Rh1BG066900

FAD binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000348
Physical Location & Seq
Forward (+)
10207900 .. 10208604
705 bp
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UTR
Exon/CDS
Intron
Rh1BG066900.1

Sequence Viewer

Length: 240 bp
ATGGATATGGCAGGGGATACAAGAGAAGATGTTGTGATTGTGGGTGGTGGGATTTCAGGCCTCGCCACTGCTCTTGCTCTTCACAGAAAGGGCATAAGAAGCTTGGTCCTAGAAAAATCAAAGACTTTACAAGCCACTGGAGGTATCGTTGTGCATTCTAATGGTTGGCGTGCCCTTGAACAGCTCGGTGTAGCCTCATATATTAGACAAACTGCTGATCCTATACTATCGGGACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

79

Amino Acids

8.26

Weight (kDa)

8.23

Isoelectric Point (pI)

23.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 10 - 74 7.3e-11 FAD binding domain
DAO PF01266 10 - 46 1e-08 FAD dependent oxidoreductase
FAD_binding_2 PF00890 10 - 46 2.7e-07 FAD binding domain
FAD_oxidored PF12831 10 - 51 5.7e-06 FAD dependent oxidoreductase
NAD_binding_8 PF13450 13 - 43 2.5e-07 NAD(P)-binding Rossmann-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 212
AgsI TTSAA 1 cut(s) 179
AluBI AGCT 2 cut(s) 102, 184
AluI AGCT 2 cut(s) 102, 184
AlwI GGATC 1 cut(s) 212
AoxI GGCC 1 cut(s) 58
AspS9I GGNCC 1 cut(s) 106
AvaII GGWCC 1 cut(s) 106
BaeGI GKGCMC 1 cut(s) 175
BciVI GTATCC 1 cut(s) 10
BfaI CTAG 1 cut(s) 110
BfuI GTATCC 1 cut(s) 10
Bme18I GGWCC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 106
BpmI CTGGAG 1 cut(s) 159
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bse1I ACTGG 1 cut(s) 142
BseNI ACTGG 1 cut(s) 142
BseSI GKGCMC 1 cut(s) 175
BshFI GGCC 1 cut(s) 60
BsmI GAATGC 1 cut(s) 154
BsnI GGCC 1 cut(s) 60
Bsp1286I GDGCHC 1 cut(s) 175
Bsp143I GATC 1 cut(s) 217
BspANI GGCC 1 cut(s) 60
BspPI GGATC 1 cut(s) 212
BspQI GCTCTTC 1 cut(s) 84
BsrI ACTGG 1 cut(s) 142
BssMI GATC 1 cut(s) 217
Bst6I CTCTTC 1 cut(s) 84
BstC8I GCNNGC 1 cut(s) 171
BstKTI GATC 1 cut(s) 220
BstMBI GATC 1 cut(s) 217
BstMWI GCNNNNNNNGC 1 cut(s) 99
BstSLI GKGCMC 1 cut(s) 175
BsuI GTATCC 1 cut(s) 10
BsuRI GGCC 1 cut(s) 60
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 2 cut(s) 66, 135
Cac8I GCNNGC 1 cut(s) 171
Cfr13I GGNCC 1 cut(s) 106
CspCI CAANNNNNGTGG 2 cut(s) 55, 90
CviJI RGCY 5 cut(s) 60, 102, 134, 184, 194
CviKI_1 RGCY 5 cut(s) 60, 102, 134, 184, 194
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco147I AGGCCT 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 106
FaiI YATR 5 cut(s) 8, 95, 199, 201, 224
FspBI CTAG 1 cut(s) 110
GsuI CTGGAG 1 cut(s) 159
HaeIII GGCC 1 cut(s) 60
HindIII AAGCTT 1 cut(s) 100
Hpy188III TCNNGA 1 cut(s) 231
HpyCH4V TGCA 1 cut(s) 154
HpyF10VI GCNNNNNNNGC 1 cut(s) 99
Kzo9I GATC 1 cut(s) 217
LguI GCTCTTC 1 cut(s) 84
LpnPI CCDG 2 cut(s) 42, 123
MaeI CTAG 1 cut(s) 110
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MboII GAAGA 2 cut(s) 38, 71
MhlI GDGCHC 1 cut(s) 175
MnlI CCTC 3 cut(s) 71, 134, 205
MslI CAYNNNNRTG 1 cut(s) 159
Mva1269I GAATGC 1 cut(s) 154
MwoI GCNNNNNNNGC 1 cut(s) 99
NdeII GATC 1 cut(s) 217
PceI AGGCCT 1 cut(s) 60
PciSI GCTCTTC 1 cut(s) 84
PctI GAATGC 1 cut(s) 154
PspPI GGNCC 1 cut(s) 106
RseI CAYNNNNRTG 1 cut(s) 159
SapI GCTCTTC 1 cut(s) 84
Sau3AI GATC 1 cut(s) 217
Sau96I GGNCC 1 cut(s) 106
SduI GDGCHC 1 cut(s) 175
SetI ASST 3 cut(s) 104, 145, 186
SinI GGWCC 1 cut(s) 106
SmiMI CAYNNNNRTG 1 cut(s) 159
SseBI AGGCCT 1 cut(s) 60
SspMI CTAG 1 cut(s) 110
StuI AGGCCT 1 cut(s) 60
TscAI CASTG 2 cut(s) 73, 142
TspRI CASTG 2 cut(s) 73, 142
VpaK11BI GGWCC 1 cut(s) 106
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.