FvH4_3g33122

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000348
Physical Location & Seq
Forward (+)
28545350 .. 28545811
462 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g33122.t1

Sequence Viewer

Length: 222 bp
ATGATGTGCAGTAGAGAGCATGAAATTCGTTGTGTGAAAAGGAAGTTGTTGTTGGAATCCTTTGCAAGTGAACTCCCTAGTGGCACCATCAGGTTCTCTTCAAAGGTTGTTTCGATTGAGGAATCAGGCTACTTAAAGATGGTGCATCTTGCTGACGGAACCATCCTCAAAGCCAAGGTTCGGAGTCACAGAGCTTCCAATCACTGGAAAGTCTTGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

74

Amino Acids

8.34

Weight (kDa)

9.83

Isoelectric Point (pI)

44.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 83
AccB7I CCANNNNNTGG 1 cut(s) 204
AcsI RAATTY 1 cut(s) 24
AfiI CCNNNNNNNGG 2 cut(s) 180, 204
AgsI TTSAA 1 cut(s) 102
AjuI GAANNNNNNNTTGG 2 cut(s) 35, 67
AluBI AGCT 1 cut(s) 194
AluI AGCT 1 cut(s) 194
ApoI RAATTY 1 cut(s) 24
BanI GGYRCC 1 cut(s) 83
BccI CCATC 3 cut(s) 95, 133, 170
BcgI CGANNNNNNTGC 2 cut(s) 8, 42
BfaI CTAG 1 cut(s) 78
BmiI GGNNCC 2 cut(s) 85, 160
BmsI GCATC 1 cut(s) 154
BsaJI CCNNGG 1 cut(s) 174
Bsc4I CCNNNNNNNGG 2 cut(s) 180, 204
Bse1I ACTGG 1 cut(s) 209
BseDI CCNNGG 1 cut(s) 174
BseGI GGATG 1 cut(s) 162
BseLI CCNNNNNNNGG 2 cut(s) 180, 204
BseNI ACTGG 1 cut(s) 209
BsgI GTGCAG 1 cut(s) 28
BshNI GGYRCC 1 cut(s) 83
BslI CCNNNNNNNGG 2 cut(s) 180, 204
BspLI GGNNCC 2 cut(s) 85, 160
BspT107I GGYRCC 1 cut(s) 83
BsrI ACTGG 1 cut(s) 209
BssECI CCNNGG 1 cut(s) 174
BssT1I CCWWGG 1 cut(s) 174
Bst6I CTCTTC 1 cut(s) 103
BstF5I GGATG 1 cut(s) 162
BtsCI GGATG 1 cut(s) 162
BtsIMutI CAGTG 1 cut(s) 202
CviAII CATG 1 cut(s) 20
CviJI RGCY 3 cut(s) 129, 173, 194
CviKI_1 RGCY 3 cut(s) 129, 173, 194
Eam1104I CTCTTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 174
EcoT14I CCWWGG 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 174
FaeI CATG 1 cut(s) 23
FaiI YATR 1 cut(s) 21
FatI CATG 1 cut(s) 19
FokI GGATG 1 cut(s) 149
FspBI CTAG 1 cut(s) 78
Hin1II CATG 1 cut(s) 23
HinfI GANTC 3 cut(s) 56, 122, 184
Hpy166II GTNNAC 1 cut(s) 71
Hpy188I TCNGA 1 cut(s) 183
Hpy8I GTNNAC 1 cut(s) 71
HpyCH4V TGCA 3 cut(s) 9, 65, 145
Hsp92II CATG 1 cut(s) 23
LpnPI CCDG 3 cut(s) 76, 111, 190
LweI GCATC 1 cut(s) 154
MaeI CTAG 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 185
MboII GAAGA 1 cut(s) 90
MluCI AATT 1 cut(s) 24
MlyI GAGTC 1 cut(s) 193
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 2 cut(s) 112, 176
MseI TTAA 1 cut(s) 134
NlaIII CATG 1 cut(s) 23
NlaIV GGNNCC 2 cut(s) 85, 160
NmuCI GTSAC 1 cut(s) 185
PfeI GAWTC 2 cut(s) 56, 122
PflMI CCANNNNNTGG 1 cut(s) 204
PleI GAGTC 1 cut(s) 192
PpsI GAGTC 1 cut(s) 192
PspN4I GGNNCC 2 cut(s) 85, 160
SaqAI TTAA 1 cut(s) 134
SchI GAGTC 1 cut(s) 193
SetI ASST 4 cut(s) 95, 108, 180, 196
SfaNI GCATC 1 cut(s) 154
SgeI CNNG 8 cut(s) 32, 78, 90, 103, 138, 161, 187, 217
Sse9I AATT 1 cut(s) 24
SspMI CTAG 1 cut(s) 78
StyI CCWWGG 1 cut(s) 174
TaqI TCGA 1 cut(s) 113
TasI AATT 1 cut(s) 24
TfiI GAWTC 2 cut(s) 56, 122
Tru1I TTAA 1 cut(s) 134
Tru9I TTAA 1 cut(s) 134
TscAI CASTG 1 cut(s) 209
TseFI GTSAC 1 cut(s) 185
Tsp45I GTSAC 1 cut(s) 185
TspDTI ATGAA 1 cut(s) 36
TspGWI ACGGA 1 cut(s) 171
TspRI CASTG 1 cut(s) 209
Van91I CCANNNNNTGG 1 cut(s) 204
XapI RAATTY 1 cut(s) 24
XspI CTAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.