Rh6CG234300

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000348
Physical Location & Seq
Reverse (-)
39755074 .. 39802536
47463 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG234300.1

Sequence Viewer

Length: 1245 bp
ATGGAAGTAGTCGAAGATGTTGTGATTGTGGGAGCTGGAATTGCTGGCCTTACAACCTCCTTGGGACTTCACAGGCTGGGTATTAGAAGCTTAGTGCTGGAATCAGCTGATAGCTTGAGGGTAACAGGGTTTGCACTCGCAATATGGACTAATGCGTGGAGGGCTTTAGATGCCCTTGGTATTGGCAATGATATCCGGCAGCAACACCAGGCTCTTCATGGGAATGTGGCTTTCTCAAGAATTTCAGGGCTTCAGATGTTTGAGAAGTCGTATGATGTCAAAGGAAAACTTGGAGACCATGAAGTTTATTGTGTGAAAAGGAAGTTGTTGTTGCAAACCATTGCAAGTGAACTCCCTAATGGTACCATTAGGTTCTCATCAAAGGTTGTTTCCATTGAGGAATCAGGCTACTTTAAGCTGGTGCATCTTGCAGATGGAACCATCCTCAAAGCCAAGGTTTTGGTTGGCTGTGATGGAGTGAACTCAGTGGTGGCAAAATGGCTGGGCTTCAAGAAGCCAGTTTTTAAAGGGAGATCCGCCGTTAGAGGTTGTGCTGATTTCAACAGCAGTCATGGTTTTGATCCCAAGTTCATGCAGTACTTTGGGAATGGTATTAAAACTGGTACCATTCCTTGTGATGATAAAACTGTTTACTGGTTCTTCGGTTGGTATCCCTCCAACCAAGAGGAAGAGCTAAAGAAAAACCCAGCTCAGTTGAAGCAATATATGTTAAGCAAGCTCGGAAAGGTATCAGATGAAGCAAGGGCTGTTGTGGAAAACACTGATTTGGATGCTTTTAGAGCCGCTCCAGTGACATACAGGCATCCTTGGGATCTTCTTTGGGGAAATATTAGTAAAGGTAATGTATGCGTTGCTGGAGACGCTCTCCACCCCATGGTCCCAGACATTGGCCAAGGCGGCTGTGCTGCATTAGAAGACGGTGTTGTATTAGCAAGGTTTCTCGGTGAGGCACTGTTGAAGAACCAGGAGCAAGAAAATAAAGATAAAGGTGAAGAAGGAAAAGAAAAATATAAGAGGATTGAAATGGGGCTGAATAAGTATGCCAGTGAGAGGAAATGGAGAAGCATAGATCTCACTAGTACATCTAGTGTGGTTAGTTATATACAGGTATCTGATGGTGGAAAAATAACTGCTTTCTTGAGGGACAAGATTTTCGCTCCATTCCTGACCTGGTTGCTGTTTAAGAAGGCTGATTATGATTGTGGGAAGCTCAGGAGCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

414

Amino Acids

45.77

Weight (kDa)

8.85

Isoelectric Point (pI)

27.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 6 - 326 4.8e-27 FAD binding domain
Lycopene_cycl PF05834 6 - 164 5.4e-06 Lycopene cyclase protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 362, 623
AccB1I GGYRCC 2 cut(s) 362, 623
AccB7I CCANNNNNTGG 2 cut(s) 895, 908
AccBSI CCGCTC 1 cut(s) 806
AciI CCGC 3 cut(s) 537, 804, 918
AclWI GGATC 3 cut(s) 528, 575, 840
AcoI YGGCCR 1 cut(s) 910
AcsI RAATTY 1 cut(s) 240
AcuI CTGAAG 1 cut(s) 236
AfaI GTAC 4 cut(s) 364, 599, 625, 1102
AfiI CCNNNNNNNGG 3 cut(s) 895, 908, 1071
AgsI TTSAA 5 cut(s) 511, 562, 718, 979, 1043
AhlI ACTAGT 1 cut(s) 1097
AjnI CCWGG 3 cut(s) 207, 984, 1190
AluBI AGCT 9 cut(s) 35, 90, 107, 114, 418, 694, 710, 739, 1231
AluI AGCT 9 cut(s) 35, 90, 107, 114, 418, 694, 710, 739, 1231
Alw26I GTCTC 2 cut(s) 288, 873
AlwI GGATC 3 cut(s) 528, 575, 840
AoxI GGCC 2 cut(s) 46, 910
ApeKI GCWGC 2 cut(s) 199, 926
ApoI RAATTY 1 cut(s) 240
ArsI GACNNNNNNTTYG 2 cut(s) 1157, 1189
Asp718I GGTACC 2 cut(s) 362, 623
AspS9I GGNCC 1 cut(s) 898
AsuHPI GGTGA 2 cut(s) 977, 1022
AvaII GGWCC 1 cut(s) 898
BalI TGGCCA 1 cut(s) 912
BanI GGYRCC 2 cut(s) 362, 623
BanII GRGCYC 1 cut(s) 1241
BbsI GAAGAC 1 cut(s) 942
BbvI GCAGC 2 cut(s) 211, 913
BccI CCATC 4 cut(s) 428, 449, 467, 1130
BceAI ACGGC 1 cut(s) 524
BciT130I CCWGG 3 cut(s) 209, 986, 1192
BciVI GTATCC 1 cut(s) 681
BcoDI GTCTC 2 cut(s) 288, 873
BcuI ACTAGT 1 cut(s) 1097
BfaI CTAG 2 cut(s) 1098, 1107
BfuI GTATCC 1 cut(s) 681
BglI GCCNNNNNGGC 1 cut(s) 918
BglII AGATCT 1 cut(s) 1090
BisI GCNGC 4 cut(s) 200, 804, 919, 927
BlsI GCNGC 4 cut(s) 201, 805, 920, 928
BmcAI AGTACT 1 cut(s) 599
Bme1390I CCNGG 3 cut(s) 209, 986, 1192
Bme18I GGWCC 1 cut(s) 898
BmgT120I GGNCC 1 cut(s) 898
BmiI GGNNCC 5 cut(s) 364, 439, 625, 900, 1238
BmrFI CCNGG 3 cut(s) 209, 986, 1192
BmsI GCATC 4 cut(s) 160, 433, 781, 832
BpiI GAAGAC 1 cut(s) 942
BplI GAGNNNNNCTC 2 cut(s) 870, 902
BpmI CTGGAG 2 cut(s) 792, 897
Bpu10I CCTNAGC 1 cut(s) 1232
BpuEI CTTGAG 3 cut(s) 136, 220, 1180
BsaI GGTCTC 1 cut(s) 288
BsaJI CCNNGG 6 cut(s) 60, 175, 453, 827, 894, 913
Bsc4I CCNNNNNNNGG 3 cut(s) 895, 908, 1071
Bse1I ACTGG 5 cut(s) 518, 625, 659, 809, 1065
Bse3DI GCAATG 2 cut(s) 193, 339
BseBI CCWGG 3 cut(s) 209, 986, 1192
BseDI CCNNGG 6 cut(s) 60, 175, 453, 827, 894, 913
BseGI GGATG 3 cut(s) 441, 796, 823
BseLI CCNNNNNNNGG 3 cut(s) 895, 908, 1071
BseMI GCAATG 2 cut(s) 193, 339
BseMII CTCAG 2 cut(s) 498, 725
BseNI ACTGG 5 cut(s) 518, 625, 659, 809, 1065
BseXI GCAGC 2 cut(s) 211, 913
BseYI CCCAGC 3 cut(s) 76, 502, 706
BshFI GGCC 2 cut(s) 48, 912
BshNI GGYRCC 2 cut(s) 362, 623
BsiSI CCGG 1 cut(s) 196
BslFI GGGAC 3 cut(s) 78, 884, 1178
BslI CCNNNNNNNGG 3 cut(s) 895, 908, 1071
BsmAI GTCTC 2 cut(s) 288, 873
BsmBI CGTCTC 1 cut(s) 873
BsmFI GGGAC 3 cut(s) 78, 884, 1178
BsnI GGCC 2 cut(s) 48, 912
Bso31I GGTCTC 1 cut(s) 288
Bsp1286I GDGCHC 1 cut(s) 1241
Bsp143I GATC 4 cut(s) 533, 580, 832, 1090
Bsp19I CCATGG 1 cut(s) 894
BspACI CCGC 3 cut(s) 537, 804, 918
BspANI GGCC 2 cut(s) 48, 912
BspCNI CTCAG 3 cut(s) 497, 724, 1245
BspLI GGNNCC 5 cut(s) 364, 439, 625, 900, 1238
BspPI GGATC 3 cut(s) 528, 575, 840
BspQI GCTCTTC 2 cut(s) 219, 684
BspT107I GGYRCC 2 cut(s) 362, 623
BspTNI GGTCTC 1 cut(s) 288
BsrBI CCGCTC 1 cut(s) 806
BsrDI GCAATG 2 cut(s) 193, 339
BsrI ACTGG 5 cut(s) 518, 625, 659, 809, 1065
BssECI CCNNGG 6 cut(s) 60, 175, 453, 827, 894, 913
BssMI GATC 4 cut(s) 533, 580, 832, 1090
BssT1I CCWWGG 6 cut(s) 60, 175, 453, 827, 894, 913
Bst2UI CCWGG 3 cut(s) 209, 986, 1192
Bst4CI ACNGT 3 cut(s) 649, 941, 975
Bst6I CTCTTC 2 cut(s) 219, 684
BstC8I GCNNGC 2 cut(s) 46, 737
BstDEI CTNAG 4 cut(s) 91, 484, 711, 1232
BstDSI CCRYGG 1 cut(s) 894
BstF5I GGATG 3 cut(s) 441, 796, 823
BstKTI GATC 4 cut(s) 536, 583, 835, 1093
BstMAI GTCTC 2 cut(s) 288, 873
BstMBI GATC 4 cut(s) 533, 580, 832, 1090
BstMWI GCNNNNNNNGC 6 cut(s) 41, 161, 170, 800, 881, 918
BstNI CCWGG 3 cut(s) 209, 986, 1192
BstSCI CCNGG 3 cut(s) 207, 984, 1190
BstV1I GCAGC 2 cut(s) 211, 913
BstV2I GAAGAC 1 cut(s) 942
BstX2I RGATCY 3 cut(s) 533, 832, 1090
BstXI CCANNNNNNTGG 1 cut(s) 460
BstYI RGATCY 3 cut(s) 533, 832, 1090
BsuI GTATCC 1 cut(s) 681
BsuRI GGCC 2 cut(s) 48, 912
BtgI CCRYGG 1 cut(s) 894
BtsCI GGATG 3 cut(s) 441, 796, 823
BtsIMutI CAGTG 5 cut(s) 492, 780, 816, 971, 1072
Cac8I GCNNGC 2 cut(s) 46, 737
Cfr13I GGNCC 1 cut(s) 898
CseI GACGC 1 cut(s) 890
CsiI ACCWGGT 1 cut(s) 1190
Csp6I GTAC 4 cut(s) 363, 598, 624, 1101
CviAII CATG 5 cut(s) 218, 299, 572, 592, 895
CviQI GTAC 4 cut(s) 363, 598, 624, 1101
DdeI CTNAG 4 cut(s) 91, 484, 711, 1232
DpnI GATC 4 cut(s) 535, 582, 834, 1092
DpnII GATC 4 cut(s) 533, 580, 832, 1090
DraI TTTAAA 1 cut(s) 526
EaeI YGGCCR 1 cut(s) 910
Eam1104I CTCTTC 2 cut(s) 219, 684
EarI CTCTTC 2 cut(s) 219, 684
EciI GGCGGA 1 cut(s) 526
Eco130I CCWWGG 6 cut(s) 60, 175, 453, 827, 894, 913
Eco24I GRGCYC 1 cut(s) 1241
Eco31I GGTCTC 1 cut(s) 288
Eco32I GATATC 1 cut(s) 193
Eco47I GGWCC 1 cut(s) 898
Eco57I CTGAAG 1 cut(s) 236
EcoRII CCWGG 3 cut(s) 207, 984, 1190
EcoRV GATATC 1 cut(s) 193
EcoT14I CCWWGG 6 cut(s) 60, 175, 453, 827, 894, 913
EcoT38I GRGCYC 1 cut(s) 1241
ErhI CCWWGG 6 cut(s) 60, 175, 453, 827, 894, 913
Esp3I CGTCTC 1 cut(s) 873
FaeI CATG 5 cut(s) 221, 302, 575, 595, 898
FalI AAGNNNNNCTT 2 cut(s) 273, 305
FaqI GGGAC 3 cut(s) 78, 884, 1178
FatI CATG 5 cut(s) 217, 298, 571, 591, 894
Fnu4HI GCNGC 4 cut(s) 200, 804, 919, 927
FokI GGATG 3 cut(s) 428, 803, 810
FriOI GRGCYC 1 cut(s) 1241
Fsp4HI GCNGC 4 cut(s) 200, 804, 919, 927
FspBI CTAG 2 cut(s) 1098, 1107
GluI GCNGC 4 cut(s) 200, 804, 919, 927
GsaI CCCAGC 3 cut(s) 80, 506, 710
GsuI CTGGAG 2 cut(s) 792, 897
HaeIII GGCC 2 cut(s) 48, 912
HapII CCGG 1 cut(s) 196
HgaI GACGC 1 cut(s) 890
Hin1II CATG 5 cut(s) 221, 302, 575, 595, 898
HindIII AAGCTT 1 cut(s) 88
HinfI GANTC 2 cut(s) 101, 401
HpaII CCGG 1 cut(s) 196
HphI GGTGA 2 cut(s) 977, 1022
Hpy166II GTNNAC 3 cut(s) 350, 481, 652
Hpy188I TCNGA 4 cut(s) 255, 743, 754, 1135
Hpy188III TCNNGA 5 cut(s) 237, 511, 1159, 1186, 1234
Hpy8I GTNNAC 3 cut(s) 350, 481, 652
HpyAV CCTTC 2 cut(s) 1010, 1201
HpyCH4III ACNGT 3 cut(s) 649, 941, 975
HpyCH4V TGCA 7 cut(s) 134, 334, 344, 424, 431, 595, 929
HpyF10VI GCNNNNNNNGC 6 cut(s) 41, 161, 170, 800, 881, 918
HpyF3I CTNAG 4 cut(s) 91, 484, 711, 1232
Hsp92II CATG 5 cut(s) 221, 302, 575, 595, 898
KpnI GGTACC 2 cut(s) 366, 627
Kzo9I GATC 4 cut(s) 533, 580, 832, 1090
LguI GCTCTTC 2 cut(s) 219, 684
LmnI GCTCC 5 cut(s) 32, 811, 988, 1183, 1236
Lsp1109I GCAGC 2 cut(s) 211, 913
LweI GCATC 4 cut(s) 160, 433, 781, 832
MabI ACCWGGT 1 cut(s) 1190
MaeI CTAG 2 cut(s) 1098, 1107
MaeIII GTNAC 2 cut(s) 121, 811
MalI GATC 4 cut(s) 535, 582, 834, 1092
MbiI CCGCTC 1 cut(s) 806
MboI GATC 4 cut(s) 533, 580, 832, 1090
MboII GAAGA 8 cut(s) 26, 206, 652, 701, 827, 947, 991, 1025
MflI RGATCY 3 cut(s) 533, 832, 1090
MhlI GDGCHC 1 cut(s) 1241
MlsI TGGCCA 1 cut(s) 912
MluCI AATT 2 cut(s) 39, 240
MluNI TGGCCA 1 cut(s) 912
MmeI TCCRAC 1 cut(s) 702
Mox20I TGGCCA 1 cut(s) 912
MscI TGGCCA 1 cut(s) 912
MseI TTAA 6 cut(s) 414, 525, 615, 731, 1203, 1243
MslI CAYNNNNRTG 1 cut(s) 222
Msp20I TGGCCA 1 cut(s) 912
MspA1I CMGCKG 1 cut(s) 107
MspI CCGG 1 cut(s) 196
MspR9I CCNGG 3 cut(s) 209, 986, 1192
MvaI CCWGG 3 cut(s) 209, 986, 1192
MwoI GCNNNNNNNGC 6 cut(s) 41, 161, 170, 800, 881, 918
NcoI CCATGG 1 cut(s) 894
NdeII GATC 4 cut(s) 533, 580, 832, 1090
NlaIII CATG 5 cut(s) 221, 302, 575, 595, 898
NlaIV GGNNCC 5 cut(s) 364, 439, 625, 900, 1238
NmuCI GTSAC 1 cut(s) 811
PciSI GCTCTTC 2 cut(s) 219, 684
PfeI GAWTC 2 cut(s) 101, 401
PflMI CCANNNNNTGG 2 cut(s) 895, 908
PkrI GCNGC 4 cut(s) 201, 805, 920, 928
Psp6I CCWGG 3 cut(s) 207, 984, 1190
PspFI CCCAGC 3 cut(s) 76, 502, 706
PspGI CCWGG 3 cut(s) 207, 984, 1190
PspN4I GGNNCC 5 cut(s) 364, 439, 625, 900, 1238
PspPI GGNCC 1 cut(s) 898
PsuI RGATCY 3 cut(s) 533, 832, 1090
PvuII CAGCTG 1 cut(s) 107
RsaI GTAC 4 cut(s) 364, 599, 625, 1102
RsaNI GTAC 4 cut(s) 363, 598, 624, 1101
RseI CAYNNNNRTG 1 cut(s) 222
SapI GCTCTTC 2 cut(s) 219, 684
SaqAI TTAA 6 cut(s) 414, 525, 615, 731, 1203, 1243
SatI GCNGC 4 cut(s) 200, 804, 919, 927
Sau3AI GATC 4 cut(s) 533, 580, 832, 1090
Sau96I GGNCC 1 cut(s) 898
ScaI AGTACT 1 cut(s) 599
ScrFI CCNGG 3 cut(s) 209, 986, 1192
SduI GDGCHC 1 cut(s) 1241
SexAI ACCWGGT 1 cut(s) 1190
SfaNI GCATC 4 cut(s) 160, 433, 781, 832
SinI GGWCC 1 cut(s) 898
SmiMI CAYNNNNRTG 1 cut(s) 222
SmlI CTYRAG 3 cut(s) 115, 235, 1159
SmoI CTYRAG 3 cut(s) 115, 235, 1159
SpeI ACTAGT 1 cut(s) 1097
Sse9I AATT 2 cut(s) 39, 240
SsiI CCGC 3 cut(s) 537, 804, 918
SspI AATATT 1 cut(s) 850
SspMI CTAG 2 cut(s) 1098, 1107
StyD4I CCNGG 3 cut(s) 207, 984, 1190
StyI CCWWGG 6 cut(s) 60, 175, 453, 827, 894, 913
TaaI ACNGT 3 cut(s) 649, 941, 975
TaqI TCGA 1 cut(s) 12
TasI AATT 2 cut(s) 39, 240
TatI WGTACW 2 cut(s) 597, 1100
TauI GCSGC 2 cut(s) 806, 921
TfiI GAWTC 2 cut(s) 101, 401
Tru1I TTAA 6 cut(s) 414, 525, 615, 731, 1203, 1243
Tru9I TTAA 6 cut(s) 414, 525, 615, 731, 1203, 1243
TscAI CASTG 5 cut(s) 492, 787, 816, 978, 1072
TseFI GTSAC 1 cut(s) 811
TseI GCWGC 2 cut(s) 199, 926
Tsp45I GTSAC 1 cut(s) 811
TspDTI ATGAA 4 cut(s) 206, 315, 580, 771
TspRI CASTG 5 cut(s) 492, 787, 816, 978, 1072
Van91I CCANNNNNTGG 2 cut(s) 895, 908
VpaK11BI GGWCC 1 cut(s) 898
XapI RAATTY 1 cut(s) 240
XcmI CCANNNNNNNNNTGG 2 cut(s) 215, 1188
XspI CTAG 2 cut(s) 1098, 1107
ZrmI AGTACT 1 cut(s) 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.