Rw6G019900

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000348
Physical Location & Seq
Reverse (-)
39786931 .. 39789919
2989 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G019900.1

Sequence Viewer

Length: 1110 bp
ATGCAAGTAGTAGAGGACGTTGTGATTGTAGGAGCTGGAATTTCTGGCCTCACAACCGCCCTGGGACTTCACAGGCTGGGCATTAGGAGCTTAGTGCTGGAATCGTTTGATAGCTTGAGGATAACAGGGTTTGCACTCACAACATGGACTAATGCGTGGAAGGCTTTAGATGCCATTGGTGTTGGTGATTACTTACGGCAGCAACACCTGACTCTTCTTGGGAATGTGGTTTTCTCGAGAATTTCAGGGCTTCAGACGTTTGAGATGTCATTTAAGGAGAAAGGAAAACATGGAGACCATGAAAATCGTTGTGTGAAAAGGAAGTTGCTGTTGGAAGCCCTTGCAAGTGAACTTCCTAGTGGCACCATTAGGTTCTCTTCAAAGGTTGTTTCCATTGAGGAATCAGGCTACTTTAAGCTGGTGCATCTTGCTGACGGAACCATCCTCAAAGCCAAGATTTTGGTTGGATGTGATGGAGTAAACTCAGTGGTTGCAAAATGGCTGGGCTTCAAGCCGCCGGTCTTTACAGGAAGATCTGCCATTCGAGGTTGTGCTGAGTTCAAGAGCAGCCATGAGTTTGATCCCATGTTCATGCAGTACTTTGGGAACGGTGTTAGATCTGGTTTAGTTCCTTGTGATGATAAAAATGTTTACTGGGCCATCACTTGGACTCCCTCGAGCCAAGAGAAAGAGCTAGAGGAAAACCCAGCTGAGTTGAAGCGATATATGTTAAGCAAGCTAGGAAAGGTATCAGATGAAGTACGGGCCGTTGTGGAAAACACCGATTTGGATGCTTTTATATCCTCTCCATTGAGATATAGCAAAGGTAATGTATGTGTGGCTGGAGACGCGCTCCACCCCATGACCCCAGACATTGGACAAGGTGGCTGTGCTGCATTAGAGGACGGTGTTGAAGGTGAACAAGGAAAAGTGGAATATAAAATGATTGAAAGAGGGTTGAATAAGTATGCCACTTATGTGGTTGGTTTTATACAGGAGGCTGATGGAAAAATAATGACTTTCTTGAGGGACAAGTTTTTCTCTCCAATCCTGGCCGGGTTGCTGTTGAAGAAGGCTGATTATGATTGTGGTAAGCTCAGAAGCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

369

Amino Acids

40.58

Weight (kDa)

7.04

Isoelectric Point (pI)

30.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 6 - 304 1.7e-26 FAD binding domain
Lycopene_cycl PF05834 6 - 172 3.3e-07 Lycopene cyclase protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38540 AT5G05320
fragaria_vesca FvH4_1g12561 FvH4_1g12581 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_2g15511 FvH4_3g33121 FvH4_3g33122 FvH4_4g08974 FvH4_4g09610 FvH4_7g17841
malus_domestica MD05G1123600.v1.1 MD05G1123700.v1.1
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167500_v2.0.a1 Prupe.8G167700_v2.0.a1 Prupe.8G167700_v2.0.a1
pyrus_communis pycom05g11780 pycom05g11790
rosa_chinensis RchiOBHm_Chr6g0278521 RchiOBHm_Chr6g0278531 RchiOBHm_Chr6g0278551 RchiOBHm_Chr6g0278591 RchiOBHm_Chr6g0278611 RchiOBHm_Chr6g0278671 RchiOBHm_Chr6g0278691 RchiOBHm_Chr6g0278701
rosa_laevigata RLG00000013200 RLG00000013201 RLG00000013203 RLG00000013205 RLG00000013206 RLG00000013210 RLG00000013211 RLG00000013213 RLG00000013216 RLG00000013217
rosa_multiflora Rmu_sc0000258.1_g000072 Rmu_sc0000258.1_g000073 Rmu_sc0000258.1_g000082 Rmu_sc0000258.1_g000083 Rmu_sc0000258.1_g000090 Rmu_sc0000258.1_g000094 Rmu_sc0000258.1_g000096 Rmu_sc0002777.1_g000006 Rmu_sc0002777.1_g000011 Rmu_sc0002777.1_g000019 Rmu_sc0006193.1_g000001 Rmu_sc0034228.1_g000001 Rmu_ssc0000042.1_g000052 Rmu_ssc0000144.1_g000014
rosa_roxburghii Rroxscaffold_7G00189700 Rroxscaffold_7G00189710 Rroxscaffold_7G00189720 Rroxscaffold_7G00189730 Rroxscaffold_7G00189770 Rroxscaffold_7G00189800 Rroxscaffold_7G00189820 Rroxscaffold_7G00189960 Rroxscaffold_7G00190070 Rroxscaffold_7G00190090 Rroxscaffold_7G00190140 Rroxscaffold_7G00190160 Rroxscaffold_7G00190170 Rroxscaffold_7G00190270 Rroxscaffold_7G00190280 Rroxscaffold_7G00190300 Rroxscaffold_7G00190310
rosa_rugosa Rorug02G0222700 Rorug06G0117300 Rorug06G0117400 Rorug06G0117700 Rorug06G0117900 Rorug06G0118000 Rorug06G0118100 Rorug06G0118200
rosa_samantha Rh1BG066900 Rh2BG292300 Rh6BG231700 Rh6BG231800 Rh6BG232000 Rh6BG232300 Rh6BG232500 Rh6CG234100 Rh6CG234200 Rh6CG234300 Rh6CG234700 Rh6DG225400 Rh6DG225500 Rh6DG225800 Rh6DG226000 Rh6DG226300
rosa_wichuraiana Rw0G003090 Rw0G003690 Rw0G021770 Rw4G037090 Rw6G019870 Rw6G019890 Rw6G019900 Rw6G019910 Rw6G019920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 362
AccB7I CCANNNNNTGG 2 cut(s) 666, 875
AccII CGCG 1 cut(s) 851
AciI CCGC 2 cut(s) 57, 515
AclWI GGATC 1 cut(s) 575
AcoI YGGCCR 1 cut(s) 1053
AcsI RAATTY 2 cut(s) 39, 240
AcuI CTGAAG 1 cut(s) 236
AfaI GTAC 2 cut(s) 599, 762
AfiI CCNNNNNNNGG 2 cut(s) 666, 875
AgsI TTSAA 8 cut(s) 381, 511, 562, 718, 914, 950, 961, 1069
AjnI CCWGG 2 cut(s) 60, 1050
AjuI GAANNNNNNNTTGG 2 cut(s) 314, 346
AleI CACNNNNGTG 1 cut(s) 977
AluBI AGCT 9 cut(s) 35, 90, 114, 418, 694, 710, 739, 1096, 1104
AluI AGCT 9 cut(s) 35, 90, 114, 418, 694, 710, 739, 1096, 1104
Alw26I GTCTC 2 cut(s) 288, 840
AlwI GGATC 1 cut(s) 575
Ama87I CYCGRG 2 cut(s) 235, 676
AoxI GGCC 4 cut(s) 46, 657, 765, 1053
ApeKI GCWGC 3 cut(s) 199, 567, 893
ApoI RAATTY 2 cut(s) 39, 240
AspLEI GCGC 1 cut(s) 853
AspS9I GGNCC 2 cut(s) 657, 765
AsuC2I CCSGG 1 cut(s) 1057
AsuHPI GGTGA 2 cut(s) 197, 929
AvaI CYCGRG 2 cut(s) 235, 676
BanI GGYRCC 1 cut(s) 362
BbvI GCAGC 3 cut(s) 211, 579, 880
BccI CCATC 4 cut(s) 449, 467, 668, 998
BceAI ACGGC 2 cut(s) 212, 752
BcgI CGANNNNNNTGC 2 cut(s) 773, 807
BciT130I CCWGG 2 cut(s) 62, 1052
BcnI CCSGG 1 cut(s) 1057
BcoDI GTCTC 2 cut(s) 288, 840
BfaI CTAG 3 cut(s) 357, 695, 740
BglII AGATCT 2 cut(s) 533, 617
BisI GCNGC 4 cut(s) 200, 515, 568, 894
BlsI GCNGC 4 cut(s) 201, 516, 569, 895
BmcAI AGTACT 1 cut(s) 599
Bme1390I CCNGG 3 cut(s) 62, 1052, 1057
BmeT110I CYCGRG 2 cut(s) 235, 676
BmgT120I GGNCC 2 cut(s) 657, 765
BmiI GGNNCC 2 cut(s) 364, 439
BmrFI CCNGG 3 cut(s) 62, 1052, 1057
BmrI ACTGGG 1 cut(s) 664
BmsI GCATC 3 cut(s) 160, 433, 781
BmuI ACTGGG 1 cut(s) 664
BplI GAGNNNNNCTC 2 cut(s) 837, 869
BpmI CTGGAG 1 cut(s) 864
BpuEI CTTGAG 2 cut(s) 136, 1045
BpuMI CCSGG 1 cut(s) 1057
BsaI GGTCTC 1 cut(s) 288
BsaJI CCNNGG 2 cut(s) 60, 61
BsaXI ACNNNNNCTCC 2 cut(s) 655, 685
Bsc4I CCNNNNNNNGG 2 cut(s) 666, 875
Bse118I RCCGGY 1 cut(s) 517
Bse1I ACTGG 1 cut(s) 659
BseBI CCWGG 2 cut(s) 62, 1052
BseDI CCNNGG 2 cut(s) 60, 61
BseGI GGATG 3 cut(s) 441, 473, 796
BseLI CCNNNNNNNGG 2 cut(s) 666, 875
BseMII CTCAG 3 cut(s) 498, 546, 702
BseNI ACTGG 1 cut(s) 659
BseXI GCAGC 3 cut(s) 211, 579, 880
BseYI CCCAGC 3 cut(s) 76, 502, 706
Bsh1236I CGCG 1 cut(s) 851
BshFI GGCC 4 cut(s) 48, 659, 767, 1055
BshNI GGYRCC 1 cut(s) 362
BsiHKCI CYCGRG 2 cut(s) 235, 676
BsiSI CCGG 2 cut(s) 518, 1056
BslFI GGGAC 2 cut(s) 78, 1043
BslI CCNNNNNNNGG 2 cut(s) 666, 875
BsmAI GTCTC 2 cut(s) 288, 840
BsmBI CGTCTC 1 cut(s) 840
BsmFI GGGAC 2 cut(s) 78, 1043
BsnI GGCC 4 cut(s) 48, 659, 767, 1055
Bso31I GGTCTC 1 cut(s) 288
BsoBI CYCGRG 2 cut(s) 235, 676
Bsp143I GATC 3 cut(s) 533, 580, 617
BspACI CCGC 2 cut(s) 57, 515
BspANI GGCC 4 cut(s) 48, 659, 767, 1055
BspCNI CTCAG 4 cut(s) 497, 547, 703, 1110
BspFNI CGCG 1 cut(s) 851
BspLI GGNNCC 2 cut(s) 364, 439
BspPI GGATC 1 cut(s) 575
BspT107I GGYRCC 1 cut(s) 362
BspTNI GGTCTC 1 cut(s) 288
BsrFI RCCGGY 1 cut(s) 517
BsrI ACTGG 1 cut(s) 659
BssAI RCCGGY 1 cut(s) 517
BssECI CCNNGG 2 cut(s) 60, 61
BssMI GATC 3 cut(s) 533, 580, 617
Bst2UI CCWGG 2 cut(s) 62, 1052
Bst4CI ACNGT 2 cut(s) 611, 908
Bst6I CTCTTC 2 cut(s) 219, 382
BstC8I GCNNGC 1 cut(s) 737
BstDEI CTNAG 5 cut(s) 91, 484, 555, 711, 1097
BstF5I GGATG 3 cut(s) 441, 473, 796
BstFNI CGCG 1 cut(s) 851
BstHHI GCGC 1 cut(s) 853
BstKTI GATC 3 cut(s) 536, 583, 620
BstMAI GTCTC 2 cut(s) 288, 840
BstMBI GATC 3 cut(s) 533, 580, 617
BstMWI GCNNNNNNNGC 4 cut(s) 87, 161, 170, 848
BstNI CCWGG 2 cut(s) 62, 1052
BstSCI CCNGG 3 cut(s) 60, 1050, 1055
BstUI CGCG 1 cut(s) 851
BstV1I GCAGC 3 cut(s) 211, 579, 880
BstX2I RGATCY 2 cut(s) 533, 617
BstXI CCANNNNNNTGG 2 cut(s) 460, 979
BstYI RGATCY 2 cut(s) 533, 617
BsuRI GGCC 4 cut(s) 48, 659, 767, 1055
BtsCI GGATG 3 cut(s) 441, 473, 796
BtsIMutI CAGTG 1 cut(s) 492
Cac8I GCNNGC 1 cut(s) 737
CfoI GCGC 1 cut(s) 853
Cfr10I RCCGGY 1 cut(s) 517
Cfr13I GGNCC 2 cut(s) 657, 765
CseI GACGC 1 cut(s) 857
Csp6I GTAC 2 cut(s) 598, 761
CviAII CATG 7 cut(s) 144, 290, 299, 572, 586, 592, 862
CviQI GTAC 2 cut(s) 598, 761
DdeI CTNAG 5 cut(s) 91, 484, 555, 711, 1097
DpnI GATC 3 cut(s) 535, 582, 619
DpnII GATC 3 cut(s) 533, 580, 617
EaeI YGGCCR 1 cut(s) 1053
Eam1104I CTCTTC 2 cut(s) 219, 382
EarI CTCTTC 2 cut(s) 219, 382
Eco31I GGTCTC 1 cut(s) 288
Eco57I CTGAAG 1 cut(s) 236
Eco88I CYCGRG 2 cut(s) 235, 676
EcoRII CCWGG 2 cut(s) 60, 1050
Esp3I CGTCTC 1 cut(s) 840
FaeI CATG 7 cut(s) 147, 293, 302, 575, 589, 595, 865
FaqI GGGAC 2 cut(s) 78, 1043
FatI CATG 7 cut(s) 143, 289, 298, 571, 585, 591, 861
Fnu4HI GCNGC 4 cut(s) 200, 515, 568, 894
FokI GGATG 3 cut(s) 428, 480, 803
Fsp4HI GCNGC 4 cut(s) 200, 515, 568, 894
FspBI CTAG 3 cut(s) 357, 695, 740
GlaI GCGC 1 cut(s) 852
GluI GCNGC 4 cut(s) 200, 515, 568, 894
GsaI CCCAGC 3 cut(s) 80, 506, 710
GsuI CTGGAG 1 cut(s) 864
HaeIII GGCC 4 cut(s) 48, 659, 767, 1055
HapII CCGG 2 cut(s) 518, 1056
HgaI GACGC 1 cut(s) 857
HhaI GCGC 1 cut(s) 853
Hin1II CATG 7 cut(s) 147, 293, 302, 575, 589, 595, 865
Hin6I GCGC 1 cut(s) 851
HinP1I GCGC 1 cut(s) 851
HindIII AAGCTT 1 cut(s) 1102
HinfI GANTC 4 cut(s) 101, 211, 401, 670
HpaII CCGG 2 cut(s) 518, 1056
HphI GGTGA 2 cut(s) 197, 929
Hpy166II GTNNAC 4 cut(s) 350, 481, 652, 920
Hpy188I TCNGA 3 cut(s) 255, 754, 1100
Hpy188III TCNNGA 4 cut(s) 235, 237, 562, 1024
Hpy8I GTNNAC 4 cut(s) 350, 481, 652, 920
HpyAV CCTTC 3 cut(s) 154, 908, 1066
HpyCH4III ACNGT 2 cut(s) 611, 908
HpyCH4IV ACGT 2 cut(s) 18, 257
HpyCH4V TGCA 7 cut(s) 4, 134, 344, 424, 494, 595, 896
HpyF10VI GCNNNNNNNGC 4 cut(s) 87, 161, 170, 848
HpyF3I CTNAG 5 cut(s) 91, 484, 555, 711, 1097
HpySE526I ACGT 2 cut(s) 18, 257
Hsp92II CATG 7 cut(s) 147, 293, 302, 575, 589, 595, 865
HspAI GCGC 1 cut(s) 851
Kzo9I GATC 3 cut(s) 533, 580, 617
LmnI GCTCC 3 cut(s) 32, 87, 858
Lsp1109I GCAGC 3 cut(s) 211, 579, 880
LweI GCATC 3 cut(s) 160, 433, 781
MaeI CTAG 3 cut(s) 357, 695, 740
MaeII ACGT 2 cut(s) 18, 257
MalI GATC 3 cut(s) 535, 582, 619
MboI GATC 3 cut(s) 533, 580, 617
MboII GAAGA 4 cut(s) 206, 369, 543, 1081
MflI RGATCY 2 cut(s) 533, 617
MluCI AATT 2 cut(s) 39, 240
MlyI GAGTC 2 cut(s) 205, 664
MmeI TCCRAC 2 cut(s) 312, 445
MseI TTAA 4 cut(s) 273, 414, 731, 1108
MslI CAYNNNNRTG 2 cut(s) 590, 977
MspA1I CMGCKG 1 cut(s) 710
MspI CCGG 2 cut(s) 518, 1056
MspR9I CCNGG 3 cut(s) 62, 1052, 1057
MvaI CCWGG 2 cut(s) 62, 1052
MvnI CGCG 1 cut(s) 851
MwoI GCNNNNNNNGC 4 cut(s) 87, 161, 170, 848
NciI CCSGG 1 cut(s) 1057
NdeII GATC 3 cut(s) 533, 580, 617
NlaIII CATG 7 cut(s) 147, 293, 302, 575, 589, 595, 865
NlaIV GGNNCC 2 cut(s) 364, 439
OliI CACNNNNGTG 1 cut(s) 977
PaeR7I CTCGAG 2 cut(s) 235, 676
PasI CCCWGGG 1 cut(s) 61
PfeI GAWTC 2 cut(s) 101, 401
PflMI CCANNNNNTGG 2 cut(s) 666, 875
PkrI GCNGC 4 cut(s) 201, 516, 569, 895
PleI GAGTC 2 cut(s) 205, 664
PpsI GAGTC 2 cut(s) 205, 664
Psp6I CCWGG 2 cut(s) 60, 1050
PspFI CCCAGC 3 cut(s) 76, 502, 706
PspGI CCWGG 2 cut(s) 60, 1050
PspN4I GGNNCC 2 cut(s) 364, 439
PspPI GGNCC 2 cut(s) 657, 765
PspXI VCTCGAGB 1 cut(s) 676
PsuI RGATCY 2 cut(s) 533, 617
PvuII CAGCTG 1 cut(s) 710
RsaI GTAC 2 cut(s) 599, 762
RsaNI GTAC 2 cut(s) 598, 761
RseI CAYNNNNRTG 2 cut(s) 590, 977
SaqAI TTAA 4 cut(s) 273, 414, 731, 1108
SatI GCNGC 4 cut(s) 200, 515, 568, 894
Sau3AI GATC 3 cut(s) 533, 580, 617
Sau96I GGNCC 2 cut(s) 657, 765
ScaI AGTACT 1 cut(s) 599
SchI GAGTC 2 cut(s) 205, 664
ScrFI CCNGG 3 cut(s) 62, 1052, 1057
SfaNI GCATC 3 cut(s) 160, 433, 781
Sfr274I CTCGAG 2 cut(s) 235, 676
SlaI CTCGAG 2 cut(s) 235, 676
SmiMI CAYNNNNRTG 2 cut(s) 590, 977
SmlI CTYRAG 4 cut(s) 115, 235, 676, 1024
SmoI CTYRAG 4 cut(s) 115, 235, 676, 1024
Sse9I AATT 2 cut(s) 39, 240
SsiI CCGC 2 cut(s) 57, 515
SspMI CTAG 3 cut(s) 357, 695, 740
StyD4I CCNGG 3 cut(s) 60, 1050, 1055
TaaI ACNGT 2 cut(s) 611, 908
TaiI ACGT 2 cut(s) 21, 260
TaqI TCGA 3 cut(s) 236, 544, 677
TasI AATT 2 cut(s) 39, 240
TatI WGTACW 1 cut(s) 597
TauI GCSGC 1 cut(s) 517
TfiI GAWTC 2 cut(s) 101, 401
Tru1I TTAA 4 cut(s) 273, 414, 731, 1108
Tru9I TTAA 4 cut(s) 273, 414, 731, 1108
TscAI CASTG 1 cut(s) 492
TseI GCWGC 3 cut(s) 199, 567, 893
TspDTI ATGAA 3 cut(s) 315, 580, 771
TspGWI ACGGA 1 cut(s) 450
TspRI CASTG 1 cut(s) 492
Van91I CCANNNNNTGG 2 cut(s) 666, 875
XapI RAATTY 2 cut(s) 39, 240
XhoI CTCGAG 2 cut(s) 235, 676
XspI CTAG 3 cut(s) 357, 695, 740
ZrmI AGTACT 1 cut(s) 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.