Rroxscaffold_7G00189800

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000348
Physical Location & Seq
Forward (+)
29634151 .. 29636067
1917 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00189800.1

Sequence Viewer

Length: 411 bp
ATGGAAGTAGTAGAAGAAATTGTGATTGTTGGAGCTGGAATTGCTGGCCTTACAACTTCCTTAGGACTTCACAGGCTGGGAATTCGGAGCTTAGTGTTGGAAACATCAGAGAGTTTGAGGACGACTGGATTTGCATTCTCAACACGGAAAAATGCCTGGAAAGCCTTGGATGCCATTGGAATTGGGGAATCTCTTCGGAGACAACACGAGACACTTCATAGGTTCTCCTCCAAGGTGGTTTCCATTGAGGAATTAGGCTACTTTAAGCTGCTGCATCTTGCTGAGGGAACCATCCTCAAGGCCAAGGTCTTGGTTGGGTGTGATGGAGTGTACTCTGTGGTGGCGAAATGGCTGGGCTTCAAGCCACCGGCCTTTACAGGGAGACATGGTATAAGAGGTCGTGCGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

136

Amino Acids

14.79

Weight (kDa)

9.84

Isoelectric Point (pI)

28.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 6 - 74 4.7e-07 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 81
AfaI GTAC 1 cut(s) 332
AfiI CCNNNNNNNGG 1 cut(s) 378
AgsI TTSAA 1 cut(s) 361
AjnI CCWGG 1 cut(s) 155
AluBI AGCT 3 cut(s) 35, 90, 268
AluI AGCT 3 cut(s) 35, 90, 268
Alw26I GTCTC 3 cut(s) 193, 203, 376
AoxI GGCC 3 cut(s) 46, 300, 369
ApeKI GCWGC 2 cut(s) 268, 271
ApoI RAATTY 1 cut(s) 81
Asp700I GAANNNNTTC 1 cut(s) 192
AxyI CCTNAGG 1 cut(s) 61
BauI CACGAG 1 cut(s) 206
BbvCI CCTCAGC 1 cut(s) 282
BbvI GCAGC 2 cut(s) 255, 258
BccI CCATC 2 cut(s) 299, 317
BciT130I CCWGG 1 cut(s) 157
BcoDI GTCTC 3 cut(s) 193, 203, 376
BfaI CTAG 1 cut(s) 409
BisI GCNGC 2 cut(s) 269, 272
BlsI GCNGC 2 cut(s) 270, 273
Bme1390I CCNGG 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 289
BmrFI CCNGG 1 cut(s) 157
BmsI GCATC 2 cut(s) 160, 283
Bpu10I CCTNAGC 1 cut(s) 282
BpuEI CTTGAG 1 cut(s) 281
BsaJI CCNNGG 3 cut(s) 165, 231, 303
BsaXI ACNNNNNCTCC 2 cut(s) 373, 403
Bsc4I CCNNNNNNNGG 1 cut(s) 378
Bse118I RCCGGY 1 cut(s) 367
Bse1I ACTGG 1 cut(s) 130
Bse21I CCTNAGG 1 cut(s) 61
BseBI CCWGG 1 cut(s) 157
BseDI CCNNGG 3 cut(s) 165, 231, 303
BseGI GGATG 2 cut(s) 175, 291
BseLI CCNNNNNNNGG 1 cut(s) 378
BseMII CTCAG 1 cut(s) 273
BseNI ACTGG 1 cut(s) 130
BseRI GAGGAG 1 cut(s) 217
BseXI GCAGC 2 cut(s) 255, 258
BseYI CCCAGC 2 cut(s) 76, 352
BshFI GGCC 3 cut(s) 48, 302, 371
BsiSI CCGG 1 cut(s) 368
BslI CCNNNNNNNGG 1 cut(s) 378
BsmAI GTCTC 3 cut(s) 193, 203, 376
BsmI GAATGC 1 cut(s) 134
BsnI GGCC 3 cut(s) 48, 302, 371
BspANI GGCC 3 cut(s) 48, 302, 371
BspCNI CTCAG 1 cut(s) 274
BspLI GGNNCC 1 cut(s) 289
BsrFI RCCGGY 1 cut(s) 367
BsrI ACTGG 1 cut(s) 130
BssAI RCCGGY 1 cut(s) 367
BssECI CCNNGG 3 cut(s) 165, 231, 303
BssSI CACGAG 1 cut(s) 206
BssT1I CCWWGG 3 cut(s) 165, 231, 303
Bst2BI CACGAG 1 cut(s) 206
Bst2UI CCWGG 1 cut(s) 157
Bst6I CTCTTC 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 46
BstDEI CTNAG 3 cut(s) 61, 91, 282
BstF5I GGATG 2 cut(s) 175, 291
BstMAI GTCTC 3 cut(s) 193, 203, 376
BstMWI GCNNNNNNNGC 3 cut(s) 41, 161, 170
BstNI CCWGG 1 cut(s) 157
BstSCI CCNGG 1 cut(s) 155
BstV1I GCAGC 2 cut(s) 255, 258
BstXI CCANNNNNNTGG 1 cut(s) 310
Bsu36I CCTNAGG 1 cut(s) 61
BsuRI GGCC 3 cut(s) 48, 302, 371
BtsCI GGATG 2 cut(s) 175, 291
Cac8I GCNNGC 1 cut(s) 46
Cfr10I RCCGGY 1 cut(s) 367
Csp6I GTAC 1 cut(s) 331
CviAII CATG 1 cut(s) 386
CviQI GTAC 1 cut(s) 331
DdeI CTNAG 3 cut(s) 61, 91, 282
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
Eco130I CCWWGG 3 cut(s) 165, 231, 303
Eco81I CCTNAGG 1 cut(s) 61
EcoRI GAATTC 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 155
EcoT14I CCWWGG 3 cut(s) 165, 231, 303
ErhI CCWWGG 3 cut(s) 165, 231, 303
FaeI CATG 1 cut(s) 389
FaiI YATR 3 cut(s) 219, 387, 392
FatI CATG 1 cut(s) 385
Fnu4HI GCNGC 2 cut(s) 269, 272
FokI GGATG 2 cut(s) 182, 278
Fsp4HI GCNGC 2 cut(s) 269, 272
FspBI CTAG 1 cut(s) 409
GluI GCNGC 2 cut(s) 269, 272
GsaI CCCAGC 2 cut(s) 80, 356
HaeIII GGCC 3 cut(s) 48, 302, 371
HapII CCGG 1 cut(s) 368
Hin1II CATG 1 cut(s) 389
HinfI GANTC 1 cut(s) 188
HpaII CCGG 1 cut(s) 368
Hpy166II GTNNAC 1 cut(s) 331
Hpy188I TCNGA 3 cut(s) 87, 109, 198
Hpy8I GTNNAC 1 cut(s) 331
HpyCH4V TGCA 2 cut(s) 134, 274
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 161, 170
HpyF3I CTNAG 3 cut(s) 61, 91, 282
Hsp92II CATG 1 cut(s) 389
LmnI GCTCC 2 cut(s) 32, 87
Lsp1109I GCAGC 2 cut(s) 255, 258
LweI GCATC 2 cut(s) 160, 283
MaeI CTAG 1 cut(s) 409
MboII GAAGA 2 cut(s) 26, 185
MluCI AATT 5 cut(s) 18, 39, 81, 180, 251
MmeI TCCRAC 2 cut(s) 10, 78
MnlI CCTC 6 cut(s) 111, 238, 241, 277, 305, 389
MroXI GAANNNNTTC 1 cut(s) 192
MseI TTAA 1 cut(s) 264
MspI CCGG 1 cut(s) 368
MspR9I CCNGG 1 cut(s) 157
Mva1269I GAATGC 1 cut(s) 134
MvaI CCWGG 1 cut(s) 157
MwoI GCNNNNNNNGC 3 cut(s) 41, 161, 170
NlaIII CATG 1 cut(s) 389
NlaIV GGNNCC 1 cut(s) 289
PctI GAATGC 1 cut(s) 134
PdmI GAANNNNTTC 1 cut(s) 192
PfeI GAWTC 1 cut(s) 188
PkrI GCNGC 2 cut(s) 270, 273
Psp6I CCWGG 1 cut(s) 155
PspFI CCCAGC 2 cut(s) 76, 352
PspGI CCWGG 1 cut(s) 155
PspN4I GGNNCC 1 cut(s) 289
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 2 cut(s) 269, 272
ScrFI CCNGG 1 cut(s) 157
SetI ASST 7 cut(s) 37, 92, 224, 237, 270, 309, 400
SfaNI GCATC 2 cut(s) 160, 283
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 5 cut(s) 18, 39, 81, 180, 251
SspMI CTAG 1 cut(s) 409
StyD4I CCNGG 1 cut(s) 155
StyI CCWWGG 3 cut(s) 165, 231, 303
TasI AATT 5 cut(s) 18, 39, 81, 180, 251
TatI WGTACW 1 cut(s) 330
TfiI GAWTC 1 cut(s) 188
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TseI GCWGC 2 cut(s) 268, 271
TspDTI ATGAA 1 cut(s) 206
TspGWI ACGGA 1 cut(s) 160
XapI RAATTY 1 cut(s) 81
XmnI GAANNNNTTC 1 cut(s) 192
XspI CTAG 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.