RchiOBHm_Chr6g0278521

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000348
Physical Location & Seq
Reverse (-)
41610237 .. 41612743
2507 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24984

Sequence Viewer

Length: 1170 bp
ATGGAAGTAGTAGAAGAAATTGTGATTGTTGGAGCTGGAATTGCTGGCCTTACAACTTCCTTAGGACTTCACAGGCTGGGAATTCGGAGCTTAGTGTTGGAAACATCTGAGAGTTTGAGGACGACTGGATTTGCATTCTCAACATGGACAAATGCCTGGAAGGCCTTGGATGCCATTGGAATTGGGGAATCTCTTAGGAGACAACACGAGACACTTCGTAGAGGAGACCATGAAGTTCGTTGCGTGCAGAGGAAGTTGTTGTTGGAAGCCCTTGCAAATGAACTTCCTAGTGGCACAATCAGGTTCTCCTCCAAGGTGGTTTCCATTGAGGAATCAGGCTACTTTAAGCTGCTGCATCTTGCTGATGGAACCATCCTCAAGGCCAAGGTCTTGGTTGGGTGTGATGGAGTGAACTCTGTGGTGGCGAAATGGCTGGGCTTCAAGCCACCGGCCTTTACAGGGAGACATGGTATACGAGGTCGTGCGAACTACAAGAACAGTCATGGGTTTGATCCCAACTTCATGCAGTTCTTTGGCAATGGTGTTAGATCTGGTGCCATCCCTTGTGATGATAAAACAGTTTATTGGTTCTTCACTTGGAGTCCAACCAACCAAGAGAAAGAGCTAGAGAAGAACCCAGCTGAGATCAAGCAATTTATGTTGAGCAAGCTGGGAAATATACCTGATGAAATAAAAGCTGTAATTAAAAACACTGAATTGGATGCTTTTGTTTCCTCTCCTTTGAGATTTAGGCATCCATGGGAGCTTCTTTGGGGAAATATTAGCAAAGGCAATGTTTGTGTAGCTGGAGATGCGCTCCATCCTATGACCCCGGACCTTGGCCAAGGAGGCTGCTCCGCAATAGAAGACGGTGTTGTGTTGGCAAGATGTCTTGGTGAGGCCTTGCTGAAAAACTCAAGGCAAGAAATGAAAGGTAAAAGTGAACAAGGAAAGGAGGAATATAAGAAAATTGAGATGGGGTTGAATAAGTTTGCCAATGAGAGGAGATGGAGAGGCATTGACCTGATTAGTACAGGTTATATGGTTGCTTTAATGCAAGGGAGTGAAGGTAAAATGATGTCTACCTTGAACAAATATTTGGTTCCAATTCTAGCTAGGTGGCTGCTACAGAAGGCCGATTTTGATTGTGGAAAGCTCAGCAGCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

389

Amino Acids

43.13

Weight (kDa)

8.94

Isoelectric Point (pI)

37.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 6 - 89 4.5e-06 FAD binding domain
Lycopene_cycl PF05834 7 - 176 4.8e-08 Lycopene cyclase protein
FAD_binding_3 PF01494 87 - 302 4e-15 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 554
AccI GTMKAC 2 cut(s) 472, 1082
AciI CCGC 1 cut(s) 858
AclWI GGATC 1 cut(s) 506
AcoI YGGCCR 1 cut(s) 841
AcsI RAATTY 1 cut(s) 81
AfaI GTAC 1 cut(s) 1033
AfiI CCNNNNNNNGG 3 cut(s) 459, 839, 1002
AgsI TTSAA 3 cut(s) 442, 985, 1090
AjnI CCWGG 1 cut(s) 155
AjuI GAANNNNNNNTTGG 4 cut(s) 245, 277, 1082, 1114
Alw26I GTCTC 4 cut(s) 193, 203, 219, 457
AlwI GGATC 1 cut(s) 506
AlwNI CAGNNNCTG 1 cut(s) 1167
AoxI GGCC 7 cut(s) 46, 162, 381, 450, 841, 900, 1134
ApeKI GCWGC 5 cut(s) 349, 352, 852, 1123, 1161
ApoI RAATTY 1 cut(s) 81
AspLEI GCGC 1 cut(s) 817
AspS9I GGNCC 1 cut(s) 835
AsuC2I CCSGG 1 cut(s) 833
AsuHPI GGTGA 1 cut(s) 908
AvaII GGWCC 1 cut(s) 835
AxyI CCTNAGG 1 cut(s) 61
BalI TGGCCA 1 cut(s) 843
BanI GGYRCC 1 cut(s) 554
BauI CACGAG 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 873
BbvI GCAGC 4 cut(s) 336, 339, 839, 1110
BccI CCATC 7 cut(s) 359, 380, 398, 566, 828, 970, 1002
BciT130I CCWGG 1 cut(s) 157
BcnI CCSGG 1 cut(s) 833
BcoDI GTCTC 4 cut(s) 193, 203, 219, 457
BfaI CTAG 4 cut(s) 288, 626, 1112, 1116
BfmI CTRYAG 1 cut(s) 1127
BglI GCCNNNNNGGC 2 cut(s) 161, 849
BglII AGATCT 1 cut(s) 548
BisI GCNGC 5 cut(s) 350, 353, 853, 1124, 1162
BlpI GCTNAGC 1 cut(s) 1157
BlsI GCNGC 5 cut(s) 351, 354, 854, 1125, 1163
Bme1390I CCNGG 2 cut(s) 157, 833
Bme18I GGWCC 1 cut(s) 835
BmgT120I GGNCC 1 cut(s) 835
BmiI GGNNCC 3 cut(s) 370, 556, 1104
BmrFI CCNGG 2 cut(s) 157, 833
BmsI GCATC 5 cut(s) 160, 364, 712, 763, 802
BpiI GAAGAC 1 cut(s) 873
BplI GAGNNNNNCTC 2 cut(s) 801, 833
BpmI CTGGAG 1 cut(s) 828
Bpu1102I GCTNAGC 1 cut(s) 1157
BpuEI CTTGAG 2 cut(s) 362, 901
BpuMI CCSGG 1 cut(s) 833
BsaI GGTCTC 1 cut(s) 219
BsaJI CCNNGG 7 cut(s) 165, 312, 384, 758, 831, 838, 844
BsaXI ACNNNNNCTCC 4 cut(s) 454, 484, 1054, 1084
Bsc4I CCNNNNNNNGG 3 cut(s) 459, 839, 1002
Bse118I RCCGGY 1 cut(s) 448
Bse1I ACTGG 1 cut(s) 130
Bse21I CCTNAGG 1 cut(s) 61
Bse3DI GCAATG 2 cut(s) 544, 799
BseBI CCWGG 1 cut(s) 157
BseDI CCNNGG 7 cut(s) 165, 312, 384, 758, 831, 838, 844
BseGI GGATG 6 cut(s) 175, 372, 558, 727, 754, 820
BseLI CCNNNNNNNGG 3 cut(s) 459, 839, 1002
BseMI GCAATG 2 cut(s) 544, 799
BseMII CTCAG 2 cut(s) 99, 633
BseNI ACTGG 1 cut(s) 130
BseRI GAGGAG 3 cut(s) 237, 298, 1018
BseXI GCAGC 4 cut(s) 336, 339, 839, 1110
BseYI CCCAGC 4 cut(s) 76, 433, 637, 670
BsgI GTGCAG 1 cut(s) 266
BshFI GGCC 7 cut(s) 48, 164, 383, 452, 843, 902, 1136
BshNI GGYRCC 1 cut(s) 554
BsiSI CCGG 2 cut(s) 449, 833
BslI CCNNNNNNNGG 3 cut(s) 459, 839, 1002
BsmAI GTCTC 4 cut(s) 193, 203, 219, 457
BsmI GAATGC 1 cut(s) 134
BsnI GGCC 7 cut(s) 48, 164, 383, 452, 843, 902, 1136
Bso31I GGTCTC 1 cut(s) 219
Bsp143I GATC 3 cut(s) 511, 548, 645
Bsp1720I GCTNAGC 1 cut(s) 1157
Bsp19I CCATGG 1 cut(s) 758
BspACI CCGC 1 cut(s) 858
BspANI GGCC 7 cut(s) 48, 164, 383, 452, 843, 902, 1136
BspCNI CTCAG 3 cut(s) 100, 634, 1170
BspLI GGNNCC 3 cut(s) 370, 556, 1104
BspPI GGATC 1 cut(s) 506
BspT107I GGYRCC 1 cut(s) 554
BspTNI GGTCTC 1 cut(s) 219
BsrDI GCAATG 2 cut(s) 544, 799
BsrFI RCCGGY 1 cut(s) 448
BsrI ACTGG 1 cut(s) 130
BssAI RCCGGY 1 cut(s) 448
BssECI CCNNGG 7 cut(s) 165, 312, 384, 758, 831, 838, 844
BssMI GATC 3 cut(s) 511, 548, 645
BssNAI GTATAC 1 cut(s) 473
BssSI CACGAG 1 cut(s) 206
BssT1I CCWWGG 6 cut(s) 165, 312, 384, 758, 838, 844
Bst1107I GTATAC 1 cut(s) 473
Bst2BI CACGAG 1 cut(s) 206
Bst2UI CCWGG 1 cut(s) 157
Bst4CI ACNGT 3 cut(s) 500, 580, 872
BstC8I GCNNGC 3 cut(s) 46, 245, 668
BstDEI CTNAG 6 cut(s) 61, 91, 108, 194, 642, 1157
BstDSI CCRYGG 1 cut(s) 758
BstF5I GGATG 6 cut(s) 175, 372, 558, 727, 754, 820
BstHHI GCGC 1 cut(s) 817
BstKTI GATC 3 cut(s) 514, 551, 648
BstMAI GTCTC 4 cut(s) 193, 203, 219, 457
BstMBI GATC 3 cut(s) 511, 548, 645
BstMWI GCNNNNNNNGC 5 cut(s) 41, 161, 170, 812, 849
BstNI CCWGG 1 cut(s) 157
BstSCI CCNGG 2 cut(s) 155, 831
BstSFI CTRYAG 1 cut(s) 1127
BstV1I GCAGC 4 cut(s) 336, 339, 839, 1110
BstV2I GAAGAC 1 cut(s) 873
BstX2I RGATCY 1 cut(s) 548
BstXI CCANNNNNNTGG 1 cut(s) 391
BstYI RGATCY 1 cut(s) 548
BstZ17I GTATAC 1 cut(s) 473
Bsu36I CCTNAGG 1 cut(s) 61
BsuRI GGCC 7 cut(s) 48, 164, 383, 452, 843, 902, 1136
BtgI CCRYGG 1 cut(s) 758
BtsCI GGATG 6 cut(s) 175, 372, 558, 727, 754, 820
BtsIMutI CAGTG 1 cut(s) 711
Cac8I GCNNGC 3 cut(s) 46, 245, 668
CaiI CAGNNNCTG 1 cut(s) 1167
CfoI GCGC 1 cut(s) 817
Cfr10I RCCGGY 1 cut(s) 448
Cfr13I GGNCC 1 cut(s) 835
Csp6I GTAC 1 cut(s) 1032
CviAII CATG 6 cut(s) 144, 230, 467, 503, 523, 759
CviQI GTAC 1 cut(s) 1032
DdeI CTNAG 6 cut(s) 61, 91, 108, 194, 642, 1157
DpnI GATC 3 cut(s) 513, 550, 647
DpnII GATC 3 cut(s) 511, 548, 645
EaeI YGGCCR 1 cut(s) 841
Eco130I CCWWGG 6 cut(s) 165, 312, 384, 758, 838, 844
Eco147I AGGCCT 2 cut(s) 164, 902
Eco31I GGTCTC 1 cut(s) 219
Eco47I GGWCC 1 cut(s) 835
Eco81I CCTNAGG 1 cut(s) 61
EcoRI GAATTC 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 155
EcoT14I CCWWGG 6 cut(s) 165, 312, 384, 758, 838, 844
ErhI CCWWGG 6 cut(s) 165, 312, 384, 758, 838, 844
FaeI CATG 6 cut(s) 147, 233, 470, 506, 526, 762
FatI CATG 6 cut(s) 143, 229, 466, 502, 522, 758
FblI GTMKAC 2 cut(s) 472, 1082
Fnu4HI GCNGC 5 cut(s) 350, 353, 853, 1124, 1162
FokI GGATG 6 cut(s) 182, 359, 545, 734, 741, 807
Fsp4HI GCNGC 5 cut(s) 350, 353, 853, 1124, 1162
FspBI CTAG 4 cut(s) 288, 626, 1112, 1116
GlaI GCGC 1 cut(s) 816
GluI GCNGC 5 cut(s) 350, 353, 853, 1124, 1162
GsaI CCCAGC 4 cut(s) 80, 437, 641, 674
GsuI CTGGAG 1 cut(s) 828
HaeIII GGCC 7 cut(s) 48, 164, 383, 452, 843, 902, 1136
HapII CCGG 2 cut(s) 449, 833
HhaI GCGC 1 cut(s) 817
Hin1II CATG 6 cut(s) 147, 233, 470, 506, 526, 762
Hin6I GCGC 1 cut(s) 815
HinP1I GCGC 1 cut(s) 815
HinfI GANTC 3 cut(s) 188, 332, 601
HpaII CCGG 2 cut(s) 449, 833
HphI GGTGA 1 cut(s) 908
Hpy166II GTNNAC 4 cut(s) 412, 473, 944, 1083
Hpy188I TCNGA 3 cut(s) 87, 109, 1169
Hpy8I GTNNAC 4 cut(s) 412, 473, 944, 1083
HpyAV CCTTC 3 cut(s) 154, 1061, 1126
HpyCH4III ACNGT 3 cut(s) 500, 580, 872
HpyCH4V TGCA 6 cut(s) 134, 247, 275, 355, 526, 1057
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 161, 170, 812, 849
HpyF3I CTNAG 6 cut(s) 61, 91, 108, 194, 642, 1157
Hsp92II CATG 6 cut(s) 147, 233, 470, 506, 526, 762
HspAI GCGC 1 cut(s) 815
Kzo9I GATC 3 cut(s) 511, 548, 645
LmnI GCTCC 5 cut(s) 32, 87, 763, 822, 860
Lsp1109I GCAGC 4 cut(s) 336, 339, 839, 1110
LweI GCATC 5 cut(s) 160, 364, 712, 763, 802
MaeI CTAG 4 cut(s) 288, 626, 1112, 1116
MalI GATC 3 cut(s) 513, 550, 647
MboI GATC 3 cut(s) 511, 548, 645
MboII GAAGA 4 cut(s) 26, 583, 643, 878
MflI RGATCY 1 cut(s) 548
MlsI TGGCCA 1 cut(s) 843
MluCI AATT 9 cut(s) 18, 39, 81, 180, 653, 702, 716, 969, 1107
MluNI TGGCCA 1 cut(s) 843
MlyI GAGTC 1 cut(s) 610
MmeI TCCRAC 4 cut(s) 10, 78, 243, 629
Mox20I TGGCCA 1 cut(s) 843
MscI TGGCCA 1 cut(s) 843
MseI TTAA 3 cut(s) 345, 705, 1052
Msp20I TGGCCA 1 cut(s) 843
MspA1I CMGCKG 1 cut(s) 641
MspI CCGG 2 cut(s) 449, 833
MspR9I CCNGG 2 cut(s) 157, 833
Mva1269I GAATGC 1 cut(s) 134
MvaI CCWGG 1 cut(s) 157
MwoI GCNNNNNNNGC 5 cut(s) 41, 161, 170, 812, 849
NciI CCSGG 1 cut(s) 833
NcoI CCATGG 1 cut(s) 758
NdeII GATC 3 cut(s) 511, 548, 645
NlaIII CATG 6 cut(s) 147, 233, 470, 506, 526, 762
NlaIV GGNNCC 3 cut(s) 370, 556, 1104
PceI AGGCCT 2 cut(s) 164, 902
PctI GAATGC 1 cut(s) 134
PfeI GAWTC 2 cut(s) 188, 332
PkrI GCNGC 5 cut(s) 351, 354, 854, 1125, 1163
PleI GAGTC 1 cut(s) 609
PpsI GAGTC 1 cut(s) 609
Psp6I CCWGG 1 cut(s) 155
PspFI CCCAGC 4 cut(s) 76, 433, 637, 670
PspGI CCWGG 1 cut(s) 155
PspN4I GGNNCC 3 cut(s) 370, 556, 1104
PspPI GGNCC 1 cut(s) 835
PstNI CAGNNNCTG 1 cut(s) 1167
PsuI RGATCY 1 cut(s) 548
PvuII CAGCTG 1 cut(s) 641
RsaI GTAC 1 cut(s) 1033
RsaNI GTAC 1 cut(s) 1032
SaqAI TTAA 3 cut(s) 345, 705, 1052
SatI GCNGC 5 cut(s) 350, 353, 853, 1124, 1162
Sau3AI GATC 3 cut(s) 511, 548, 645
Sau96I GGNCC 1 cut(s) 835
SchI GAGTC 1 cut(s) 610
ScrFI CCNGG 2 cut(s) 157, 833
SfaNI GCATC 5 cut(s) 160, 364, 712, 763, 802
SfcI CTRYAG 1 cut(s) 1127
SinI GGWCC 1 cut(s) 835
SmlI CTYRAG 2 cut(s) 377, 916
SmoI CTYRAG 2 cut(s) 377, 916
Sse9I AATT 9 cut(s) 18, 39, 81, 180, 653, 702, 716, 969, 1107
SseBI AGGCCT 2 cut(s) 164, 902
SsiI CCGC 1 cut(s) 858
SspI AATATT 2 cut(s) 781, 1097
SspMI CTAG 4 cut(s) 288, 626, 1112, 1116
StuI AGGCCT 2 cut(s) 164, 902
StyD4I CCNGG 2 cut(s) 155, 831
StyI CCWWGG 6 cut(s) 165, 312, 384, 758, 838, 844
TaaI ACNGT 3 cut(s) 500, 580, 872
TasI AATT 9 cut(s) 18, 39, 81, 180, 653, 702, 716, 969, 1107
TatI WGTACW 1 cut(s) 1031
TfiI GAWTC 2 cut(s) 188, 332
Tru1I TTAA 3 cut(s) 345, 705, 1052
Tru9I TTAA 3 cut(s) 345, 705, 1052
TscAI CASTG 1 cut(s) 718
TseI GCWGC 5 cut(s) 349, 352, 852, 1123, 1161
TspDTI ATGAA 5 cut(s) 246, 294, 511, 702, 944
TspRI CASTG 1 cut(s) 718
VpaK11BI GGWCC 1 cut(s) 835
XapI RAATTY 1 cut(s) 81
XmiI GTMKAC 2 cut(s) 472, 1082
XspI CTAG 4 cut(s) 288, 626, 1112, 1116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.