwoI GCNNNNNNNGC 1 cut(s) 608
NdeII GATC 4 cut(s) 254, 301, 338, 817
NlaIII CATG 5 cut(s) 23, 296, 310, 625, 866
NlaIV GGNNCC 3 cut(s) 85, 160, 346
PceI AGGCCT 1 cut(s) 698
PfeI GAWTC 2 cut(s) 122, 709
PkrI GCNGC 6 cut(s) 83, 237, 290, 647, 655, 832
Psp6I CCWGG 1 cut(s) 909
PspFI CCCAGC 3 cut(s) 223, 427, 914
PspGI CCWGG 1 cut(s) 909
PspN4I GGNNCC 3 cut(s) 85, 160, 346
PsuI RGATCY 2 cut(s) 254, 338
RsaI GTAC 2 cut(s) 320, 589
RsaNI GTAC 2 cut(s) 319, 588
RseI CAYNNNNRTG 1 cut(s) 311
SaqAI TTAA 4 cut(s) 135, 311, 458, 967
SatI GCNGC 6 cut(s) 82, 236, 289, 646, 654, 831
Sau3AI GATC 4 cut(s) 254, 301, 338, 817
ScrFI CCNGG 1 cut(s) 911
SfaNI GCATC 3 cut(s) 154, 508, 559
SmiMI CAYNNNNRTG 1 cut(s) 311
SmlI CTYRAG 2 cut(s) 538, 883
SmoI CTYRAG 2 cut(s) 538, 883
Sse9I AATT 2 cut(s) 511, 723
SseBI AGGCCT 1 cut(s) 698
SsiI CCGC 3 cut(s) 81, 236, 645
SspI AATATT 1 cut(s) 577
SspMI CTAG 2 cut(s) 78, 416
StuI AGGCCT 1 cut(s) 698
StyD4I CCNGG 1 cut(s) 909
StyI CCWWGG 3 cut(s) 174, 322, 554
TaaI ACNGT 3 cut(s) 349, 592, 668
TaqI TCGA 1 cut(s) 265
TasI AATT 2 cut(s) 511, 723
TauI GCSGC 3 cut(s) 84, 238, 648
TfiI GAWTC 2 cut(s) 122, 709
Tru1I TTAA 4 cut(s) 135, 311, 458, 967
Tru9I TTAA 4 cut(s) 135, 311, 458, 967
TscAI CASTG 3 cut(s) 16, 213, 799
TseI GCWGC 3 cut(s) 288, 653, 830
TspDTI ATGAA 4 cut(s) 36, 498, 747, 768
TspGWI ACGGA 1 cut(s) 171
TspRI CASTG 3 cut(s) 16, 213, 799
XspI CTAG 2 cut(s) 78, 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.