Rw0G003690

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00138
OG0000348
Physical Location & Seq
Reverse (-)
2283 .. 4027
1745 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G003690.1

Sequence Viewer

Length: 930 bp
ATGGAAAGCATTGGTTGCATTATTGAACAGTATTATTGCAGTCACCTAACAGGAAACCTGGGCTGCTGGGGACTCGAGGTAGTGTTGGAACCATGGGATAGTTTGAGGACTACAGGGTTTGTTTTGAATACATGGACAAATGCCTGGAAAGCCTTAGAAGCCATTGGTGTTGCAAAAAAATTACAGATTTCGAGAGTTGCTTACTCAACCATTTCTGGGCTTCCAGTTTTTGGAATTTCATTTAAGGCCAAAGGAAAAGAAGGAGACCATGAAGTTCGTTGTGTGCAAAGGAAGCTGTTGTTGGAATCCCTTGCAAATGATCTTCCTAGTGGCACAACCAGGTTCTCATCAAAAGTTGTTTCAATCGAAGAATCAGGCTACTTTAAGCTTCTACATCTTGCTGATGGAACCATCCTTAAAGTTAAGAGAGTCTTGGTTGGGTGTGATGGAGTCAACTCTGTGGTTGCCAAATGGCTAAACTTCAAGCAGCTATCTTTTACAGGAAAATCCGCTATTAGAGGTCAGGCAAACTTCAAGAGCAATCATGGGTTTGATCCCAAATCCGTGCGGTTCTTCAGGCATGGTGTTAGATCTGGTGTCATCCCTCGTGATAAAAAAAAAACTAAAGGTTTGGAAGAGAATCCAGCTCAATTGAGGCAATTTGTGTTGAGCAAGCTTGGAAAGATTCCTGATGCATTAAGGGCTACTATAGAAAACACTGAACTGGATGCTTTTATATCGTCTCCCTTGACATATAAACCTCCTTGGGAGGTTCTTTGGGGACAGCTAATATTTCTGTGGCCTTTAATCCCCAAGTTGCTGTTGAAAAAGGCTGATTTTGATTGTGGGAAGCTCAGCACCACTTGCATTACTTTCTATTGGTATCTTAGATATGCAATGATGAATGCTTTAAAATTCTGGAATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

309

Amino Acids

34.79

Weight (kDa)

9.55

Isoelectric Point (pI)

25.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 230
AciI CCGC 2 cut(s) 510, 568
AclWI GGATC 1 cut(s) 548
AcsI RAATTY 3 cut(s) 234, 914, 922
AcuI CTGAAG 1 cut(s) 559
AfiI CCNNNNNNNGG 2 cut(s) 216, 230
AgsI TTSAA 6 cut(s) 26, 127, 363, 484, 535, 826
AjnI CCWGG 3 cut(s) 57, 143, 338
AjuI GAANNNNNNNTTGG 2 cut(s) 284, 316
AluBI AGCT 7 cut(s) 295, 388, 490, 647, 676, 787, 853
AluI AGCT 7 cut(s) 295, 388, 490, 647, 676, 787, 853
Alw26I GTCTC 2 cut(s) 258, 747
AlwI GGATC 1 cut(s) 548
Ama87I CYCGRG 1 cut(s) 74
AoxI GGCC 2 cut(s) 246, 800
ApeKI GCWGC 2 cut(s) 63, 487
ApoI RAATTY 3 cut(s) 234, 914, 922
AsuHPI GGTGA 1 cut(s) 35
AvaI CYCGRG 1 cut(s) 74
BauI CACGAG 1 cut(s) 606
BbvI GCAGC 2 cut(s) 50, 499
BccI CCATC 3 cut(s) 398, 419, 440
BciT130I CCWGG 3 cut(s) 59, 145, 340
BcoDI GTCTC 2 cut(s) 258, 747
BfaI CTAG 1 cut(s) 327
BfmI CTRYAG 2 cut(s) 111, 708
BglII AGATCT 1 cut(s) 590
BisI GCNGC 2 cut(s) 64, 488
BlpI GCTNAGC 1 cut(s) 854
BlsI GCNGC 2 cut(s) 65, 489
Bme1390I CCNGG 3 cut(s) 59, 145, 340
BmeT110I CYCGRG 1 cut(s) 74
BmiI GGNNCC 2 cut(s) 90, 409
BmrFI CCNGG 3 cut(s) 59, 145, 340
BmsI GCATC 2 cut(s) 682, 718
Bpu1102I GCTNAGC 1 cut(s) 854
BsaI GGTCTC 1 cut(s) 258
BsaJI CCNNGG 3 cut(s) 58, 92, 764
Bsc4I CCNNNNNNNGG 2 cut(s) 216, 230
Bse1I ACTGG 2 cut(s) 224, 729
Bse3DI GCAATG 1 cut(s) 903
BseBI CCWGG 3 cut(s) 59, 145, 340
BseDI CCNNGG 3 cut(s) 58, 92, 764
BseGI GGATG 3 cut(s) 411, 600, 733
BseLI CCNNNNNNNGG 2 cut(s) 216, 230
BseMI GCAATG 1 cut(s) 903
BseMII CTCAG 1 cut(s) 868
BseNI ACTGG 2 cut(s) 224, 729
BseXI GCAGC 2 cut(s) 50, 499
BseYI CCCAGC 1 cut(s) 66
BshFI GGCC 2 cut(s) 248, 802
BsiHKCI CYCGRG 1 cut(s) 74
BslFI GGGAC 2 cut(s) 84, 795
BslI CCNNNNNNNGG 2 cut(s) 216, 230
BsmAI GTCTC 2 cut(s) 258, 747
BsmBI CGTCTC 1 cut(s) 747
BsmFI GGGAC 2 cut(s) 84, 795
BsmI GAATGC 1 cut(s) 910
BsnI GGCC 2 cut(s) 248, 802
Bso31I GGTCTC 1 cut(s) 258
BsoBI CYCGRG 1 cut(s) 74
Bsp143I GATC 3 cut(s) 319, 553, 590
Bsp1720I GCTNAGC 1 cut(s) 854
Bsp19I CCATGG 1 cut(s) 92
BspACI CCGC 2 cut(s) 510, 568
BspANI GGCC 2 cut(s) 248, 802
BspCNI CTCAG 1 cut(s) 867
BspLI GGNNCC 2 cut(s) 90, 409
BspPI GGATC 1 cut(s) 548
BspTNI GGTCTC 1 cut(s) 258
BsrDI GCAATG 1 cut(s) 903
BsrI ACTGG 2 cut(s) 224, 729
BssECI CCNNGG 3 cut(s) 58, 92, 764
BssMI GATC 3 cut(s) 319, 553, 590
BssSI CACGAG 1 cut(s) 606
BssT1I CCWWGG 2 cut(s) 92, 764
Bst2BI CACGAG 1 cut(s) 606
Bst2UI CCWGG 3 cut(s) 59, 145, 340
Bst4CI ACNGT 1 cut(s) 30
Bst6I CTCTTC 1 cut(s) 630
BstAPI GCANNNNNTGC 2 cut(s) 15, 864
BstC8I GCNNGC 1 cut(s) 674
BstDEI CTNAG 3 cut(s) 154, 854, 887
BstDSI CCRYGG 1 cut(s) 92
BstF5I GGATG 3 cut(s) 411, 600, 733
BstKTI GATC 3 cut(s) 322, 556, 593
BstMAI GTCTC 2 cut(s) 258, 747
BstMBI GATC 3 cut(s) 319, 553, 590
BstMWI GCNNNNNNNGC 6 cut(s) 15, 149, 158, 292, 701, 864
BstNI CCWGG 3 cut(s) 59, 145, 340
BstSCI CCNGG 3 cut(s) 57, 143, 338
BstSFI CTRYAG 2 cut(s) 111, 708
BstV1I GCAGC 2 cut(s) 50, 499
BstX2I RGATCY 1 cut(s) 590
BstYI RGATCY 1 cut(s) 590
BsuRI GGCC 2 cut(s) 248, 802
BtgI CCRYGG 1 cut(s) 92
BtsCI GGATG 3 cut(s) 411, 600, 733
BtsIMutI CAGTG 1 cut(s) 717
Cac8I GCNNGC 1 cut(s) 674
CsiI ACCWGGT 1 cut(s) 338
CviAII CATG 5 cut(s) 93, 132, 269, 545, 581
DdeI CTNAG 3 cut(s) 154, 854, 887
DpnI GATC 3 cut(s) 321, 555, 592
DpnII GATC 3 cut(s) 319, 553, 590
DraI TTTAAA 1 cut(s) 912
Eam1104I CTCTTC 1 cut(s) 630
EarI CTCTTC 1 cut(s) 630
Eco130I CCWWGG 2 cut(s) 92, 764
Eco31I GGTCTC 1 cut(s) 258
Eco57I CTGAAG 1 cut(s) 559
Eco88I CYCGRG 1 cut(s) 74
EcoRI GAATTC 1 cut(s) 922
EcoRII CCWGG 3 cut(s) 57, 143, 338
EcoT14I CCWWGG 2 cut(s) 92, 764
EcoT22I ATGCAT 1 cut(s) 697
ErhI CCWWGG 2 cut(s) 92, 764
Esp3I CGTCTC 1 cut(s) 747
FaeI CATG 5 cut(s) 96, 135, 272, 548, 584
FalI AAGNNNNNCTT 2 cut(s) 416, 448
FaqI GGGAC 2 cut(s) 84, 795
FatI CATG 5 cut(s) 92, 131, 268, 544, 580
Fnu4HI GCNGC 2 cut(s) 64, 488
FokI GGATG 3 cut(s) 398, 587, 740
Fsp4HI GCNGC 2 cut(s) 64, 488
FspBI CTAG 1 cut(s) 327
GluI GCNGC 2 cut(s) 64, 488
GsaI CCCAGC 1 cut(s) 70
HaeIII GGCC 2 cut(s) 248, 802
Hin1II CATG 5 cut(s) 96, 135, 272, 548, 584
HincII GTYRAC 1 cut(s) 454
HindII GTYRAC 1 cut(s) 454
HindIII AAGCTT 2 cut(s) 386, 674
HinfI GANTC 7 cut(s) 72, 305, 371, 429, 450, 640, 685
HphI GGTGA 1 cut(s) 35
Hpy166II GTNNAC 1 cut(s) 454
Hpy188III TCNNGA 6 cut(s) 192, 535, 608, 689, 919, 927
Hpy8I GTNNAC 1 cut(s) 454
HpyAV CCTTC 1 cut(s) 254
HpyCH4III ACNGT 1 cut(s) 30
HpyCH4V TGCA 8 cut(s) 18, 39, 173, 286, 314, 695, 867, 896
HpyF10VI GCNNNNNNNGC 6 cut(s) 15, 149, 158, 292, 701, 864
HpyF3I CTNAG 3 cut(s) 154, 854, 887
Hsp92II CATG 5 cut(s) 96, 135, 272, 548, 584
Kzo9I GATC 3 cut(s) 319, 553, 590
Lsp1109I GCAGC 2 cut(s) 50, 499
LweI GCATC 2 cut(s) 682, 718
MabI ACCWGGT 1 cut(s) 338
MaeI CTAG 1 cut(s) 327
MaeIII GTNAC 1 cut(s) 41
MalI GATC 3 cut(s) 321, 555, 592
MboI GATC 3 cut(s) 319, 553, 590
MboII GAAGA 4 cut(s) 314, 380, 565, 647
MfeI CAATTG 1 cut(s) 650
MflI RGATCY 1 cut(s) 590
MluCI AATT 6 cut(s) 179, 234, 650, 659, 914, 922
MlyI GAGTC 3 cut(s) 66, 438, 459
MmeI TCCRAC 2 cut(s) 66, 282
MnlI CCTC 7 cut(s) 70, 99, 512, 615, 648, 763, 771
Mph1103I ATGCAT 1 cut(s) 697
MseI TTAA 7 cut(s) 243, 384, 417, 423, 698, 806, 911
MspR9I CCNGG 3 cut(s) 59, 145, 340
MunI CAATTG 1 cut(s) 650
Mva1269I GAATGC 1 cut(s) 910
MvaI CCWGG 3 cut(s) 59, 145, 340
MwoI GCNNNNNNNGC 6 cut(s) 15, 149, 158, 292, 701, 864
NcoI CCATGG 1 cut(s) 92
NdeII GATC 3 cut(s) 319, 553, 590
NlaIII CATG 5 cut(s) 96, 135, 272, 548, 584
NlaIV GGNNCC 2 cut(s) 90, 409
NmuCI GTSAC 1 cut(s) 41
NsiI ATGCAT 1 cut(s) 697
PaeR7I CTCGAG 1 cut(s) 74
PctI GAATGC 1 cut(s) 910
PfeI GAWTC 4 cut(s) 305, 371, 640, 685
PflMI CCANNNNNTGG 1 cut(s) 230
PkrI GCNGC 2 cut(s) 65, 489
PleI GAGTC 3 cut(s) 66, 437, 458
PpsI GAGTC 3 cut(s) 66, 437, 458
Psp6I CCWGG 3 cut(s) 57, 143, 338
PspFI CCCAGC 1 cut(s) 66
PspGI CCWGG 3 cut(s) 57, 143, 338
PspN4I GGNNCC 2 cut(s) 90, 409
PspXI VCTCGAGB 1 cut(s) 74
PsuI RGATCY 1 cut(s) 590
SaqAI TTAA 7 cut(s) 243, 384, 417, 423, 698, 806, 911
SatI GCNGC 2 cut(s) 64, 488
Sau3AI GATC 3 cut(s) 319, 553, 590
SchI GAGTC 3 cut(s) 66, 438, 459
ScrFI CCNGG 3 cut(s) 59, 145, 340
SexAI ACCWGGT 1 cut(s) 338
SfaNI GCATC 2 cut(s) 682, 718
SfcI CTRYAG 2 cut(s) 111, 708
Sfr274I CTCGAG 1 cut(s) 74
SlaI CTCGAG 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 6 cut(s) 179, 234, 650, 659, 914, 922
SsiI CCGC 2 cut(s) 510, 568
SspI AATATT 1 cut(s) 792
SspMI CTAG 1 cut(s) 327
StyD4I CCNGG 3 cut(s) 57, 143, 338
StyI CCWWGG 2 cut(s) 92, 764
TaaI ACNGT 1 cut(s) 30
TaqI TCGA 3 cut(s) 75, 191, 366
TasI AATT 6 cut(s) 179, 234, 650, 659, 914, 922
TfiI GAWTC 4 cut(s) 305, 371, 640, 685
Tru1I TTAA 7 cut(s) 243, 384, 417, 423, 698, 806, 911
Tru9I TTAA 7 cut(s) 243, 384, 417, 423, 698, 806, 911
TscAI CASTG 1 cut(s) 724
TseFI GTSAC 1 cut(s) 41
TseI GCWGC 2 cut(s) 63, 487
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 3 cut(s) 228, 285, 917
TspGWI ACGGA 1 cut(s) 553
TspRI CASTG 1 cut(s) 724
Van91I CCANNNNNTGG 1 cut(s) 230
XapI RAATTY 3 cut(s) 234, 914, 922
XhoI CTCGAG 1 cut(s) 74
XspI CTAG 1 cut(s) 327
Zsp2I ATGCAT 1 cut(s) 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.